Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06111 LG1 90803007 90805922 PREDICTED: LOW QUALITY PROTEIN: probable receptor-like protein kinase At5g24010
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 90803040 3_prime_UTR_variant
A/G 90803067 3_prime_UTR_variant
C/A 90803268 3_prime_UTR_variant
T/A 90803306 missense_variant p.Ile803Leu
A/T 90803307 synonymous_variant p.Ser802Ser
G/C 90803314 stop_gained p.Ser800*
A/T 90803319 synonymous_variant p.Leu798Leu
G/T 90803380 missense_variant p.Pro778Gln
T/G 90803387 missense_variant p.Thr776Pro
T/C 90803580 synonymous_variant p.Ala711Ala
C/G 90803592 missense_variant p.Gln707His
C/A 90803637 synonymous_variant p.Val692Val
C/G 90803655 synonymous_variant p.Gly686Gly
T/G 90803838 synonymous_variant p.Ser625Ser
G/A 90803882 missense_variant p.His611Tyr
A/G 90804318 synonymous_variant p.Gly465Gly
A/G 90804321 synonymous_variant p.His464His
C/T 90804330 synonymous_variant p.Gly461Gly
C/G 90804332 missense_variant p.Gly461Arg
C/G 90804334 missense_variant p.Gly460Ala
A/G 90804339 synonymous_variant p.Asn458Asn
T/A 90804343 missense_variant p.Asp457Val
C/A 90804344 missense_variant p.Asp457Tyr
G/C 90804347 missense_variant p.Leu456Val
G/T 90804353 missense_variant p.Pro454Thr
G/A 90804356 synonymous_variant p.Leu453Leu
A/T 90804365 missense_variant p.Ser450Thr
G/A 90804373 missense_variant p.Ala447Val
C/A 90804384 missense_variant p.Lys443Asn
T/C 90804389 missense_variant p.Lys442Glu
T/C 90804393 synonymous_variant p.Lys440Lys
C/A 90804397 missense_variant p.Cys439Phe
C/A,* 90804402 missense_variant p.Trp437Cys
C/T 90804403 stop_gained p.Trp437*
A/C 90804423 synonymous_variant p.Val430Val
A/C 90804424 missense_variant p.Val430Gly
T/C 90804428 missense_variant p.Ile429Val
C/A 90804432 synonymous_variant p.Val427Val
C/A 90804443 missense_variant p.Val424Leu
A/C 90804449 missense_variant p.Cys422Gly
T/C 90804484 missense_variant p.Tyr410Cys
A/G 90804520 missense_variant p.Phe398Ser
T/A 90804545 missense_variant p.Met390Leu
C/T 90804552 synonymous_variant p.Leu387Leu
G/T 90804574 missense_variant p.Pro380Gln
G/T 90804575 missense_variant p.Pro380Thr
C/T 90804641 missense_variant p.Val358Met
A/G 90804667 missense_variant p.Leu349Ser
T/A 90804670 missense_variant p.Glu348Val
C/G 90804672 missense_variant p.Lys347Asn
T/C 90804673 missense_variant p.Lys347Arg
G/A 90804681 synonymous_variant p.Asn344Asn
T/C 90804685 missense_variant p.Glu343Gly
C/G 90804691 missense_variant p.Ser341Thr
