Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06313 LG1 93553405 93554513 PREDICTED: ethylene-responsive transcription factor 1A-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cell division, response to nematode, phloem or xylem histogenesis, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to nematode, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA binding, protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 93553434 3_prime_UTR_variant
G/T 93553530 3_prime_UTR_variant
A/G 93553540 3_prime_UTR_variant
G/A 93553546 3_prime_UTR_variant
G/C 93553860 missense_variant p.Arg183Gly
A/C 93553869 missense_variant p.Tyr180Asp
T/A 93554015 missense_variant p.Lys131Met
C/T 93554095 synonymous_variant p.Glu104Glu
G/T 93554167 synonymous_variant p.Val80Val
C/T 93554328 missense_variant p.Val27Ile
A/G 93554450 5_prime_UTR_premature_start_codon_gain_variant
A/G 93554454 5_prime_UTR_variant
T/C 93554456 5_prime_UTR_variant
G/A 93554485 5_prime_UTR_variant
T/G 93554492 5_prime_UTR_variant
G/T 93554494 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06313.1
MYGHSTYESDLALYSIRRHLLGDSESVFGIPACASGRASGVSLLYSCLSDNWGDLPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPDTVLSGFPTDFTVKLEPDVMPAVTSSPPLTAVVKQEKQASPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPEPVRVSSKRSSSPESGAGPAKKKKVGGSEQVGSQVAECRRGEELLVS*


CDS Sequence:
>Vu_06313.1
ATGTACGGACACAGTACATACGAATCAGATTTGGCACTCTATTCGATTCGCCGCCACTTGCTCGGCGATTCCGAATCAGTATTCGGAATCCCCGCATGTGCATCGGGTCGGGCATCCGGTGTCAGCCTATTGTACTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAGGAGGATGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTGGAGGCCGGGTCGCCCGATACCGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAGCCGGACGTGATGCCAGCGGTGACGAGTTCGCCTCCTTTGACAGCGGTGGTGAAGCAGGAGAAGCAGGCTTCTCCGGCGAAGGGGAAGCACTATCGCGGCGTGAGACAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCGGAGGATGCGGCGTTAGCCTACGACCGTGCCGCCTACCGTATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGAGTTAACTCCGGCGAACCCGAGCCGGTGAGGGTGAGTTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGGTCCGGCGAAGAAAAAGAAAGTGGGGGGGTCTGAGCAAGTGGGAAGTCAAGTGGCAGAGTGCAGACGTGGCGAAGAATTATTGGTGAGCTGA


