Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_06145	LG1	91226031	91227392	PREDICTED: scarecrow-like protein 32	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus
Molecular Function	enables	protein binding, sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/T	91226154	synonymous_variant	p.Gly413Gly
G/T	91226731	missense_variant	p.Ser221Tyr
G/C	91226814	missense_variant	p.Asp193Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_06145.1

MNKNQIPRTRPWPAGFPTSKALTNFADANCMEQLLLHCANAIQTNDVTLAQQILWVLNNIASPDGDSNQRLASSFLRALTARAAQTGTCKMLVAVADHARTNLSIDTHKFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIASRHEVPPLIKLTVADATFRDIPPMLDLSYDELGAKLVNFARSRNVVMEFRVVSSTYQDGFADLIEQLRVQQQHFVYAVEPRPCEALVINCHMMLHYIPDETLHAMPETDLTSLLYDSSSAAGSSSAISVTSTSSLRSLFLKSLRGLDPTVVILVDEDADLTSNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAQEGVQRVERVEPKNRWEQRMKNANFQGVAFSEDSVGEVKGMLDEHAAGWGLKREDEHIVLTWKGHNVVFASAWLPV*

CDS Sequence:
>Vu_06145.1

ATGAACAAAAACCAAATCCCTAGGACTAGGCCCTGGCCTGCAGGCTTTCCTACCTCCAAGGCTTTAACCAACTTCGCCGACGCTAACTGCATGGAACAGTTACTTCTTCACTGTGCCAACGCTATTCAAACCAACGACGTAACCCTCGCACAGCAAATCCTTTGGGTCCTCAACAACATAGCATCCCCCGACGGCGACTCCAATCAACGCCTTGCCTCCAGCTTCCTCCGTGCCCTCACTGCACGTGCAGCCCAAACCGGCACCTGCAAGATGCTCGTCGCCGTAGCCGATCACGCCCGCACCAACCTCTCCATAGACACCCACAAGTTCTCCGTCATCGAGCTCGCCAACTTCGTCGACCTAACTCCCTGGCACCGCTTCGGGTTCACCGCTGCCAACGCCGCCATCCTAGAAGCCACTGAGGGTTTCTCCGTCATCCACATCGTCGATCTCAGCCTCACGCATTGCATGCAGATTCCGACGCTCATCGACGCCATCGCTAGCCGCCACGAGGTCCCTCCTCTCATCAAACTCACTGTCGCCGATGCCACCTTCAGAGACATCCCTCCTATGCTCGACCTCTCCTACGACGAACTCGGCGCCAAGTTGGTCAATTTCGCAAGGTCCAGGAACGTCGTCATGGAGTTCAGAGTGGTTTCTTCCACTTACCAAGATGGCTTTGCGGATTTGATAGAACAGTTAAGAGTGCAACAACAGCATTTTGTTTATGCAGTAGAACCTCGTCCCTGTGAGGCTTTGGTTATCAACTGTCACATGATGCTTCACTACATCCCCGACGAAACCCTACACGCGATGCCTGAAACTGACTTAACCTCTTTGCTCTACGATTCTTCTTCGGCTGCTGGTTCTTCTTCTGCCATTAGTGTTACTTCCACTTCCTCGCTGCGATCGTTGTTCCTTAAGTCCCTGCGGGGTTTAGATCCAACGGTTGTAATATTGGTGGATGAAGATGCAGATTTGACATCGAATAACTTGGTTTGCAGGCTAAGATCTGCGTTTAACTATCTGTGGATACCATACGACACTGTGGACACGTTCCTTCCACGAGGGAGCAAGCAAAGGCAGTGGTACGAAGCAGACATTTGCTGGAAGATTGAGAACGTGATAGCGCAGGAAGGGGTTCAGAGGGTGGAGAGGGTTGAGCCTAAAAACAGGTGGGAGCAGCGAATGAAGAACGCGAACTTCCAAGGAGTGGCTTTTAGTGAGGACTCTGTTGGGGAGGTGAAGGGCATGCTTGATGAGCATGCTGCGGGGTGGGGATTGAAGAGGGAAGATGAACACATTGTCCTCACTTGGAAAGGACACAACGTGGTCTTTGCCTCTGCTTGGTTACCTGTTTGA

Promoter Sequence:
>Vu_06145::LG1:91227392-91229392(-)