A/G 90804711 synonymous_variant p.Phe334Phe
T/A 90804736 missense_variant p.Tyr326Phe
C/G,A 90804755 missense_variant p.Ala320Ser
A/G 90804760 missense_variant p.Val318Ala
C/A 90804780 synonymous_variant p.Arg311Arg
G/T 90804791 missense_variant p.His308Asn
A/T 90804805 missense_variant p.Val303Asp
T/C,* 90804848 missense_variant p.Thr289Ala
T/C 90804885 synonymous_variant p.Gly276Gly
C/A 90804943 missense_variant p.Gly257Val
C/A 90804954 synonymous_variant p.Val253Val
G/A 90804957 synonymous_variant p.Ile252Ile
A/T 90804960 missense_variant p.His251Gln
G/A,T 90804967 missense_variant p.Pro249Leu
G/A,T 90804975 synonymous_variant p.Thr246Thr
T/A 90804977 missense_variant p.Thr246Ser
A/C 90804996 synonymous_variant p.Pro239Pro
T/C 90805035 synonymous_variant p.Leu226Leu
A/G 90805040 synonymous_variant p.Leu225Leu
T/C 90805048 missense_variant p.Lys222Arg
C/G 90805050 missense_variant p.Met221Ile
A/G 90805051 missense_variant p.Met221Thr
T/A 90805053 synonymous_variant p.Thr220Thr
C/T 90805056 synonymous_variant p.Gln219Gln
C/T 90805074 synonymous_variant p.Arg213Arg
C/A 90805111 missense_variant p.Gly201Val
G/C 90805155 missense_variant p.Asn186Lys
T/A 90805297 missense_variant p.Asn139Ile
C/T 90805458 synonymous_variant p.Glu85Glu
A/T 90805464 synonymous_variant p.Arg83Arg
A/G 90805470 synonymous_variant p.Ile81Ile
T/A 90805541 missense_variant p.Thr58Ser
T/A 90805546 missense_variant p.Gln56Leu
G/T 90805676 missense_variant p.Leu13Ile
T/C 90805749 5_prime_UTR_variant
A/T 90805758 5_prime_UTR_variant
C/A 90805802 5_prime_UTR_premature_start_codon_gain_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06111.1
MATVQLCVALLFLLQLSSLQFASLGYNVPDKYFINCGSDNSVTESGKVYVGESTPQATFSSSNTERNQSSVPSPLYQTARIFRRESWYKFNIDNNGTYLVRLHFFPFSSPTNLSSARFNVSVPGFWLLQNFNGRNDTNNNSALVKEFFMEISTPSIKVTFRPLESSFAFVNALELFVLPLHLISDNVRRFTPTWGSSSDRGGLYSRVLETKHRLNVGGQTMKDILLRNWIPDDIYLTYPENAKNRTPYPGHIVPRVGDDSDGPNATSYTAPSEVYGTAKESKNISDNATDLGLFNMTWALPVVNNTDHFLRLHFCDYVSAQVGLTYFELSIYDFHVMQVNSDENVSKELPAPYYYDFVVSSDNSGYIKVSLTPNGTAPVPNTFLNGLEIMKVIESSNFVPPELEDPDSEYNRLPLLLGSVLCGVVLVSIVVLLGFLWRCKMKKEKSAENSDWLPILDNAGGSSHGRLTDITNHCSPIPKINLELKIPLIDLQLATKNFHATKLIGKGGFGNVYKGVLNNGMTVAVKRSQPGSGQGLPEFQTEIMVLSKIRHKHLVSLIGYCDERFEMILVYEYMEKGTLRDHLYNTNKPSLSWKVRLQICIDSARGLHYLHKGAAGGIIHRDVKSTNILLDENHVAKVAGFGLSRSGPADTQPHVTTGVKGTFGYLDPEYLRSQQLTEKSDIYSFGVVLLEVLCARAAIDPSLPTDQINLAEWGLLCKNKGILRDIIDPSIIDQIDQNSLRKFIETIEKCLKENGSDRPGMGDVLWDLKYALQLQTGPYEDSFSSVSASLQLPNVRRLPSLSILSEA*


