Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06162 LG1 91432349 91434265 PREDICTED: protein SHORT-ROOT-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 91432442 missense_variant p.Gln13Leu
G/A 91432610 missense_variant p.Arg69Lys
G/A 91432663 missense_variant p.Ala87Thr
C/T 91432683 synonymous_variant p.Thr93Thr
T/A 91432762 missense_variant p.Ser120Thr
A/T 91432782 missense_variant p.Glu126Asp
G/T 91432786 missense_variant p.Ala128Ser
T/C 91432812 synonymous_variant p.Ser136Ser
T/G 91432815 synonymous_variant p.Thr137Thr
G/A 91432817 missense_variant p.Arg138His
C/A 91432825 missense_variant p.Gln141Lys
C/G 91432851 synonymous_variant p.Leu149Leu
A/G 91432881 synonymous_variant p.Lys159Lys
C/T 91432886 missense_variant p.Ala161Val
G/C 91432887 synonymous_variant p.Ala161Ala
C/T 91432923 synonymous_variant p.Thr173Thr
C/T 91432926 synonymous_variant p.Asp174Asp
G/A 91432930 missense_variant p.Gly176Arg
C/A 91433196 synonymous_variant p.Thr264Thr
C/T 91433322 synonymous_variant p.Gly306Gly
T/C 91433847 synonymous_variant p.Leu481Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06162.1
MDTLFRLVSFQQQQHHQPQPDPSLNSTTSRTSSSSRSSRQNYYHYSHQEDEECFNFYMDEEDLSSSSSRHYYPYHNVSTTTTTTTTANTFSTTANTDYSYSFSPTPPLPDFNFQFSPNWSHNLLLETARAFADNNSTRLHQLLWMLNELSSPYGDTDQKLAAYFLQALFSRVTDAGDRTYRTLASASEKTCSFESTRKTVLKFQEVSPWTTFGHVASNGAILEALEGNPKLHILDISNTYCTQWPTLLEALATRTDETPHLRLTTVVTGRTGNSVQRVMKEIGTRMEKFARLMGVPFKFNVVHHAGDLSDLNFSQLNLKDDEALAINCVNALHSVSPAGNGRDAFISSLQGLQPRIVTVVEEEADLDVGIEGYEFVRGFEECLRWFRVYFEALDESFAKTCNERLMLERAAGRAVVDLVACSPADSLERRETAARWGTRLHGGGLSAVPFSEEVCDDVRALLRRYKEGWSMVPCSDTGIFLSWKETPVVWASAWRP*


CDS Sequence:
>Vu_06162.1
ATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCAGACAAAACTACTACCATTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTGTCCTCGTCTTCTTCCAGACACTACTACCCTTACCACAACGTATCCACCACCACCACCACCACCACCACAGCCAACACCTTCAGCACCACCGCCAACACCGATTACTCCTACTCCTTCTCTCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACCGCACGCGCCTTCGCCGACAACAATAGTACTCGCCTCCACCAGCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAACTCGCGGCGTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCTTGGCCTCCGCATCGGAGAAAACATGCTCCTTTGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATTAGCAACACCTATTGCACTCAATGGCCAACCCTTCTGGAGGCATTGGCAACTCGAACCGACGAAACTCCGCACCTCAGGTTAACCACAGTCGTCACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCTATCAACTGCGTGAACGCGCTGCATTCGGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCGTCGCTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGCTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTAAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCGAAGACGTGCAACGAGAGGCTTATGCTGGAGCGCGCGGCAGGGAGGGCTGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCGCTGGAGCGTCGGGAGACGGCGGCGCGGTGGGGGACGCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAA


Promoter Sequence:
>Vu_06162::LG1:91430349-91432349(+)
AACTTATATTTTCAGTAAATTTTTAAACTGTGACCCTACATATGCATATTAAACTGTGAACCATGGTACAAGTAGTTTTAAAATGATGTTGGGGTGATGGGTGCTAGTTGGGGAAGCCTTTATTCAGTTGAAAGATGGAAGCAGAGTATGGATCCCTTTCGGTCTCACCCACCATCCCCACAAAACAGGGGAAGAGAAAAGAGAAGAAGGAAAAAGCAGAACAGGAAAAGCAAGATGAAAGAAAGGCCATGAGTTTCAGTATGGCCGTAATAACCTGTCTCGTCCTGTCTGGGATCAATGTGACTTAGCTGCAAATTAAAAATATGGATTCAACTCCTAGGCCCACTTCAAGACATGGGGACAAAGAGTTCAAACATGGATTTCGCCCAATCATTGATGATGCCAAACAAACAACTCCTTAACATTTCCAACCAACGTCTCCTAACCTCTCAATAATCAAATCGTCTCACTTAAATGCGTCGTTAACAAAATATAATTAAACTCCAATCGAATTTGTAGATGAGAAGGGATTGGAGATATATATAGTCTACGCAAGGTGGGGCTGGGGGGTTTACTTACTTTTAGGGGACGTTCAATAAAGCATAATTCTTGGTAGAAGTTGTATGCGATAATGATAAATGAGTTTTAGATAAAAGTAAAACAGCTGGAATGAAGTGGGATACAAACATTTCGAGATTATGGAAGCAATGGTTGGGTTGCTTTGGTATCAAAAATTCAAAGAAATCGTAGAGTTTTGGTGTAGGCCGAGGATTGAGGTAAACAGTGAATACTTGTAAAACCATCCACACCAAATAGGTATGGAGAAGACAAAGAAAGGCATGCCACCCTAGAATTTGGAGAAGTGGAACATTTGTATTGGTATAATACAACATCATCATTATCTAAAGGTTGGTTTGTTAACACGACATTATGATATAACGCAGTTATCTCTATAAAACCTTTATTAAATGAAACAGAAATATTAAATATGTAGTACTTTTTATGTTCATAGTGTAATCCTTTGATAGTAACGTTTTTTTTGAAGGGTTAATTTTGATAGAGGAGGAGGAGGAGTTGGGTGTGTTGTGTTAGTAATAAAATAGGAAAATTGTTAAAAAAACATTTTCCATAAAATAGAAAGAGAAAAGTGGATTGGAAAATTGGCAGAGTTTGGAGAGTGATTAGGAGGCAGGGAACGTGAGTGGGTTGTGTTACTGCTACGGGGAAGATAGTGGGTTTGATGATGATGACTCACGCCGGCAGCTTTTACTACTCTCTCAAACCCCAATTGGCAGTTGGGCACGCCTGCTCCCACTCATCCAATACTCCTAAATTCTCTCTCTTTCTCTATTTTCTTGTGCTTAATTAATTAATTAATTAATTCTTTATTTATTTGTTTATTTATTTATCTCTCTCTAAAGAAAGAAAAGCTAGCCCACTATCTCTTCCTTCGTTGCTTTTTCTCACACTTTCATATTTTTCCATCTTTTGTCAGAGAGAATTCTATTCTAAGCATCACCTAGCTAGCTCACGACCCTACTAGATTTTTCAAGCTACTCACCAACAAAACTCATCTCAGTCAATCTCCCGTCCCCTCCCTCCCCACCCATTTTTCAATAACATCCAATTAACCTTCCACACTCCATTACATTAAGCTAAACCCCAACCAATTCAAACTATATATCCTTCATTTCTTACCATCCCATCAAATATATATTAAAAATCTTTTCCGCAATTAAATATTTTAATTTATTAACTTATCTTATAAATAACTTGCTTTAATATAATTTCGTTTCTATATATGTTAGATTGGGTGACAACTAAACCCCTTGAGCTCCACTATGTATTTTTTTTATATATATATATATATTTAGAAAAATTAACCTAGTTTGTAAGGTAAGTAGAATCTATCGAAATTTGACCAAGTTCTTCCCCCAATCATTCCCCAACAGTGCCCCAATTCCCACTGTTAAAAACACGTTTGGTCTGGTGGTGCTGAG


