Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06330 LG1 93810045 93811006 PREDICTED: transcription factor MYB114-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cell fate commitment, root hair cell differentiation, cell fate commitment, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, root hair cell differentiation, root hair cell differentiation, positive regulation of transcription, DNA-templated, cell differentiation, root hair cell differentiation, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 93810075 missense_variant p.Asp11Tyr
G/A 93810122 stop_gained p.Trp26*
G/A 93810132 missense_variant p.Ala30Thr
T/C 93810141 missense_variant p.Ser33Pro
A/G 93810179 downstream_gene_variant
A/T 93810236 stop_lost p.Ter36Leuext*?
G/T 93810237 stop_lost p.Ter36Tyrext*?
T/A 93810330 synonymous_variant p.Ser67Ser
G/A 93810357 splice_region_variant&synonymous_variant p.Gln76Gln
T/A 93810383 downstream_gene_variant
T/C 93810426 downstream_gene_variant
G/T 93810448 downstream_gene_variant
G/C 93810606 downstream_gene_variant
T/C 93810831 synonymous_variant p.Leu126Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06330.1
MNRGSWTPEEDRKLAQCIQFHGAKRWKTIAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNQREERPESSTTHEIVGQNKNLGDNLALSENEVATNEVGNLDVSFNIDEFFNFSEESCGLDWLNKYLELDHIPQTTENS*


CDS Sequence:
>Vu_06330.1
ATGAACAGAGGTTCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATTCAATTTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAGAGAGGAGAGACCAGAATCTTCAACAACACATGAAATTGTTGGCCAGAATAAGAATCTTGGGGACAACCTTGCACTGTCAGAGAACGAGGTTGCAACCAACGAAGTTGGTAACTTAGATGTTAGTTTCAACATTGATGAGTTTTTCAACTTCTCTGAGGAATCCTGTGGGTTAGATTGGCTGAACAAGTACTTAGAACTTGACCACATTCCTCAAACCACAGAAAACTCTTAA


Promoter Sequence:
>Vu_06330::LG1:93808045-93810045(+)
TAAGTTGATAGGTGAAGAATATAATTGAAATTTTATTTGTTTAGAGTGTTTTGAAAGGTTTACAATTTAATTATTTTGATAAAAAGTAATTTGAATGTTTAGTTGTATAAACTAATTGATCTGATGAAAATTTTGGAAGTTGTATAATTGATTTAATGAAAAAATAAACAGAGATGGAGAAATAAATAAAACAATTAGAATTTATAGTGTTATATTTATTTTATTTTATTTTGAAAAAAAAACAATTAAGGTTGTTTCTTTATTTTATGTATGATATGAATCTTAGATGGCAATTATAATATTGTCCAACTAACAGCATGCATTAATATTTAATAATTTGATTGGCTGTAAATGCATTTGACTTTATCAATGTTTTTCCAAAAACAAAAAGCAACCTCTTCTTACCTTCGACTTTTAAAATCCTATCGACAAAAGGCTTCAATTTTATAAATGAAGTTCATTTGGTTGAGAAAGGATTTAAGTGAGTTTTGTTTCATGTTGTGAACTAAGTTTTTATGAGTTTTGTATATGAATCCTGAACAATAAGAATATATATATAATATAAACAACAACATAAATAACACATTGAATACACGTTTAAAATGTTGATAGTTATTGTATTCAAAATATAAAATTATGTGGGCTATGCTTTTCAATATCTATAACCAAAAAGTCGAATCGAAATATATTTTATATCTCTCTTTTTATATATTCTTCTTCATTCTTAATTTTTTAAAGATATGTTTATGTAAATTTACAAGCTTTCAAGATTGCTTTTAAGAGGTACTCAGCTTTTCTTAATCAAATCTCTTTCTTTAATTGATAGTATGATTTTGATAATGGTTGTTGTTTACAATATTTAGTAGTAGAATATTGTCATCTTTAACAACAAATAGAATACTTCATCTCAAAGTACATGTTTTTATTTACTCATTTCAACTTGTTATTTTCAAAATGTTTTGCACATTATTTTCATTTAATTTTTATCAAATGTAAGATGCATGCTTTATGAATAATATTGAAATAATTGAAAAATGAAAAAGTCATACTAGGCTCTTCTACAAAAAGTATCTAAGTCACTATAATAATTAACTTTATATGATAAGGTATCATTAACTCCTCTAACCACTAACATAAACTCCTAAACATAATAAATTGTGTGTGAAAATAATAGCTTTAATTTTCCATGTCAGCTAATTACAGACAAATCAAAATATCCCATAGTAAGTTTTGGTCCGACACAATACACTAATCCAACCTCAAAAATGTAAATATTCATAACTGATTAAACACAAAGGGTTTCTCCATCATTCCAATTTCTGTTTACCCATAACAAACAACTTTAGTGTTGTAATGCATTATTACGTACTTTTAAAATGGTCGTATCTACTTTAGTCCTTTTATGTGATACTTATTTATTAACCATTTGTTGTTTATTCATTAATGAATGAATAAATGCGAAGTTAAACTCACTATCTAACTATTTATTTATTTATTTATTATTATTATTATTATTATTATAACCAATTTTTGTTTTCAAAACTTATTTTTTGTGCACAGAAATCTTACGAGAATGAACCAACTAACTAGTAGGTGAGATACTATTAGCACTTAAGTGAGAGACTTACAAGAATTCACCAAATGATCAAAACACGTGGCAATTAATTAGCAAAAACCAAATCTTAAAAACCACAAAAACACGGATACGAAGAATCTACTTTCCATTCTCGAAGGAATAACTGTCAGTAACTGGTGGTTGGAGCTTCCCATTTTCTCTGACATATCAATGTCCGATACGAAGGGCAGATACATATAAACACACTCATTCACTCACCGACACTTCAACCTTAACACGCGCTTCCATATTCACCATTGTTTCAACTTTGTTTTCATATATATCACCCCATTTAAAGCCCATGTTTATTCCCTCAACAACACAAAAACATTATCTATTCTGATGGCACCAAGGATCAATGATGCCACACCCAACAGATCACCCA