CDS Sequence:
>Vu_06111.1
ATGGCGACTGTTCAGCTCTGTGTGGCACTTCTTTTCCTTCTTCAGCTCTCATCGCTGCAGTTCGCTTCACTGGGCTACAACGTCCCAGATAAGTACTTCATAAATTGTGGGTCAGACAACAGTGTCACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACCTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTACCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGTAGGGAGTCTTGGTATAAGTTCAACATCGATAATAATGGCACCTACCTGGTACGCCTCCACTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTTTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGTACCCCCAGCATAAAAGTAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCTTAGAACTGTTCGTACTACCCCTCCATCTGATATCCGACAACGTGAGGCGTTTCACTCCTACTTGGGGTTCATCTTCCGACAGGGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAATGTTGGTGGCCAGACAATGAAAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACTTATCCTGAAAACGCCAAGAATCGTACCCCTTACCCGGGTCATATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAGGAGTCTAAGAACATCTCTGACAATGCCACAGACTTGGGACTTTTCAACATGACATGGGCTCTTCCGGTGGTCAACAACACAGATCATTTCCTTCGGCTTCACTTCTGTGACTATGTCAGTGCACAAGTTGGCCTTACATACTTCGAACTTTCCATTTATGACTTTCATGTCATGCAGGTAAATAGTGACGAAAACGTGTCTAAGGAGTTGCCTGCCCCTTATTATTATGATTTCGTGGTGAGCTCTGACAACTCTGGATATATTAAGGTCAGCCTAACACCTAATGGAACCGCTCCCGTACCAAATACCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATTTTGTCCCCCCTGAGTTGGAAGATCCCGACTCCGAGTATAATCGACTTCCTCTGTTACTGGGTTCGGTTCTCTGTGGTGTAGTCTTGGTGTCTATTGTTGTGCTACTTGGCTTTCTTTGGCGTTGTAAAATGAAGAAGGAAAAGTCCGCTGAGAATTCGGACTGGCTGCCAATTCTGGATAATGCTGGAGGGAGTTCTCATGGTAGATTGACTGATATAACCAATCACTGCTCTCCCATTCCCAAAATAAACCTAGAGCTCAAAATTCCATTGATTGATCTTCAACTGGCAACAAAGAACTTCCACGCAACTAAGCTAATTGGCAAGGGTGGTTTTGGAAACGTCTACAAGGGAGTCCTCAACAATGGCATGACGGTGGCGGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCGGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAATAAGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCAACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGGTTTTGGTCTTTCAAGGTCAGGTCCTGCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATCTCAGGTCGCAACAGCTGACAGAAAAATCTGATATCTACTCATTTGGGGTAGTTCTTTTGGAAGTGTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCAGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCGAGATATCATCGATCCTTCCATCATTGACCAAATTGATCAAAACTCACTCAGAAAATTTATTGAGACGATAGAAAAATGCTTGAAAGAAAATGGTTCTGATAGGCCAGGCATGGGTGATGTGTTGTGGGACCTGAAGTATGCTCTGCAGCTTCAGACAGGGCCGTATGAGGATAGTTTTAGTAGTGTTTCTGCATCACTTCAACTTCCCAATGTTCGTCGTCTTCCTTCACTCTCTATACTGAGTGAAGCGTGA


Promoter Sequence:
>Vu_06111::LG1:90805922-90807922(-)
