Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06166 LG1 91473934 91477304 PREDICTED: telomere repeat-binding factor 2 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   nucleosome assembly, nucleosome assembly, organelle organization
Cellular Component   is active in   nucleosome
Cellular Component   located in   nucleus, nucleus, nucleolus, nucleus, chromatin, nucleus
Molecular Function   enables   double-stranded telomeric DNA binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding, protein homodimerization activity, protein binding, single-stranded telomeric DNA binding, protein homodimerization activity, telomeric DNA binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/T 91473964 synonymous_variant p.Ala283Ala
A/T 91474368 intron_variant
C/A 91474408 intron_variant
C/A 91474493 intron_variant
A/C 91474586 intron_variant
G/A 91474664 intron_variant
C/T 91474754 intron_variant
G/A 91475170 intron_variant
T/C 91475176 intron_variant
T/C 91475188 intron_variant
A/T 91475677 intron_variant
C/T 91475701 intron_variant
G/A 91476054 intron_variant
G/T 91476758 missense_variant p.Pro109Thr
A/G 91477007 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06166.1
MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRSLPAPKIDNNHMALSTVVHHDEVLDTKPLAVSGGPLQSPSFKEQISRLVDNHILEAIVNMKEQKGSDKGAIISYMEEKYRCPPNISKLLSTKLKHMVASGKIIKEKHKYRIASSSVVSEKRRSTSLEGRSKDPSEANKNVDVNILSKSQIDEEISKVKGLTAQEAAAAAAKAVAEAEAAIAQAEAAAREAEAAEAEAEAAQVFAKAAMKALKCKMLHIW*


CDS Sequence:
>Vu_06166.1
ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCTTTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTTAGTGCTATTTTGCGCATGCGTTCAAACGTAGATCTTAAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAGCCTACCTGCCCCCAAAATTGACAATAACCATATGGCTTTAAGTACTGTCGTTCATCATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCAATCTCCTAGTTTTAAAGAACAAATATCAAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAAGGTGCCATTATTTCTTACATGGAGGAAAAGTATCGGTGTCCACCAAATATCAGTAAATTACTGTCAACCAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGAGAAGCATAAATACAGGATAGCATCAAGTTCAGTTGTCTCTGAGAAAAGAAGGTCCACGTCATTGGAAGGAAGGTCCAAAGATCCTTCAGAAGCAAATAAGAATGTTGATGTCAACATCCTTTCAAAATCCCAAATTGATGAAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCCGTGGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG


Promoter Sequence:
>Vu_06166::LG1:91477304-91479304(-)