Gene Sequence:
>Vu_06330(+)
ATGAACAGAGGTTCATGGACCCCAGAGGAAGACAGAAAGCTTGCCCAATGCATTCAATTTCATGGTGCAAAGAGGTGGAAGACTATTGCAGTTAAATCAGGTTAGAGATTCACAATATACAGTACAAACCAACTACTGCAACTTAGTTACTCAGTTAACTTAAATAGTTGCATGGTTTGGTAGGTTTGAATAGATGTGGGAAGAGTTGCAGGCTGAGATGGCTAAACTATCTGAGACCTAATATCAAGAGGGGAAACATATCAGATGAAGAAGAAGATTTGATTCTTAGGCTTCACAGACTCTTGGGAAACAGGTTTCTAATCATCAAACACTTATACTATTGCAAGAAAAGCTGGTTATGTTTTTGTTTCTAAGTCTTTATAGATAAAAGTTTCCAGAAATTGATAAACCATTACTGAGAAGAAAAAATACACGTATAACTTATATATATAATCATGTGTTATTTAATATATACTATAGTCTGTATTTTAAATATCTTATTTATGTATTACATCATATCATACTACTTATAATCTTTACAAAAGTATTTTGTTGATTTCTGCATCAGAAGATGAGTAACTAAATGCAAATCCTCATGAAGATAACAATGAGATTGTGGGCATTTTGGTGTTTTTAGGTGGTCTTTGATAGCTGGTAGGCTTCCAGGACGAACAGACAATGAAATTAAGAATTATTGGAATTCTCATTTGTGCAAAAAAGTGAATCAGAGAGAGGAGAGACCAGAATCTTCAACAACACATGAAATTGTTGGCCAGAATAAGAATCTTGGGGACAACCTTGCACTGTCAGAGAACGAGGTTGCAACCAACGAAGTTGGTAACTTAGATGTTAGTTTCAACATTGATGAGTTTTTCAACTTCTCTGAGGAATCCTGTGGGTTAGATTGGCTGAACAAGTACTTAGAACTTGACCACATTCCTCAAACCACAGAAAACTCTTAA