Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06345 LG1 93969833 93971092 PREDICTED: zinc finger protein ZAT4
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/G 93970014 synonymous_variant p.Leu28Leu
A/G 93970083 synonymous_variant p.Ser51Ser
A/C 93970257 synonymous_variant p.Leu109Leu
A/C 93970455 synonymous_variant p.Arg175Arg
C/T 93970476 synonymous_variant p.Thr182Thr
C/T 93970752 synonymous_variant p.Leu274Leu
C/T 93970761 synonymous_variant p.Val277Val
C/G 93970875 3_prime_UTR_variant
T/G 93970877 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06345.1
MDNRHKCKLCSRSFTNGRALGGHMKAHLASFPLPPKPQTLTHSSFTYSSSSDSQQEHLKEQDSLSYALRENPKKTFRVTDPEDRESETESKNPTRQRSKRNRKSAMLKLSFVVSTPLVTEPEPVSSVSDTSPEEDVAMSLMMLSRDTWNVVTNAGPPQRSKRRCTGSETKLKKLRGKYLCHTCGKAFRSSRALGSHRIICCRQEESQNQNNDNNSIKVFECPFCYKVFGSGQALGGHKRSHLIPSSSSTVNDSLKFKQTFIDLNMPAQPEEDDLSVVSDA*


CDS Sequence:
>Vu_06345.1
ATGGACAATAGACACAAATGCAAGCTTTGTTCCAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAAGCTCATCTAGCTTCTTTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTCAACAAGAACACCTCAAAGAACAAGATTCCCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGACCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACCGGAAATCCGCCATGCTCAAGCTAAGCTTCGTCGTCTCCACACCTCTCGTCACTGAACCCGAACCCGTGAGTTCGGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGAGGCAAGTACCTCTGTCACACCTGCGGCAAAGCCTTTCGATCCTCTCGAGCCTTGGGGAGTCACAGAATCATTTGTTGTCGTCAAGAGGAATCTCAGAATCAAAACAACGACAACAATAGTATTAAGGTTTTCGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCTTCATCGTCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCAGCCGGAAGAGGATGACCTCAGTGTTGTCTCTGATGCCTGA


Promoter Sequence:
>Vu_06345::LG1:93967833-93969833(+)
AAATGCAGGACTAATATGAACGAACCATGTTATTATTGTATGTTATTGTTTTAAAAAAATAATTACTGCAAAAGAAATGTCATGTTATTGTATGTTATTGTTGTAAAAAAATAATAATTGCAAAAAAATGTTAGTTAACAATGTTTATTTTTTTTATTAACGTTCATAAATATATAGTTTTTATTTTCTTATTAAAGTTCATAAGTGTCCGTCTTTATTATTTATTATTGTGACAACCGTAGATAAAACAATTTTTGCATTCTAAAAAATACACAAAATCAAGTTTTTTTTTATTCTCGAGATTAGCACAATATAATACGAATAAATCCTCAAGGAGAATGATACATGTTTGTTCGTAACCATTTTTATTTCCTTCCATTTGAAGGGGAAAATCTCTCCGGCATACATATCCGTGAAAATGTACCCAAATGAGTTTGAATTCAAAAAGTGTGTATGATAAAAGATATATATTTCTTTTTGTATTTCATACCATAAAGCGTGTAGCCATAATAAACTTGTTTTATGGGTTCTGAGTTACTCCACTCCCGAATTGATTTAAAATGAATATTGAGTGAGTGCATAGTCTATTTAGCCTCCAAGTTGTAACTACTGAGCAGCATGGCATTTTGGAAATATGATCGGCACATGTTAGGTAAGAAGAAATTGGCTTGGTACACCTGTCAATTTATTTTTAACATGTTAGTAATTGGTATTATTAACCTTTCAAAATCATGGGTTTATAAAAGAGATGAAAAATGGCATTAATAGAACAGTGCATTGTTGCTTTAGTTTGGCAAGGTTTGGAGTGGCATGAAGCATTTGTGCTTTGATGGTGATTCTTGGTACGAGTGGTGGCTGAAAGAAGTTAGTGGTATATATAGTGGAGGAGAAAAATTGGACCGAGTAGATACTTTATTTCTTTATTTTCGTAATCTGGAAGTTTTTCTAAAACACCAATTACCAAGAGTTTGTTGCTCTCGCAATTAGTCTGCGTTTGTTGAGGACCATCATCATCATCAGTGTCCTCACATTTCTTCTTCTTTCCATTACCGGTTGTTGGATTTAAGTCTCGGGCACAACTTAACTTCAGTTAACCTACCTACATTCATCAAATCTCTCTTAACCAATCTGTATACGTATACAAAAATTTAAATTAATTATAATCAAGTGCATTTTATCCTTTAAAATACATTACTTTGCTTCTAAATAAACTAAATTAGAAAAAATGGAGTGCAAGGAGTTTATTTATTTATTTATTTATTATTATATAAGAGAGAATCCCATCTTATTTTTTACATGTAGAGAAGTTATCACATGATAGGAAAATTTGGGAATTTGTCTCGGTAGCGTCATATTGTATTCAATGTTACATTTTGGTTACATCTTGCAATCAGAATTTAATAGAACCACCAATCATTCAGATTAGTGAGTTGCACATCACAACCAAATAATGATCCATTATCACACCTTCCATTCCAATGAATAATGAATATATTTCAGGGTCCCATAGGTTTTTTTTTCATGTAATTCTGGTTATACATACCAAATATAAGATTAATCTATCTTATTTAATAATTTTGGAAACGAAGTCTGAAATACACAGTATTATTACATAGCAGGATGAAGTTAATAAAAATGATTAATGATGGTAATCTGTGGATTTACTGAGAAGGCAGTGGTTTACGAAAGCAGTTTTAAAGTTGTGGTTTGGAGAGCCCTGGAAGCAATAAATGGAAAAGGGTTAATGGAATTGGGCAGCAAGGTTTGCATGTTACTTATGGCTCTTTCTCTGTTGAGGATCACACTTTCTTAATTTTGGGCGCTGGATAATTAATGCCACTGTTATAATGTGTTTTGACATTTTAGCTCGCACACACAAGTCATATTTTACGGTAGGCCAAAGAAAAAAAAAAAATCATAGTTTTGGAGTGTGTCTTTTGGTGGAGGAATGCTTGTCACCTACTCCTTTTAAGTTCCCAATTCCTCCAAAAACACTCTTG