TCCTACCTTTCAAATGTTTCAGTTTTTTTCCTTTTGGGAGTTCAAGAAAAGAAAAATTTTTAAATTGACAATTTTCTCGTGTATTTTGCCATTTATCTTTCATAGATTAAAGACATGCTTTACTGCTTGAGCTGTTATATGTGGAGCAAACAGTCAATTTAGTATATTCTTTCTCAATAAAATCTGTTTTATTCACTGCAATATGAGAACCATTCTATCAGTAGTACAGCACTAATATTAGAGAAGCTATATGTTGCATTTCATTGGGCAGCTCAAGCTCTTGGATTGCCATTTTTGAGTCCATATCTGCAATCAATTGGATCTGATTATACACATGGAGCTAATTATGCTACACTGGCATCTACTGTGCTTCTACCTAATACTTCTTTGTTTGTCACTGGGATCAGTCCCTTCTCTCTTGCCATCCAGCTCAACCAAATGAAGCAGTTCAAAACCAAAGTTAATGAAGTGCATGAACAAGGTACAAAATGCATAAACTTCCTAGTTCTCACTCTGTCTTTTAATTCTAAAGCATTGTAATAGTTTCTTTTGATTGTTCCTCAGGATCCAAGCTTCCTTCACCAGATATATTTGGAAAGTCTCTTTACACATTCTACATTGGCCAAAATGATTTTACTTCCAACTTAGCTTCCATTGGCATAGGTGGAGTACAGCAATACCTCCCTCAAGTTGTTTCACAAATTGCTGCTACCATTAAGGTGAGATTACCATAACAGTCAATAACAACTAAAATCTATAATTAGTGAAAGAAAAGATGTATAATTGAGTTTAGCTCAATGAATTTATAGGAGTTATACAATCTTGGAGGACGTACATTTTTGGTTCTTAATCTTGCACCAGTGGGATGCTACCCTTCATTCTTGGTCCAGCTTCCTCATAACAGTTCAGACATTGATGAGTTTGGATGCTTGGTTTCTTACAATAATGCAGTAAGGGAATACAACAATATGTTGAAACAGTCACTGAGACAAATCAGAGAAAGTCTTTCCAATGCTTCTGTCGTTTATGTGGATACTTCCACTGTTCTGCTGGAGCTCTTCCGGCATCCCAATTCTCATGGTTCAAACACAAATCCCTACACTTGTTTAAGAGTACCGGAATTTCTTCATTATTTTTCTGACTTTTATCTCCTTTGTGAAACAGGGCTTAAGTATGGTACAAAAGCTTGCTGCGGCTATGGAGGTGGTGACTACAACTTCGATCCTAAAGTTTACTGTGGCAATTCCAAAGTGATAAAAGGCAGCAAAGTGACAGCAACTGCATGCAATGACCCCTACAACTACGTGAGCTGGGATGGAATTCATGCCACAGAAGCTGCAAACAAGCTTACTACCTTTGCAATTCTTAACGGATCCTACTCTGATCCTCCTTTCCCATTTCAGGATCATTGTGATCTTCAACCTATACATTAATCCATTTCTTAATTAACAAATGATGAAGTCCTAATTCTGGCTCAGCTGTTTAATAAATTTTTCCAAGAAATCAAATTTCTTATGACGCAAAATTTCCAAAACTGTAAAAAACAGTTTGTATTGGTAGATGCATCGGCTTACAATTCAGTCAACAGTACTAATAAAGAAATTGAAATGAAGACAGGGATGACAACAGTTACGTAATCGATTACCATATGTCGTACTCGATTACATCGCGATGAAGTTGTTAAGGAACATGACTACTTTCACTTTTTACATTGGGAGGGCTTAAGAGAAATTGTTTTGGGGTGGTGCACTATAAAGTTGTGTGAAGTCTGCATTGCTTATTCTCATAAAATAATATATGTTTCGAATTTGCCGAAAAAAAATGTAAGACATCATTAAAAGTGACATTTTAAATGACAAACATGGGCTAAAATATAAATGACAAACATTCATTAAAAGATAGTTGTTCTGTTCTTTTAATATATATATAAAATACTGTCATAAATCACATTATTAAATGTTTTTTTATTGTTGGAGGAAATGTTGTAAGGACTCGTAATA


Gene Sequence:
>Vu_06111(-)
ATTCTGAAATTTGTGGCAACACTTTTCCATTTCCATTTTCATCCGTTGTACATAAATAAACTTTCAGAATACAAATAAAAGAGAAAAAATAAGAAGAAAAATCAAAGCCGCCATTGACCTGTGTTGAAGTCTTCCTCTAGTTGGAGTTCCATGCTATTCATATCTGATACAACATCATAAGCAAAACTAAACATTGATTACCATTTTTGCATGGCGACTGTTCAGCTCTGTGTGGCACTTCTTTTCCTTCTTCAGCTCTCATCGCTGCAGTTCGCTTCACTGGGCTACAACGTCCCAGATAAGTACTTCATAAATTGTGGGTCAGACAACAGTGTCACCGAAAGTGGAAAGGTCTACGTTGGTGAATCAACACCTCAAGCCACTTTTAGCAGCAGTAACACAGAAAGGAACCAGTCATCGGTACCTTCTCCTCTTTACCAAACAGCAAGGATTTTTCGTAGGGAGTCTTGGTATAAGTTCAACATCGATAATAATGGCACCTACCTGGTACGCCTCCACTTCTTCCCTTTCTCTTCTCCCACTAATCTTTCCTCTGCCAGGTTCAACGTTTCAGTTCCTGGCTTTTGGTTGTTGCAAAATTTTAATGGTAGAAATGATACCAATAACAACTCTGCTTTAGTAAAAGAGTTTTTCATGGAAATCAGTACCCCCAGCATAAAAGTAACTTTCAGACCTCTGGAATCATCTTTTGCGTTTGTTAATGCCTTAGAACTGTTCGTACTACCCCTCCATCTGATATCCGACAACGTGAGGCGTTTCACTCCTACTTGGGGTTCATCTTCCGACAGGGGAGGTTTGTACTCTCGGGTGTTGGAGACCAAACACAGGCTTAATGTTGGTGGCCAGACAATGAAAGATATCTTATTAAGAAACTGGATTCCAGATGATATATATCTCACTTATCCTGAAAACGCCAAGAATCGTACCCCTTACCCGGGTCATATCGTGCCCCGTGTAGGTGATGACTCCGATGGTCCAAACGCAACTAGTTATACTGCGCCATCTGAGGTGTACGGAACTGCTAAGGAGTCTAAGAACATCTCTGACAATGCCACAGACTTGGGACTTTTCAACATGACATGGGCTCTTCCGGTGGTCAACAACACAGATCATTTCCTTCGGCTTCACTTCTGTGACTATGTCAGTGCACAAGTTGGCCTTACATACTTCGAACTTTCCATTTATGACTTTCATGTCATGCAGGTAAATAGTGACGAAAACGTGTCTAAGGAGTTGCCTGCCCCTTATTATTATGATTTCGTGGTGAGCTCTGACAACTCTGGATATATTAAGGTCAGCCTAACACCTAATGGAACCGCTCCCGTACCAAATACCTTTTTAAACGGGCTGGAAATAATGAAAGTGATTGAATCATCAAATTTTGTCCCCCCTGAGTTGGAAGATCCCGACTCCGAGTATAATCGACTTCCTCTGTTACTGGGTTCGGTTCTCTGTGGTGTAGTCTTGGTGTCTATTGTTGTGCTACTTGGCTTTCTTTGGCGTTGTAAAATGAAGAAGGAAAAGTCCGCTGAGAATTCGGACTGGCTGCCAATTCTGGATAATGCTGGAGGGAGTTCTCATGGTAGATTGACTGATATAACCAATCACTGCTCTCCCATTCCCAAAATAAACCTAGAGCTCAAAATTCCATTGATTGATCTTCAACTGGCAACAAAGAACTTCCACGCAACTAAGCTAATTGGCAAGGGTGGTTTTGGAAACGTCTACAAGGGAGTCCTCAACAATGGCATGACGGTGGCGGTGAAAAGAAGCCAGCCAGGGTCAGGTCAAGGCCTTCCGGAATTTCAGACAGAGATCATGGTTTTGTCTAAGATTCGCCACAAGCACCTTGTTTCCTTAATTGGGTATTGTGATGAGAGGTTCGAGATGATTCTGGTCTATGAATACATGGAAAAAGGGACACTCAGGGACCATTTGTATAATACAAATAAGCCAAGCTTGTCCTGGAAGGTGAGGCTTCAAATATGCATTGATTCTGCCAGGGGTCTTCATTACCTTCACAAAGGAGCAGCTGGGGGAATCATTCACCGTGATGTTAAGTCAACAAACATATTGCTTGATGAGAACCATGTTGCTAAAGTTGCTGGTTTTGGTCTTTCAAGGTCAGGTCCTGCTGATACTCAACCTCATGTCACCACTGGTGTTAAAGGCACTTTTGGGTATCTTGATCCTGAGTATCTCAGGTCGCAACAGCTGACAGAAAAATCTGATATCTACTCATTTGGGGTAGTTCTTTTGGAAGTGTTGTGTGCAAGAGCAGCGATTGACCCATCTCTTCCAACAGATCAGATAAACTTGGCAGAATGGGGATTGCTTTGCAAAAACAAGGGGATACTCCGAGATATCATCGATCCTTCCATCATTGACCAAATTGATCAAAACTCACTCAGAAAATTTATTGAGACGATAGAAAAATGCTTGAAAGAAAATGGTTCTGATAGGCCAGGCATGGGTGATGTGTTGTGGGACCTGAAGTATGCTCTGCAGCTTCAGACAGGGCCGTATGAGGATAGTTTTAGTAGTGTTTCTGCATCACTTCAACTTCCCAATGTTCGTCGTCTTCCTTCACTCTCTATACTGAGTGAAGCGTGAAGCGGATGATACTCTTGTGAGGGGTGATGAATCCGATATTGCTATGGATTACGCTTTCCCCCAGTTGAAGATCGATGATGACAGTCATCCATTCGCAAATGTCTGGAGTGGGTAGCTGCTTTTTAAGATAGATTTTTCAACCCTTCCTTTTCTTTTCTGTAAGTTGTTTAAATAAAGTTAACAAAGCAATTGTAAACCAACTGATTATTAGTCAATTTCCGTGGCCGTAATAAATTATTGACGAATACTTTCATTTTATACAACACTTGGGTTGAATTTTGC