Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06218 LG1 92177144 92178518 PREDICTED: transcription factor bHLH18-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein dimerization activity
SNP Position Effect Amino acid change
T/G 92177414 missense_variant p.Asn304His
G/C 92177462 missense_variant p.Leu288Val
G/T 92177667 missense_variant p.Ser219Arg
G/T 92177679 synonymous_variant p.Gly215Gly
T/*,A 92177736 missense_variant p.Glu196Asp
A/T 92177820 intron_variant
C/A 92178099 synonymous_variant p.Pro112Pro
G/A 92178141 synonymous_variant p.Cys98Cys
C/A 92178338 missense_variant p.Val33Phe
A/C 92178500 missense_variant p.Ser7Ala
T/A 92178505 missense_variant p.Glu5Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06218.1
MTSMEESWTSWLCDMEPDDYSFIGQSDTKVEDVNGSLASPRDIATALEENPQSSFSTESHSSVTESGIEERPLKLIKTCTSNSAKTDQLSQMRASTPCSYILSFDNTNPPTPKVESAIKPETKVVKRGIALPSKNEPKRVTQESKKTGSSARSSHHTQDHIIAERMRREKISQQFIALSSLIPDLKKMDKVSVLVEAIRYVKELKEKVKVMEEQGKRKSHEPVTCGKKAQVCAAADEDVSDTSSNSGEFGNSDDPSSKTNLLLPEVEARVSKKNVLIRILCEKEKAVLANIFREVEKLHLSVINSSALSFGSSVLDTTIVAEMEDEFNMSVKELAGNLRVGLMQFM*


CDS Sequence:
>Vu_06218.1
ATGACCTCAATGGAGGAATCGTGGACTAGTTGGCTCTGTGATATGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACACAAAGGTGGAGGATGTTAATGGAAGTTTAGCATCTCCTCGTGATATAGCCACTGCATTAGAAGAGAATCCGCAGAGCTCATTTTCCACTGAGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTAATCAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCTCACAAATGAGAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACACCGAAGGTTGAATCGGCTATAAAGCCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGGGCAAAAGGAAAAGCCATGAACCGGTGACGTGTGGGAAGAAAGCTCAGGTTTGTGCTGCCGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGGTGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTGCTGGCGAACATTTTTAGAGAGGTAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACACAACCATCGTAGCCGAGATGGAAGATGAATTCAACATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG


Promoter Sequence:
>Vu_06218::LG1:92178518-92180518(-)
ACGTGGCAGCTGTGCATTGGCTCAGTGAACCGGGGTGAGGGGTATTTTGGGTTTTTTCTGGTTTGTTTTCAATTCACTGAACCAATGCACAGCTGCCACGTCGCCGTTGTCAAAATTGTGTCAAACTTTTGTTGTCCAAATAACATTTTCCTATCATCTAATGTGAGTCTAGTGGAGGAATTATGAATGGGAACAACTTTTTAGATCTCAAAGCTGCAATCTCTCTACAAATGCATTAAATGCAATGTTAATTACCTCGTTTTCCGTACCTTGTTCAACGGACAAGATATATTTATATTGTAAGGTCAATTGTAAAATCGAAATCCTTCAAAAAAACAAAAGTTACAGGTATTTAATATGTTGGAGGTCCACGGATTTTTTTTAAAATGAGTTTTTAACTCTTATAATATTTGTTGTCATTTATTTTAATCTTCCGTGAATTGTAACAAAAAAAACATGTTTTATGTTCATTTAAATATATTATATTTAAATTTTGTAAATATAATATATTTTTGGTTTAATCTTTATATATACATATATTAATCAGTTTATCCCGACTTCCATGTGAGTGATATAACACTCATGATTTTAATAGGTGATGAAGAGTAATTTTTGAATAAAAACATAACTTGTTTTGTGAAAAATAAAAAACAGTTATATTTGCGGAATCTTAAAACAATTTTAAGTCAATTAGAAACAAGTAATAATAACTTATGAATTAAGAGAAGATGTAAACCCAATCCCCATCTTGTTTATAAATATGTTTTGTTGTTTTTTTTTAATTTTATTTTGAAATTATCAAAATGGAATAACTTTTAAAAAAATAAAATTTAAATAAGTCACGTCAAGTTAATACGGTTTAAAAATAAAAATTGTGTCATACCAAAACAATTTTATTTTAACTGAAAAAAAATTGTGTCAAGTAAGACGGCTTTTGATAAAAAAATTGAAGTGATAGTATATTAGACTTTAATACATTTCATAAAACAGAATTAAAACTGTTACAATATCATATGACCTTAATATATTTTGTAAAACATTAAAATTAAGCTGTAACGAATTTAACTTTTTCATAATTTGACACAACTTCAATAGCATGGTCACTACACAACTTCCTTGTCTAAGTTTTAAACTTTTTAAAAGTTAACCGTTTGATAATTTCAGATACACCAAAATGGTAAAAAAAACGGTTTTGTTGATTAACTATAATAACAAGCATATTTGTAATCCTGTTTTTCATATAGTAAACCAAAAACATGGCCAAATATTTCAATTTTTTGTTTTCTTGAATAAAACTTCTTACACATTTTGATGGTTTATAGACAATCACATTAAATTCTATTACATCATCAAAATAAATGCACACGTTAAAAAAGAAAACAAAATGATTTTTTTCACACTTAAATTTTTTACATTCATTTAATATTATTTTTCTCTATTTTATATTTTTTTCTTTTGAAAAAATATAAAAAATTATATTTTTATAATGATTTTATCCTTCTATTCTAACAAATGAATATAAGTGTCGTAATATTATTATTTAAAATAAAAAAGTTTATACGACGATTAACCAGACAGTAAAGTGTGGCAGGCACAAAATAATATGCAGAGGTAAAATGTGCATGTTCTTTTTGAAATCATCCTGGTGATTCATCTAAACAGGTAAAGGTGTCAACAAATTCAAGCTCTGATATACTGGTAAATTAGCAAGTGGAACAAGCACTTTCGGACACGTAATAAAGTATGTCTACAAATTGAAGAATCTGCGCTGGGGTGCTGCCCTCTATAAATCTAAAAGGCCCAACTTGTGAGTTCTTTTCCATAGATTGGGTTCGCGTTTAGGTATTCAGATTTTGCTGGAAGAGGTAATTGAGATCTCGTTTTCTCTTGGAAGGTATATATGAACCAAAGAATGTGTATCATTTGTTTTACTTCCTACTTTCAGGAACCATTCGTACTCTCATCGTGCTTGCGGAAACTGAAGCAAAATTTGTAACAGG