Gene Sequence:
>Vu_06345(+)
GTGTGAGACACCACAACAACAACAACCAATAACAATAACAACATTAGAAGAAGAACAAGTACTAGAAGTAGTAGAAGTAGCACTGGTGGTTGCTCCTCATGGACAATAGACACAAATGCAAGCTTTGTTCCAGGTCTTTCACCAATGGCAGAGCCCTTGGTGGTCACATGAAAGCTCATCTAGCTTCTTTCCCTCTTCCTCCAAAGCCTCAAACTTTAACTCACTCTTCCTTCACTTATTCCTCTTCCTCAGACTCTCAACAAGAACACCTCAAAGAACAAGATTCCCTTAGTTACGCGCTCAGGGAGAATCCTAAGAAGACCTTCAGAGTAACGGATCCTGAAGACAGAGAGAGCGAGACCGAGTCAAAGAACCCAACTCGCCAACGATCCAAGAGGAACCGGAAATCCGCCATGCTCAAGCTAAGCTTCGTCGTCTCCACACCTCTCGTCACTGAACCCGAACCCGTGAGTTCGGTCTCCGACACCTCCCCGGAGGAAGACGTAGCCATGAGCCTCATGATGCTCTCCCGCGACACGTGGAACGTAGTCACCAATGCAGGTCCACCGCAGAGATCAAAGAGGCGCTGCACGGGATCAGAGACCAAGCTCAAGAAACTCCGAGGCAAGTACCTCTGTCACACCTGCGGCAAAGCCTTTCGATCCTCTCGAGCCTTGGGGAGTCACAGAATCATTTGTTGTCGTCAAGAGGAATCTCAGAATCAAAACAACGACAACAATAGTATTAAGGTTTTCGAATGTCCCTTTTGTTACAAGGTGTTCGGCTCTGGTCAAGCTCTGGGTGGACACAAGAGATCTCACCTAATCCCTTCATCGTCTTCAACAGTTAACGATTCCCTTAAATTCAAACAGACCTTCATAGATCTCAACATGCCGGCGCAGCCGGAAGAGGATGACCTCAGTGTTGTCTCTGATGCCTGATTTCCATATCTTTAATTGTTTAATGTTTAGTTGTTGCTGCTAGAGTGATCTTTTTTGTTTTTTTATATAAAAGTGACTGAGAATATTTCCTTATGTTTATTCATAGATCAAATGCTTTTGATTCTACAATGGTGGCCTGAGTATAAGTGGTGTTGGTTATTTTTTTCACTTTTCTGTGTATGAGCAGAGTTAGTTATAACTTACACATGGTGAATTACTAGTTAACAGGTGAATTTTATTGTATTGTACAGAACTTGGTTCATCGTACTACTAATCTTAAACATAGTTTCAATGCAAATTTGTGATGTGGTTGTGGACC