TTACGCTAAATAATTATATAAGTCGGATTTAAATCATAATAGGATTCTATAATTACAAAAGTTAATTCACTGATATTAATTTTTAAAGGCCAACTTTTAGGGTGGGTTAAGTCTATTATAATTCATTACTAACTTTAAAGTTAAAACAATTTATTTAGCCTCATCTGTTTTTATTTTAAAATTTATTTAATTTAGTTTATAACACTGATAAAATCTATTTTTAATATTATTTAGTTTCATCAAGAGTAACTTCAAAAAAATCTCAAATAGATTTCAAACATTGTCCAATTTTCTTTACAAGAAAACTTTTACCATGATTAAAATTTGATAGCTTAGTGAAATTCGTATTCATCATGTATTGTTGTTTTCTTTCTGGGTCTCCAATAGGAATGAACCAATATATGCCTGTTGGAAATAGTTTAGTATGGTAATAAATGTGTAATCAACAAGTCATCTATCATCTTATCTTAAGTCTTTATTTATTATTGTCAATCTAATTATGACCTAAATATACTATACTAGTGTGAGGAATTTCGGCTGTTTTGTTGTTTAAAAAGTTGACCATCTTACAAGATATACATTACAATTATAAATACAACCTTTTCCAAACTTGTCTTTTACATTAAGTTGACCACCACATTTTTTTACCAATTACATCCACCTTTATATGTTTGCACAAAACTGATCAGGAAAAAAAAGTAAAGTTTAAAATATGAATTTGTAGAAATTCCAATTTGAGAAAAGTATTCGTGAATCTCATGTAAAAAAATCAATTTTGTTTGAAGAATAAAAAATCAAGTGATAAAGATTTTTTAAATGAAATGTTTTTTTAAATAAATAAATTGTTACTATAGAAATATAAAACTCACACTAACAGTATTGTAATTATCCTTAAAAAATGATTGAACTTTATTATCTAAATAGATTAAAACGGTTCCAACAAACAAATTTTTAAGATATTATTAGGAAAGAGGACTAAAGTTGTAACAAATTTGTGTGTAGATGAAATTTGAAAATGAAAATGTGGAAGATTAAGATTAAGTACGAAGAAAAGAGCATGCGAAGGTGAGGCGCAGACGGAGGGAATAGTTGTAGTTGTCGGATGTTAAGTATCTGAATTAATGAGGGGATCCAAGGTAGGTGGGCATGCATGGTGATGGTGTGTTATTTTGGCAAGATTTACAGAGAATGGCAGTGAGAAAATATAGCACATTCTGATGGTGATGAAAAAATGATTTGTTCAATTATGTGATGACCCGTGAGAGAGTGAGCCAAAAGCTTAACTGCCTCAAATCCCTCTCACAGTGCCCACCATTATACGACAAAACCCCAACTCCCATGTACAAACAATTTGCTGGCCGGCTGCTTCACATGCCTCCAAAATCTAACACGAGCAGTGCTCCTACAGCTACAGGTACTATCCTCTCTCCACTGCCTCCCTCTTATATTTCATCTCTCTTTCTAAAGAAACCAAACCAAAATGGGGAAAAGATAAAAAAAGTTAATTATCTCTGGAGAGTGGAGTGGGATTAGCACCTTTTGTAGCCATGAAAGTGATGTTCTCAGCACTACTCCTTTTGCCATCTGAAAAAGCCTGAACTTCCCCTAGAAGGGTCTCTTTTGCCCAATTTGACTTCAAATATGTTTTCTCGGGGCGAGAGTTTCCCCTCTACCGATCAGTCTCTGTTGGGAGGAACCATAATATAATCCCCCACGAAAAAGCTGAACTGTCTATTTTCTGTGCAGAATTCTCCCAAACTCTACTGCCAATTTTCACCCACAACTTGGATCGCTTCCCGATGGCAAAGGCACCCACTACTAGTCAGGTCACTTTCCCTTTTCCCCTCTTCTCTCCTTAATTCTCCTTTCCCCTCTGCCCCCAACTTTCTTCTTCACCCTTTTAAGTCATTCATTCACTCACTCATTCATTCATTCCACCCACACTGTCCATGACGCAATTCACACCCTTCCACCAAATCACACCCCTCCCCAACCCTACC

Gene Sequence:

>Vu_06145(-)