Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06096 LG1 90545050 90546469 PREDICTED: probable WRKY transcription factor 15
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, calmodulin binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/T 90545567 missense_variant p.His246Gln
A/G 90545595 missense_variant p.Leu237Pro
T/G 90545780 intron_variant
G/A 90545854 synonymous_variant p.Leu206Leu
G/T 90545891 synonymous_variant p.Ser193Ser
G/T 90545902 missense_variant p.Pro190Thr
A/G 90545931 missense_variant p.Leu180Pro
G/A 90545956 missense_variant p.Pro172Ser
G/A 90546050 synonymous_variant p.Phe140Phe
C/T 90546088 missense_variant p.Gly128Ser
T/G 90546092 synonymous_variant p.Thr126Thr
C/G 90546130 missense_variant p.Val114Leu
G/A 90546165 missense_variant p.Pro102Leu
G/C 90546203 synonymous_variant p.Gly89Gly
C/A 90546380 missense_variant p.Leu30Phe
C/T 90546384 missense_variant p.Gly29Asp
G/A 90546423 missense_variant p.Thr16Ile
C/A 90546448 missense_variant p.Gly8Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06096.1
MAVELMTGYRTTTFTTKAEENAVQEAASGLESVEKLIRILSQTPQQYNSSNQIAIDCKAVADLAVSKFKNVISLLGPGPGPTPTPAPTGHARFRRAPLPPPPSPPSTQPSQPPVFHATPLHQIPKTDGTLNDSSSKTIYFSYPSPATSFISSLTADAHTKQPSSSSPPPPAPGSFHITTLSHVSSAGKPPLSSSSSFKRKCSSENLPSGKCGSSSSRCHCSKKSRKMRLKKVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRWYPLPGVSETQPLIRFTRFQRGNYGAVECQLYSSQGTNLEKN*


CDS Sequence:
>Vu_06096.1
ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCAGCCTCCGGTTTGGAGAGCGTGGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTCGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTCGGCCCAGGCCCAGGCCCAACCCCAACCCCAGCCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCGTCTCCTCCTTCCACACAACCCTCCCAGCCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCAAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCTGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACCTGCCTTCTGGAAAGTGCGGTAGCTCCTCCAGCCGCTGTCATTGCTCCAAAAAGAGTAGGAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGACAGAAACCGATCAAAGGATCCCCTCATCCAAGGTGGTACCCGTTACCAGGTGTATCGGAAACGCAACCATTAATCAGGTTTACAAGATTTCAACGGGGTAATTATGGAGCTGTTGAATGCCAACTTTACTCTAGTCAGGGCACTAATCTCGAAAAAAATTAG


Promoter Sequence:
>Vu_06096::LG1:90546469-90548469(-)
TTCTATTTATACCTTTTAATAATGATTTTCAACATTTTTCTATTTTTAAATATAAAACATAGATATTTTAAAAATAAGTACACAAAAAAAAAATAAGATGCTCTTCGTAGAAGTAATTGGAATATATATATTGTCAATTGCAATTTATTTTATAAATTTACTTTGGGTGAGCTAATAACACAAAAGACAATATACATTAAAATAATGATGAAAATATTATTTATAAGTGTTTATTCTACCTTAAGTTATATACAACAAATATTATTTTTATATATTTATTGATGTCTATCAAAGGGATGCTAAATAAAAATACAAGGAGTTGCCTTTTAATAAATGTTTAAATTTAAATTATATAAAGTAGGTTAGGTTTTTAGTAAATATTTTTTTTTGGAATTTTACAATGAACATATTATATGAAATTAATTCCTTAGAATCCTGGTCTCATGAAAATCTGTTTTTAAATCATTCATTTCCCAATACACTGTGGCACTATTAACTATATTTTAAAGAGATTGAATTTAGGTTTTGGAGTTTGAAATCTCTTCATGTATATTCCGTGTAGATAATTTTGTTCTTTAGTGGATTCCACCTTTGTTCTTGCTTTAAATTGTTAGTCAACAGTAAATTTATATTAAGTGAAATTATATACCGGGCTATTAAATAACCTGGTAATAATACCTAATTGTATTAAACGATAATAATACACGTTTTAGCATAGCGAAAAAGAAATTAAACCACTTTTATTCGCTGAGATTTACTTAAATGTATTCAAAGTAAGATTATAAAATAATATTATAAATGTTGTTACTTTTTAAGAGATATATATTAAAACAATTGTCTCCTGTCTCTGAATTATGAATATGGGATAACAGCAGAGTCAACACATATCACAGCCTCTCTCAACTTCATAATTTCTTTCATTTTCCTCATCATACCATTTTGTCCTTATATAAATGAAATAATTGAGCTTTCTCATCATAACACAGACAAATGATTCAATAAAATTATATCTAGTTATAATTATGGTAACAGGGTATGTATATAAGGAAGAAAGAGTAAGTTAAAACAAATGGCATGTGTGTGCATAACTCATCACACTGAATTTACACGCTAGAAAACATGACTACTGGAACCTCCTTTCCCTGTTCACATATCCAAAGATAATATCAAAAAATATATGAAATGAAATTGTAGTCTATAGGTGTGGTGAATCAAAGTCAACAATACCAAATGTAATGCAAATGCAAGTGTAATGCAAATGAAAATGCAGTCAAAACCCACCCAATCAACAACCCCTTCCATTCCCACACATTGCCATTCACCACACGCCTGCTCCTCCAATACAACAATCCTCGCTTCAATAATAATCCCGTGGCCCCCACTCCCCAATAAAAGGTCAACGTCCTCCACTAACTTAACAAAATTTTCAAAATTAAGGCTAATTCAGGTTTTTAATTTAAACGAGTCAGGCCTGGAGGAACTAAAATATTTTTATATTTCTCTTGTTCATATTTCTAAGAAGCAACTCAAAGATTGTTTAAGAGCGCAAGACCTCTTACCTAAGCTTTGGAAACCTATATCGACAAAAGAAAATTAGTATTAAAACTGATTTAGAAAATTAAGTTATTATAAATGATTATTAAGGATGGTAATTGAATTTGAACAGTTTTTTTAGGATATTTAAAAAATAATAGTAATAGTAATAGTAATTTAATAAGAAAAATGAGAAGAAGGCGTTTTGTCCGTTTGGATAGAGCGTTTGATTGTTATTGGTAATTGGCATGGGATGGCACCAACGTTTGACGGAAACAGGGTAACGTGACAGTCCAGTCACCTAGTGGACCAAAGCAGCCGAATCTATAGCACCCATTTTGACCATAACAATAACCTTAACCATTCCCCACCCTCCTCCTCCTCCTCCTCCTATTATTTTCTTTCACTTTGTCAACCACTACCTTCTCTCTTAATTCCTCTTCTCCCATGGTTTAGTGGCCTCAACT


