Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06217 LG1 92150215 92152195 PREDICTED: transcription factor bHLH18-like isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
T/G 92150268 missense_variant p.Thr341Pro
T/A 92150431 intron_variant
G/C 92150433 intron_variant
C/G 92150445 intron_variant
C/A 92150557 intron_variant
C/G 92150569 intron_variant
C/T 92150703 missense_variant p.Cys292Tyr
T/C 92150706 missense_variant p.His291Arg
G/A 92150729 synonymous_variant p.Gly283Gly
C/G 92150812 missense_variant p.Val256Leu
C/T 92150888 synonymous_variant p.Leu230Leu
G/T 92150967 intron_variant
G/C 92150981 intron_variant
G/A 92150998 intron_variant
T/C 92151194 intron_variant
C/T 92151251 intron_variant
A/T 92151256 intron_variant
T/C 92151289 intron_variant
T/C 92151331 intron_variant
G/A 92151377 intron_variant
A/G 92151379 intron_variant
T/A 92151381 intron_variant
C/T 92151572 synonymous_variant p.Lys167Lys
A/G 92151580 missense_variant p.Tyr165His
G/A 92151608 synonymous_variant p.Ser155Ser
G/T 92151667 missense_variant p.Pro136Thr
T/C 92151688 missense_variant p.Asn129Asp
A/G 92151755 synonymous_variant p.Ser106Ser
T/C 92151842 synonymous_variant p.Pro77Pro
T/A 92151910 missense_variant p.Ser55Cys
G/T 92152021 missense_variant p.Pro18Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06217.1
MTQISSTVYLPDFGMEDPTLFHQYPMDSFPFQLDDFDFESFSASPKGSSSHKRLSSESTQNSSLTQSPETSVAPPRPTKQPKTTMSTWSAYGTDMIAPKAASSSSSKIISFDKSSASSVSSQQLYKLDNAKLLKKPKIETGYGENLDFSAVASQSFYDNNSFLDYDKQEKKAAVTMARNPTQAQDHVIAERKRREKLSQRFIALSALVPGLKKTDKATVLEDAIKYVKQLQERVKILEEQSVDKTVESAIFVKRSVVFSGDDSTYSGENSDQSLPEIEARISGKEVLVRLHCDKHSGRTAAILRELENHNLTVQSSSFLPFGNNTLDVTIVAKMGKDYCLTAKDLIRSLSQCLRQLS*


CDS Sequence:
>Vu_06217.1
ATGACACAAATCTCATCGACCGTGTACTTGCCTGACTTTGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACAATGAGTACCTGGAGTGCTTACGGCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCTAAAATCATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATAATGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGCTTCTATGACAACAACAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGTTACAATGGCAAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGACGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTGCAAGAACGGGTAAAGATTCTGGAGGAACAAAGTGTGGATAAAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACTCTGACCAATCACTCCCCGAAATCGAAGCAAGAATTTCTGGCAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTAAGGGAATTAGAGAACCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACGTAACTATTGTTGCTAAGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTCATCAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTCGTAG


Promoter Sequence:
>Vu_06217::LG1:92152195-92154195(-)
AAAGTTGTAGTTCATTGTATCAATTATAAGTAATTAATCTGTCATACTATTGAAATATAATTATATAATTTATGATATTCTATGAATTTAACTTGTAGTGCTCGCGTCAACCGGGAAGCTTTGAGTGGGAATATTATGTGATGAGACACATGCAAAAAATCATATCCGCAAACGTTGTTGACTTATGGGATTTGGTACTGTGTATAATTTATAATTAGCATCTTAAGTATTTATCACTATAAGTTGACTCAAATTGTTCATTGTCTAAATTTTTGGTGCGCATTTCCAATGGGGTATGAGATTCTAAAGAAAGTTTGTGAGCAAGTGGACTTCATTCTTTTTAAGTATTTATAGAAGATGATGTTAGATATTTTGAGTTTTTATGTAAATATTATATGTGTAGTCATTGTTTGATGATGTTATGATGTATAGTCATTATTAGATTATTATATGTTATCTGGATTGTTATGATATTTTATGGAGGTTTATATGTTGTAATGCTTCAACTGGTACAAAATATGGATATTTTTATATTGATTAGTTCTTAAATAAATATAAATCTTTTAAACCGATTAGTTCTTGAATAAGTATAAAAAGTCAGAATCATACATATAAGACATCTCTCTTAGCGAACTTTTTATATTAATTTTAGAATCAATATAGAAAATGAATTTTCTATTTCAATTTAGAATTAATATAAAAAATTAAATAGTTTTTATATTTTTTGTTATTCTTTAATCAATATAAAAAGTTTTTTTTAACTAGTATAAACATTTGTTTTTTTACATTAGTGATAAGTCACTAGTACAATTAATTCTAGGTAAGAAGAATACACTAAGACTATACAATGTGGTTAGATCTTTATAAAAGAGTCCAATGATGCACGATAATAAAAACTTATAACATAATGAAATATTCGTAATTAGAAGTGAACCATGAAAAAAAAGACTTGGTTACCAATGTAAATTTCAATATATTATTATTATTATTATTATTATTGAGTACCATTATTATAAAGAATTTGGTGAGAGGTTAAATGTCAATAATTAAAAAAAGAACCTTTTAGAAATAAAAAGGATAAGGTGTTATTCTTATATTATCTTAACTTTAACTTGCCACCACATTAATATGTATTTTTTAAAATAAAATATATAATTTTACTTTGGTTATTAATTTCTGTAACTCTATATATCCTGAAAACGTGAAATTTATCTTATATCAAACGTACTCGAGTAGAAGATGTAGAGACTAGCATGATAAAAAAGATATTATCTGAAGAATTTAATGTATGGAATAATTAGCACGATAGATAAATTGTTTATTTGGAATGACACGTTTGATAACATGGCAACGATATAAAAAAATCACACGTCACAGAGGGTTCAATTAATTGTTTTGGTTATTTGTTGCGTTGGCAATGGACAAATCATTGACGTGGCTAACCTGACCCAACAAAGCCACGGATTGAAGAACCCACAATTTGACCAACAGAGCTAGCTGTGAGAGTGCCTACTTTCAAACAGTATGAACTAACCCAAGAAAATGTGATTAACATATTCACACGGGTCTCTTCAGAAGCGGGTACCAAGCGTGTACGTGCCCCTTTATAAAACACTCTCACTTTCACCCATTTCTTCCAACGTTCCTCTCATCTTCCAACTTCCAAAACAACAAACACTTCACCGTCGCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGCCTTTCTTTCTTCAATCAAGGTAACCTTTTCTGTCTTCTTGCACCCCATTTTTCCATCATCAACAAAATTTTCAGATTTTTCACACCTTCTCATACCTCATAATTCTGGGTTTTAAAAACTAGAGCATCTTCTATGTTCTATTAATTGACATTTTCTAATTCTCAGCTTAAACTTCAGTTCATCTGGATAATGATATCTTCAAGTTTAAGATTCTACATATTTCTTCCGAGGTTTTGATTGTCTCTTTGTTCTCATTTTCAGTGTACCGAGGTGAAGG