Gene Sequence:
>Vu_06218(-)
ATGACCTCAATGGAGGAATCGTGGACTAGTTGGCTCTGTGATATGGTAAAGTCATATTATTATAACTATCGGTATTATTAATGTCTACATGCTATTACTTTTTGCTTAAATTTCACTACATTGTTGCAGGAGCCAGATGATTACAGTTTCATCGGTCAATCAGACACAAAGGTGGAGGATGTTAATGGAAGTTTAGCATCTCCTCGTGATATAGCCACTGCATTAGAAGAGAATCCGCAGAGCTCATTTTCCACTGAGAGTCACTCTTCAGTGACTGAGAGTGGCATAGAAGAGAGGCCTTTGAAGTTAATCAAGACATGCACTTCAAACTCTGCCAAAACAGACCAACTCTCACAAATGAGAGCTTCCACACCCTGCTCCTATATTCTTTCCTTTGACAACACCAATCCACCAACACCGAAGGTTGAATCGGCTATAAAGCCAGAAACCAAGGTTGTGAAACGTGGGATAGCTCTGCCTTCAAAGAATGAACCAAAACGTGTTACTCAGGAGAGCAAGAAAACGGGCTCATCAGCCAGATCTTCTCATCACACACAAGATCACATAATTGCCGAGAGAATGAGGAGAGAAAAGATTAGCCAGCAGTTCATAGCCCTCTCATCCCTTATTCCAGACCTCAAAAAGGTTCATTTTTCTTTAGTGTACTTAAGTTTTGAGATCATATCACTCAAACATATTTACAGATAGATAGATATATTTGTATTATGGCACTAAGGAATGGTAATTTGTTTGAAGATGGACAAGGTGTCTGTATTGGTGGAAGCTATAAGGTACGTGAAGGAGTTGAAGGAAAAAGTGAAAGTGATGGAGGAACAGGGCAAAAGGAAAAGCCATGAACCGGTGACGTGTGGGAAGAAAGCTCAGGTTTGTGCTGCCGCGGACGAGGATGTCTCAGACACTTCATCAAATTCCGGTGAGTTCGGAAATTCTGACGATCCCTCATCCAAAACAAATCTGTTACTGCCAGAAGTAGAAGCAAGGGTGTCAAAGAAGAACGTGCTGATTCGAATCCTCTGCGAGAAAGAAAAGGCAGTGCTGGCGAACATTTTTAGAGAGGTAGAGAAACTTCATCTCTCAGTCATCAATAGCAGCGCCTTATCTTTCGGCTCCTCTGTTCTCGACACAACCATCGTAGCCGAGGTACCTTTGTTACTATCAAAAAATCATTTCCCTTCAAAACAACTGCACAAGGTTAAAGAACCTTTTTAAATTCAATGGAGTTTTCAAAAAGATGTTTGAAATTTCACAACGAGTGTTGGTTTGTTTCAATTGATGGCAGATGGAAGATGAATTCAACATGAGCGTGAAGGAACTGGCTGGAAATCTGAGAGTAGGACTGATGCAGTTTATGTAG