Gene Sequence:
>Vu_06162(+)
GAAGCAGCTAAGCTGAGCTACCTAAGAGAGTCACATTGTTTATTGATGTGGGTTAAATGGATACCTTGTTTAGGCTAGTAAGTTTTCAACAGCAACAACACCATCAACCACAACCCGATCCATCCCTCAACTCCACCACCAGCAGAACTTCTAGCAGTTCCAGATCCTCCAGACAAAACTACTACCATTACTCCCACCAAGAAGACGAAGAATGCTTCAACTTTTACATGGATGAAGAAGACTTGTCCTCGTCTTCTTCCAGACACTACTACCCTTACCACAACGTATCCACCACCACCACCACCACCACCACAGCCAACACCTTCAGCACCACCGCCAACACCGATTACTCCTACTCCTTCTCTCCCACCCCTCCCCTCCCCGACTTCAACTTCCAATTCTCCCCCAACTGGTCCCACAACCTCCTCCTCGAAACCGCACGCGCCTTCGCCGACAACAATAGTACTCGCCTCCACCAGCTCCTCTGGATGCTCAACGAACTCAGCTCCCCATACGGCGACACCGATCAAAAACTCGCGGCGTATTTCCTCCAAGCCCTGTTCAGCCGCGTCACCGACGCGGGAGACCGAACCTACCGAACCTTGGCCTCCGCATCGGAGAAAACATGCTCCTTTGAGTCAACGAGGAAGACGGTGTTGAAATTCCAAGAAGTCAGCCCCTGGACAACTTTCGGACACGTGGCGTCCAACGGCGCCATCTTAGAAGCCTTAGAAGGAAACCCCAAATTGCACATACTTGACATTAGCAACACCTATTGCACTCAATGGCCAACCCTTCTGGAGGCATTGGCAACTCGAACCGACGAAACTCCGCACCTCAGGTTAACCACAGTCGTCACCGGGAGAACCGGTAACTCCGTGCAGCGCGTCATGAAGGAAATCGGAACAAGAATGGAGAAGTTCGCGCGACTCATGGGCGTTCCGTTCAAGTTCAACGTCGTTCATCACGCCGGCGATCTCTCCGACCTCAATTTCTCTCAACTCAACCTCAAAGACGACGAGGCCCTGGCTATCAACTGCGTGAACGCGCTGCATTCGGTTTCCCCGGCGGGGAACGGCCGCGACGCGTTTATATCGTCGCTGCAAGGGTTGCAGCCGAGGATCGTGACGGTGGTGGAGGAGGAGGCGGATTTGGACGTGGGAATCGAGGGCTACGAGTTCGTGAGAGGTTTCGAGGAGTGTTTAAGGTGGTTTAGGGTTTACTTCGAGGCGCTGGACGAGAGTTTCGCGAAGACGTGCAACGAGAGGCTTATGCTGGAGCGCGCGGCAGGGAGGGCTGTGGTGGACCTGGTGGCGTGTTCGCCAGCGGATTCGCTGGAGCGTCGGGAGACGGCGGCGCGGTGGGGGACGCGGCTGCATGGGGGAGGGCTAAGCGCGGTGCCGTTCAGCGAAGAGGTTTGCGACGACGTTAGGGCGCTGTTGAGGAGGTACAAGGAGGGTTGGTCGATGGTACCGTGCTCCGACACCGGAATATTCCTTTCGTGGAAGGAAACTCCGGTGGTGTGGGCCAGTGCATGGAGGCCTTAACGTAAACTCACGCTTGATGATGATCGTGTCGCAATCGTATCATGTGGCTGGCTTTGACATGGATGAATGCCTCGCACGTGTGCTTGGTTTTTTTGGCACGTGCGCAAGGATGATGGAGTTTTCTTTCAGTGTTAATTATTGGGCTTTATTTATTTACTTCCTCTTTTGTTTTTTTGGTTAAATATATAAGTTTGGTAAGACACCGGGATTCATGGGCGTTTGCTTGCGTTAAAAAGGAACTAAGTAAATTATTTTTTTGTTAACATTTTATGATTGATTTTTTGTTTACCAAACAATATATAGCTTGTGGCTTTCCATCCATCCATATTTGTATGAACTATATATATATAATATAAAGTAATTGATTGAC