Gene Sequence:
>Vu_06217(-)
ATGACACAAATCTCATCGACCGTGTACTTGCCTGACTTTGTAAGCACAGTGTGTACTCATCTCAACCATCATAACCTTGGATTTGAAGGAAATTAACTAATCACATATATAATTCCTGAATTCTTAAGTCTTACCTTAGTATTTTTTTTCTCGCATCAACAGGGAATGGAGGACCCCACTTTGTTTCATCAATACCCGATGGATTCCTTTCCATTCCAGCTCGATGATTTTGACTTTGAGTCATTCTCCGCGTCCCCAAAGGGTTCTTCCTCTCACAAGCGCTTGAGCTCCGAAAGCACACAAAACTCTTCCCTCACTCAAAGTCCTGAAACTTCTGTTGCCCCACCAAGACCAACCAAGCAACCCAAGACTACAATGAGTACCTGGAGTGCTTACGGCACTGACATGATAGCTCCCAAGGCTGCTTCCTCTTCGTCCTCTAAAATCATCTCCTTTGACAAATCCAGTGCATCTTCTGTTTCTTCCCAACAACTCTACAAACTCGATAATGCAAAACTACTGAAGAAGCCTAAAATTGAAACTGGGTATGGTGAGAACCTGGATTTTTCTGCTGTGGCTTCTCAAAGCTTCTATGACAACAACAGTTTTCTAGACTATGATAAGCAAGAGAAAAAGGCTGCAGTTACAATGGCAAGAAACCCAACCCAAGCTCAAGATCACGTCATAGCCGAAAGAAAACGAAGGGAAAAGCTCAGCCAAAGGTTCATTGCTCTTTCAGCCTTAGTTCCTGGACTCAAGAAGGTACCCATTTTGTAAAACTTCATGCGTGATTTTCTTTTTCATTTTTTATACAATTGCGGCAACAAGTTTTTAACTTAGGACTTCGTATAAATTACTAGGTTAATTCTGATGGATTAATCTTTATGCATGATCCCTACATGTCAAACACAAAGTTCTAAATTGAATTCCCGGACACAGTAAATGTTTTCTGAATTACTGTAATCATAGAAATTATGGCGGTAATAAGTATGGTTACTGAAACCTGTGATTTGAAACCTTGAACAGGTGAAATACGTATCTTCTACTTTAACTGGGTGCAGTTAACTACTAAAACCAATTATTAGTTTTTTCCCTATAATTATGGGATAGGTAATTTTAGTGACAGATTTCAGTCACTAATCTTGATTTTAATTCTGCACGCAGAAACAATATTTGATTGCAATGTGCTATGTATAACTGGTATCATGTTTGTACGAGAATATTCTTTCTTATTAAACAATGAATTTATGCATGCAGACGGACAAGGCTACCGTCCTGGAAGATGCTATAAAGTACGTGAAACAATTGCAAGAACGGGTAAAGATTCTGGAGGAACAAAGTGTGGATAAAACAGTTGAATCTGCAATCTTTGTGAAGAGATCTGTTGTCTTCTCCGGAGATGACAGCACCTACTCTGGTGAAAACTCTGACCAATCACTCCCCGAAATCGAAGCAAGAATTTCTGGCAAAGAGGTACTCGTCAGGCTCCACTGCGACAAACACAGTGGACGAACAGCTGCTATACTAAGGGAATTAGAGAACCATAATCTCACAGTTCAGAGTAGCAGCTTTTTGCCCTTCGGAAATAACACTCTTGACGTAACTATTGTTGCTAAGGTAAATATAGTAACTTCAATCGTTAAAGAATCATCTTCAATATTTCCGTTGAGTCATAGACATTATAAGAAATTATCTTTTAGTCTCAGGTCATCATGATCTCCGTCAATCTTTACATGTTACAAAACTAATTGTTGCTAGTTTTCTAAAATTAAAAAAAAAAAAATCAATTATGTATTATGTGAAGATTGATCAGAATCTCAGTCAGATGCATCATGTAAAATGTGATAATTTCTCGCAAACTAGGAGCACACTTGTTGATCAAACTCGTGTTTTTTTTTTTTTGCAGATGGGGAAGGACTACTGCTTGACTGCAAAAGATCTCATCAGAAGCTTAAGTCAGTGTTTGAGGCAGCTTTCGTAG