Gene Sequence:
>Vu_06096(-)
ATGGCCGTGGAGCTCATGACAGGCTACAGAACCACCACTTTCACCACCAAAGCAGAGGAAAATGCCGTCCAGGAAGCAGCCTCCGGTTTGGAGAGCGTGGAGAAGCTCATCAGAATCCTCTCTCAGACTCCCCAACAATACAACTCCTCCAATCAAATAGCTATCGACTGCAAGGCCGTCGCCGACCTCGCAGTTTCCAAGTTCAAAAACGTCATTTCGCTCCTCGGCCCAGGCCCAGGCCCAACCCCAACCCCAGCCCCAACCGGCCACGCCCGCTTCCGAAGAGCTCCTCTTCCTCCTCCTCCGTCTCCTCCTTCCACACAACCCTCCCAGCCTCCCGTCTTCCACGCCACCCCTCTGCACCAAATCCCCAAAACAGACGGCACCCTCAACGACTCCTCTTCAAAAACCATTTATTTCTCCTACCCCTCCCCCGCCACTTCCTTCATCTCCTCCCTCACCGCCGACGCCCACACAAAACAACCCTCTTCCTCCTCGCCGCCCCCGCCTGCGCCGGGTTCTTTCCACATCACCACTCTCTCCCACGTCTCATCCGCTGGGAAGCCTCCCCTCTCCTCCTCCTCCTCTTTCAAGAGGAAGTGCAGCTCTGAGAACCTGCCTTCTGGAAAGTGCGGTAGCTCCTCCAGCCGCTGTCATTGCTCCAAAAAGAGGTATCTCAACAACCATGCATCTTTCTTCCAAATTACTGTTTTTTTTTTCGTGACTCAATCTGAACTTGCTCCGATTTTTTATTTATTTATTTCTTTTGTTTTAGAACTAAATGCAATTTAGTTTAGACGGTTTGTTCTGACGATTAAGGTTTGGTGTGGCGCAGTAGGAAAATGAGGTTGAAGAAGGTGGTGAGGGTACCGGCTATAAGCTTGAAGATGGCCGATATTCCACCGGATGATTATTCTTGGAGGAAGTATGGACAGAAACCGATCAAAGGATCCCCTCATCCAAGGTACTGGGTGTATTATGTTTTTGGTAATTTGCAGACACGAAAGTTGACTACTGAATTTCAAAACTTAAAGTAGACTGAATTTATTATTTGTTTCCTTTTATGCTGGTTGAGGACCTAGTTTGAATCTTTGAGGAGTGAGGCATGCTGATAATTTTTAATTACAGGGGTTACTACAAGTGCAGTAGCGTGAGAGGTTGTCCGGCGCGAAAGCATGTGGAGCGAGCTTTGGATGATCCGGCTATGCTGGTGGTAACCTACGAGGGGGAGCACAGTCACACTCTCTCCGCGGCCGATGCCACTAACCTTATTCTTGAATCATCTTGAAGGTGGTACCCGTTACCAGGTGTATCGGAAACGCAACCATTAATCAGGTTTACAAGATTTCAACGGGGTAATTATGGAGCTGTTGAATGCCAACTTTACTCTAGTCAGGGCACTAATCTCGAAAAAAATTAG