Promoter Sequence:
>Vu_06313::LG1:93554513-93556513(-)
CTTCATATTTGTTTCCTGCCAAATACTCTACTTTGAACCTAAATCTTGACCAAATGTTTTTCTACTATCGTTCATTTCCCTCATTTTGAAATCCAAATTGGGACAATTGTGTTTGTTTGTCTATATACTTTAAAATCTTTAAAAGACCTTAAGCAAGTTCATGTGTGTTAATTCTTGTCCCCTATTGACACTTACAAGAGACATGGGTTGATAATCAACATAATGTCAATCATTGATAGATTTAAAGAATTATTGTGTCGTTCTACATCGTGAAATAAACATAATAAAAATTCAAAGAAAAAAACAAAAAAATTCCTTAAAATGGTTATCTAAATGTACATGTTATACAAAATTACACAAATACAACCACAAATGACCGATAAAAAATAAAAAAAAAAAAGAGAAAAACACACACACACACACAACAAAAGTAAAAATAATAAGACATCGTAGTTTCTCCAATGAGACTATTGATTTGAAGAAGGTGGTCTCAGAAATAGCTCTGTCAAAAGAGCTTTGGTAGAAAGTGACATAGGATAAATGACCTCGTTTTGGGCATATACGAGAGGAATCAGAAAGAGGTCCAAGATCACGAGTGTTAGAACAAATAGAGTTGCTCCGATATGATCTTTAATTGGATAAACAAAGAGAAACCATACTTGGAAAATTCAATATATATATATATATATATATATATATATATATATAATATTAAATAAAAAGGAAGAAAAATGAGATAGAAGAGAATGGAGGAGTCAGATGTGTCGACCCTTTACTTTTTGCGTCCATATGCTTTAAATTTTTGTTCATTATTCTTTTATTATAAAAAAATAAGAGACAAGAAACCAAACAATGATATCATATCCATGTTAAAATTTTTATATAATTAGTTTTAAATTAGATTTAATCATTATGATAATTCTTATATCTTATTGTTTTTATCTGAATTCTTCTTTACCGTAAAAAAAAAGACTAATAACAGATTTTCAGTTGATATATCTCATCACAGTGACTATACAAATATTGAAAGATACATAAACAAAAATAAAGTGTCTGGAAAAGAAAGCCAAAGGAAAAGAAAATAACAAAAATAGAAATTAACAAAAAAAATTAAAACTCGGAAATAAAGTAGAATTTAAAAACTTTCACCCATGGAAAGCCTCACTCACAGATCCAAAAACTCCCAAAACAATCTAAAAAGGACTCACAACACTTAGATATTAGAAGAATACAAAATATTACACGGTTAAATACTCCTTTAAAAGCCAAAAATTTCCCTATATAAATATCCCAATCTGTAAGTACAATTTTAAATTTATTTGACTAAGAAGTAAAAAAAAAGGCCTGGTTGTAATAAATAGTGATATAATATAGGCGTATGAGAAAATAATCGGCGAATATGCAGCTTGGAAAGGTGACATCAGTGAAGACAAAAACCAAGCAAGTTGTCTGCACCTGTAAGCGAAATGACGTCACTCCTGTACGGCTTTCGTCACCATACATCGACACAAAGTTATTATTATTAATAAAGAAAAATAAAAGAGAAACGATATACATCTAAGATATTTATATAACATATTTTAAATTATATTTTCGCTGTCATTTTACAATTTGAAATTTCATTTTATTGTTTATTACAGACCAAGAACAAAGACTTGACGCAATATAGTATTAGGATTTTCTGGATTTAATTTAGTCCTTAGTTATTAATATCATAAGACTTGTTGTAAGAAAAATCTGCGGAAAAAATGGTTTCAAATCAAGCACGTGAGGAAAATGCGCACTAATTCCTTGCCGTTTACACTTTACACATGCGAACCTTCAGCGAAGCTAAGTGGATGACTCCAACACGAAGAAAAAGCAATGAATTAACACTCTCCATCCACAAAAAAAAAATATATATAAAAATATAAAAAAAATTCAAAGGATAAATCAGAAAATCCCAAGTGCATGAACCTACAATCCTATAAATACCCACCAATTCCGATTCTCATAAGTTC


Gene Sequence:
>Vu_06313(-)
GAATATTCAATACCCTCTTCAAAAATATCCAAAATCCTTATTTTCCTCACTGTCTCAAATCTTTTGCAAATTTCACACCACTGTAATAGGAACATCACAAACCGGAGATGTACGGACACAGTACATACGAATCAGATTTGGCACTCTATTCGATTCGCCGCCACTTGCTCGGCGATTCCGAATCAGTATTCGGAATCCCCGCATGTGCATCGGGTCGGGCATCCGGTGTCAGCCTATTGTACTCCTGTTTGAGCGACAATTGGGGTGACCTTCCGTTAAAGGAGGATGATTCCGAAGACATGGTGCTCTACGGCGTGCTCCGTGACGCCGTTAACGTGGGGTGGGTCCCATCTCTGGAGGCCGGGTCGCCCGATACCGTGTTGTCGGGTTTTCCTACGGATTTCACGGTGAAGCTGGAGCCGGACGTGATGCCAGCGGTGACGAGTTCGCCTCCTTTGACAGCGGTGGTGAAGCAGGAGAAGCAGGCTTCTCCGGCGAAGGGGAAGCACTATCGCGGCGTGAGACAACGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACCCGGCGAAAAACGGGGCGCGGGTTTGGCTGGGAACGTTTGAGACCGCGGAGGATGCGGCGTTAGCCTACGACCGTGCCGCCTACCGTATGCGGGGGTCGAGGGCGTTGCTGAATTTTCCGTTGAGAGTTAACTCCGGCGAACCCGAGCCGGTGAGGGTGAGTTCGAAGCGGTCTTCATCGCCGGAAAGTGGGGCGGGTCCGGCGAAGAAAAAGAAAGTGGGGGGGTCTGAGCAAGTGGGAAGTCAAGTGGCAGAGTGCAGACGTGGCGAAGAATTATTGGTGAGCTGAGAGAAATTGGGTGGTGCTGTGTTAATGAATTAAATACAATTGTAATTATTGAGGTGCTTGTATTGCTCTTACCCCACTCATCATCATCCAACTCAATTTTGGAAGCTACAAAAACCCGAAGCTGAAGAGGACCGAGCTTTAAAAAATATAGAATTTAGAAGATAACGAAGGAGAGTGAGATTATGTGATTTAGCAATGTGAATACCAAATTTCTTATTTTCTTTGTTAAAAGTTATCTTTATGAATGGGTTAATTTTG