TGCATCCCACTTAAAAAAAATTCTGTTTTCTTTCTTTTTATTATCTAAAAGTCATTTCAGAAAATTAAAAATATTTTAAATTGTGTAATTTAAAAATTATTTTTCTTTCAACAATTATCTATCAAAACTTTAGTATTTTTTAATTTGAGAGAAATGTATGTCTCTTTAAATCAACGCTTGTAATGAAAAACAATTTTACTTTTTTTTTTTGCAATTATTGTAGTAAGTAAAAACAAAAGAAAAAAAAAATCCATAGTACTATGAATCACCATTTATGTTGTCAAAATTTAAATTCAAGCCAAAACAAAAGAGTTATAACAAGAAGTGAAACATATTAAATAAATACAGTCCATATCATTTAAATGGATCACCAAACCTTAACGATTAAATCACGCTAAAAAAACACAGTTACTTTGATAGCAATTTTTTAGAAAAAACTATTTTACACCTTATTTTTTTACTAATGTATTTATTCTGAAAATAACTATTTTAAATAAGAAATATAATAAAAATAAAATTTTACTTTAAAAAAAATACCCTTTTCTACCACCAAGTTACTCTTCTTAAATATGCAATTACTTATACTTTAATTTTGTATGATGAATTTAAAACACGATTTTGTACTAAATCAATTAATTTTTAAGAAGTTAATTCACTTAATAGTCCTTTTCAATTTAATAATTTGATTTAAAAAATTTAATTTAAAAAAAAAAATAGAAGGGCTGACTCAATATTTATCTAACTATAAAATAAACTTTAAAAGGAAACATTTTAAATTGATATAAATACCTTATTAAAACTAAAATGATTTAATCTGGGGATTATTATTTTAAATTTTTTTGAAAGATGTAATCAGTTATTAAATATTATGTACTAATATTAATTTTGAATTTAAAAACAATATTTAATTCTTAAGTTAATTTTTATCAACTATTTTTTAGTTAGTGCATGTTAGATTTGTATATTTTTCCAAAATAGTTTTTTATTACATTACCTTTCCGTTTATTGAGAGAACAACTTAGAAAGTGTAGAATATTTTGACGACTAAATCCCCGGTTTAATCAGAAACATTGTTTTGTCAAGGTTTACTCAAGAGACATAAATAGAGACACTTTTTATTTATTTATTTTATATTTCACCTCGATTGAATAAAACTCATATCATGTGTCTCATTCTTCTCTGGTTTTAGGCAAAATCGTTTGGGATTATTCATTTTCTGTGTGTAAATACTTCAACTTTTCCAATTCTCACCGTCGTCCGGTTATTCGGTACATCTCTCTCCAGCGATTCTTTCAATTATTTTTCACCCTTTGGTTTTTAGTTTCCCCCCAAAGAAAGCTGTAATTTTGGCATTCATCAGAAGTATAGTGTGGCATTTCTCTTCCCAGTTGAATGCATGTCTTTCTAGTTATGCAGTTGTGATTTTTTAACTTAAATGTTGGTACTTTGTCCGTCCGAGTTGAAAGGCTGTTCCTTTTCGTTCTCATTCAGTTCAACGTGAATTTAATTCGATGGATTCAATGAAATTTGAAGCTGAGACATTTAAATCCTCAGATTTTGCATTTTGCATAATACATAATTCTAGATCATTTTAGGTTTTTCCCAAGCCACACCTTGCTTTCAGGAGGCTTAATAGCACAGGCATTTCAAGAGTACATTGCAAAATTGTTTCTGCATGGTTCTTACAATGTTACAATTCACTTTACCAGTTATATATTAGAACATCGGGGTATTAGGGATGACATTGAAGTGAATATTTATGATTTATCTGAGGAGTTTATTTATTTGATTGATTTCTTGTTTTATTTATGAACCTTGAAAATAACATGTTGACAAGTGAAAATATTTATTTTCTTGTTGGGGTTGTTTGGTGGGCAACAGTAGTCAATTTTTTTTCTTTTTCAAAGATGCACTAGTAGAAGAGGGAAGTACCGCATTCCCTTTTCCTCTAAAGTTGAAGCAAAGAGTAGTCTGTCATAAAAGCGGCAACCTTTCCTTCA


Gene Sequence:
>Vu_06166(-)
ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCTGCTTTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACCATACTTACAGATCCTGAATTTAGTGCTATTTTGCGCATGCGTTCAAACGTAGATCTTAAGGTATGTCTTTGCCATAGCCCAGCAGCTTGTGGGAAGTGTTGCATGAAGGAAGTTTTATTCTTCTATCTTTTTTTATCTGGTTGGGAAGCTTATAATTACGCTAGCCAAATGATTATATGTACATGGCACCATAAAATCAGTATTTAATGTTACTTCCCTTTGCTACAATATAATTTCCAAAGTTTTGCTGTACTTGTTTATATGCTTTTGAACTGTGAACAGGATAAATGGAGGAATATAAATGTCACAGCAATATGGGGATCCCGGCAGAAGGCAAAACTTGCTCTTAAGAGGAGCCTACCTGCCCCCAAAATTGACAATAACCATATGGCTTTAAGTACTGTCGTTCATCATGATGAAGTTCTTGATACTAAGCCTTTAGCAGTTTCTGGTGGACCATTGCAATCTCCTAGTTTTAAAGAACAAATATCAAGGTTACAGAATATTCAGTTAATATATCTGCCATTTATCATCTAGATAAAATAAATTATCTGTGACTGTGGTCCTGGAATTGTTTAATTTTGTTGGTGAATTGTGTCTGGAGATTTTACACTTGTAGACGTTACATCCCTTACAAGTTATTTGTTTTAAGAGAAGCTGTGTGCTGTTTCCCAACTTTTGCAAATGAATACATTACCGGACTTTTCTACATTCATGTGTTGTTATTTCCAATGTGTCTTTCTGTTTTAAGCATGGCGATGACATATGAAAAAGATGGTTTTGTTACCTATCTGGAATAACGAAAGAAAAGAGGAATAAAAAGATCATGGATCATGTTAGCTATCTAATGGGTCGCTACTTTTGCATTTTTGAGGGGAAAATCATATCCTATGTTAGATAATTATTTGCTTGCAATTCTTTTAAACTATTATTTGAATATCAGAAAATTCAAATCATATATGTCACCATGTACAAATATTTCTATCTCTTACCTTTTTGTCTTTTTTATTTTCTATGCATGCATCTAAAAGATACACCTCAAAATCAAAGGGGATAACTTTTTATGCTTCCTGTAGGAAAATACTATAAATAATTAGCAATGATTTGTACTTGGACTCCTTTTCTAAAGGAATTCATGCCTATGTATATTTATCTTAATGCTCTCACGTTCCAATGTGCATTAATTCTAGATTAAAATTTCATGGCTGTATACATAGGTTCTAATTATAAGTTGCAACTGTAAATATTTGTAAACTTTTTTCCTGTTTGATGTTACTTCTAATAACATTTCATCTTGTTCTGAATGTTGAAATTATGCAGCAATATATACTTTTGACTTATGAAAGCAATGATGGTGTCAGGTTGGTGGATAATCATATATTGGAGGCCATTGTCAACATGAAGGAGCAAAAGGGTTCTGACAAAGGTGCCATTATTTCTTACATGGAGGTATTTCTACTTGACTTTTCAAATGATTGTAAAATCTAAACATCAATGAATGTTATCATCCCCTGAAGTAACCAATAGTTTCTTTTTTTGCCATGTTATTTAAGTATTGACTGATGTCTAACATCAAATAAAAAATATTTATTGATATGATGATTATTGTCATGTCAATTGTTGTTTAATATCTTTTTGTCAGAAAATCTTTTTGCGTAAAACATAATAAAAACTGTTATAGTTTTTCAAATACAAAATTTAATTAATATATAATAAATTTAACAGCAGAATATTTATTATAAAGTTTCATATTATTCTATTATCACAACTTTTGACAGGACTAACTCCGCGTCTCATGTTTCTAGAGTTATTATTTTAGTTAGTGATCATGAATATGTGCTTTAATATATGTCTGTTTTAGTTGCATACACTATGTGATCTCATTTTGTCTGCATTAAACTGGCAAGTGACAACTGTTAGTTGTTTTCTGTCTTCAATGGTTAAAAAATAGCATAATTCAACCCATCATACTATGCTATATGTTGCATATATTGTCTTTGGAAATGATCTGTAATTTACCTTTAGAATATTGGTGAATAGTCAACACAGCTAAGCAATATAATGACTGTTTACATGTCTGCATATGTGCATCAAAATTCAAAAGTAATTTTGGAATTTTTTCATGTGTTTAGGAAAAGTATCGGTGTCCACCAAATATCAGTAAATTACTGTCAACCAAACTGAAGCATATGGTAGCAAGTGGCAAAATAATCAAGGTAGTTTTACTGTGAGAAGCTCTGCCTGGAAACCTGCATAATAGACACAGTCAATCTGGTTTGAAGGCCGTATTGAAGTTTTTCATGTATGAAAGCAATAAATATTTGATGTTGCTGAAAGTCATTAAAAGAAAATGATTGGCAATGAAGTTAATTGGTTATATCATGTTAAGACTGAGCAATTGGAATAGGAAACCAAATGGTGTTAGATTTTCTTAGAACTGACAATATAATAGAAGATTGAGATCTGAACAGTGTTCAAATGGTTCCAAGCACCTTACAATCGTCAAAACAGAAATAAAGGAAAACCTTGAGACTGAGAGATACCCCTCAGCTCAGCCTTGCATCAACCACTCAATTGAGCTTTTTAATAACCTCCTGTTATTTCCTTCCCCCCTGCCACCTACTTAATTGCCATTTTGTCCATTTTGTTACTTCCCTCTCTTTCCCTCTTCCAAATTCCATCATAGCTGCCTTAATCAGTTCCATACTGCCTTTGGGGCCAGATCACACTCTCCTTTCTTTTTCTCCTATTTAATTGTGAAATGGGCCTAGCAATTGCAATGTGCATAGATGGGCACTATCTTAGGGAGGAGAGTTCTATTTGAGTTGATAAATTGCCCCATACAATAAACAGATATTCCTTTGACAGGTTCGTTTGGCATCAAAATTCAATATATGATGAGTTGATCATGTGTATGACATATCTGTTGACAGGAGAAGCATAAATACAGGATAGCATCAAGTTCAGTTGTCTCTGAGAAAAGAAGGTCCACGTCATTGGAAGGAAGGTCCAAAGATCCTTCAGAAGCAAATAAGAATGTTGATGTCAACATCCTTTCAAAATCCCAAATTGATGAAGAGATATCAAAAGTGAAGGGCTTGACAGCTCAAGAGGCAGCTGCTGCAGCTGCAAAAGCCGTGGCAGAGGCAGAGGCTGCAATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCTGAGGCTGCCCAAGTGTTTGCAAAAGCAGCAATGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG