Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_06087 LG1 90371939 90375717 PREDICTED: floral homeotic protein APETALA 2-like isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   seed development, specification of floral organ identity, seed development, plant ovule development, specification of floral organ identity, flower development, specification of floral organ identity, specification of floral organ identity, regulation of transcription, DNA-templated, specification of floral organ identity, regulation of transcription, DNA-templated, seed development, specification of floral organ identity, specification of floral organ identity, regulation of transcription, DNA-templated, seed development, specification of floral organ identity, cell differentiation, regulation of transcription, DNA-templated, meristem maintenance, specification of floral organ identity, seed development, specification of floral organ identity, regulation of transcription, DNA-templated, specification of floral organ identity, plant ovule development, seed development, specification of floral organ identity, seed development, plant ovule development, regulation of transcription, DNA-templated, sexual reproduction, regulation of transcription, DNA-templated, specification of floral organ identity, seed development, specification of floral organ identity, specification of floral organ identity, plant ovule development, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 90371989 3_prime_UTR_variant
A/T 90371994 3_prime_UTR_variant
G/A 90372246 3_prime_UTR_variant
T/A 90372463 stop_gained p.Arg502*
A/T,* 90372614 intron_variant
A/T,* 90372616 intron_variant
A/T 90372618 intron_variant
A/T 90372620 intron_variant
A/T 90372622 intron_variant
A/T 90372624 intron_variant
A/T 90372626 intron_variant
A/T 90372628 intron_variant
A/T 90372630 intron_variant
A/T 90372737 intron_variant
C/A 90373069 missense_variant p.Gly377Trp
T/A 90373111 missense_variant p.Asn363Tyr
G/T 90373273 intron_variant
A/G 90373478 intron_variant
G/T 90373695 intron_variant
T/G 90373707 intron_variant
T/G 90373796 missense_variant p.Lys255Thr
C/A 90373810 synonymous_variant p.Pro250Pro
T/G 90373821 missense_variant p.Thr247Pro
T/C 90374137 intron_variant
C/T 90374153 intron_variant
A/C 90374358 intron_variant
G/A 90374618 intron_variant
T/A 90374723 missense_variant p.Ser161Cys
G/A 90375099 synonymous_variant p.Gly35Gly
A/G 90375188 missense_variant p.Tyr6His
A/T 90375435 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_06087.2
MWDLNYSPDQRKDEESEGCSSLKTSIYGDDDNIKGKRVGSVSNSSSSAVVIEDGSEEEEDDDEEDEEGGRRSMKKRSSKIFGFSVTEDCESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFCQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSGAESTGNGADHNLDLSLGNSSSKGGGNQAFGNHHHGSNGGNHDQQVAAESNWRNGGSKPKLVNILPKPCNRGNKDTQGRDVHGESEALRMLSQTHLHCPASSEMQRYGPYRSTGGESQMLQNFAPIHPPNFHFPSSSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS*

>Vu_06087.1
MWDLNYSPDQRKDEESEGCSSLKTSIYGDDDNIKGKRVGSVSNSSSSAVVIEDGSEEEEDDDEEDEEGGRRSMKKRSSKIFGFSVTEDCESMDSDHPPVTRQFFPVEEADVAVASGGGSSTFPRAHWVGVKFCQSEALGAGKSVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVEADINFNIEDYEDDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAAKAYDKAAIKCNGKEAVTNFDPSIYENELNSESTGNGADHNLDLSLGNSSSKGGGNQAFGNHHHGSNGGNHDQQVAAESNWRNGGSKPKLVNILPKPCNRGNKDTQGRDVHGESEALRMLSQTHLHCPASSEMQRYGPYRSTGGESQMLQNFAPIHPPNFHFPSSSSSIGGRIGSDLSLSMADQQQWQSGPPHYLATAAASSGFPQQIRPSSQGWLQKNGFHTLMRPS*


CDS Sequence:
>Vu_06087.2
ATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGACGACGACGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTAGAGCTCACTGGGTAGGTGTAAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTCGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATAAAATGCAATGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAACGAGCTTAACTCCGGAGCAGAATCCACAGGGAACGGTGCAGATCACAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGGTGGCGGTAACCAAGCGTTTGGGAATCATCATCACGGCAGCAATGGTGGAAATCATGATCAACAGGTGGCAGCTGAATCTAATTGGCGAAATGGGGGAAGCAAACCTAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTGCCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTACCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCCCATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA

>Vu_06087.1
ATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGACGACGACGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTAGAGCTCACTGGGTAGGTGTAAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTCGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGGATTGTGGAAAACAAGTGTATCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGGCTTATGACAAAGCAGCCATAAAATGCAATGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAACGAGCTTAACTCCGAATCCACAGGGAACGGTGCAGATCACAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGGTGGCGGTAACCAAGCGTTTGGGAATCATCATCACGGCAGCAATGGTGGAAATCATGATCAACAGGTGGCAGCTGAATCTAATTGGCGAAATGGGGGAAGCAAACCTAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTGCCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTACCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCCCATTCACCCACCAAATTTTCATTTTCCCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGA


Promoter Sequence:
>Vu_06087::LG1:90375717-90377717(-)
CAAAATTTCCTCTAGTTATAGGTAATATCAAAATTATATTAAAAGAATCAGTTTTACTGCAAGTATTTTTTTTTTTTTACAAAACAATCTAAGTTAGACTTAATTATTACAACATGTAAACAATGTTTCATCTCTTGAAAAATTAATTTGAGGGGAAGAAACATCAGAGAAATTTTCACTATTTAATCATAGTCAAACACCACTTCAAATTTAAAACTTTAAAACATTAAACTTGTGATCTAATTTCTTAGTCATGTTTTACTCAACTTCATCACTTATACTTTATTAAGTCTCAATCTTACTTGAAAGACAATATCATCACTGAGACATTTGTGATTAAAAATGCTTTTCGGACTATCAATATGTAAAAAGAAAAACTCACAATTGTTAATATTTAAGTTCATATGGAGTCTCACATTATTTAAAAACAATCAAAGTTAAACGGCATTAATAAATAACTCAATAAGCCTATTAATTAGTTTAAAATTTTGAATTGGATATAATGTCAAATTCTCATGTTCTTGGGTGGTGGCAAATCAATGAAGATTTTCCCTTAAGAATAATATCATTTTGATGTTCGAGAGCTTTTACAGCTGTTTTTAGTTTTTGTACAATCTTCGTTTGGTTATAGGTTTGATTGAAGTCCAAAAGGAAAACAAAACATGATTTTAGAAATATGTGTTTCAACCTTCAAATTTCTTTACAAGGGAACATGATCTATATAAGTTAACCTTTATATGTACAATATTACAAGGAAAACTAAATCATACACTTATTTCCTTTTTCAGACTAGCTTGGCTCAATTTTTTTGCTTGCATCACTTATTTAATATTAGATAAAATTATACCGGAATCTTTTGAATAGAAAATATTAAAATCTATTACGACAGTGATATTACGAAACTTGTATAAAATGAGTTGTATCTATTAAAACCTATAATAATATTATGACTGTTACAGTAGCATTCCATTACGAAACTAAGAATGTTACATAAAGTGCAGGAATGTTTAAAAGGTTTTTACATGTTGGAATGAAGTGTGAGATATTTTTGAGCATATTACACTGAAAAAAATGTTGTTGAGGTTGAAGGGGAGAGTGATATTTGTGTTGATGGGTGGTTAGTTGTGAGAAGTGATTTTATAAAGAGGGAGGAGATTAGAGAAATGAAAAGGAAAGGTAAAAAAATGAGAAAGAGCAGTAGTAGTAGTAGTAGTAGAGAAAGAAGAGTATTGTTGGAAGAGAAACAAAGATTACATAGAGGTAACACGCGCAGTTTGAGGAGAGTGAGGTAGTGTAAGATAGGGTCATAAATACAAGGTACAGCGTAGGAAGGGCATTGGTCGCTTGGAGAACGAAAGAGGCAAAGGTGGCCCTCTTCCCGTACTCTTGGATTGGACTTTTCTGGAAAGAGTTTCCTTTTACTACTATTATTCTCATTTCCTTTTCTGATGCCAAAACCTATCACAAACTCAAACACCCTTCCCTTCCTTCCTTCACTCTTTCTCCTCTTTTCCCTTCCCTTCCACACTCTCAATTAAATACTTCTTTCTTCCCCAAACTACCCCTTTCCATCACCTCTAATTACTTTCCTTTTTTGTCCTCCCGTCGCACCCCACATGGTAAAACGTAGTCATAATCCTAAAAAGATAAAAACGCTTGGAGGCGTGGATTGAACAAGGGGCTTTGCGACTTGCGAAATCATTAGCGATTACAAGCTAACAAAAGCTATTTTTTAGTAATTATCTTTCTTTAGGACTCCTTCCGCTGTCTATTTCCATTACTGGGTAATTAGGAGCCAGAAAGACACCCAGGATGCTTTTCGATTTGGTTAACGTGGGAAAGTTGTTTAAGAAAGAGATGGTTCTTTCTTTCCCAATTTTCTCAACACCTATTTATCTCTCTGACCCCTCTCTAATAAATAGAGAAAAACAGTAAAAATTAAAAAGAGTGAGAGAGGAAATAATAATAAAGAAAACAGAAATAGAAATATTTGTTTTTTC


Gene Sequence:
>Vu_06087(-)
GAGAGTGACGAATGACAAGAAAAAGGACAGTCTAGAGATGGAGAGAGAATGAAATTATGAGTCATTGAAAAGAAAAGAGAGAAGCAAGTGGTTAGAGAGAGAGAAGAAAGGAAGGGTGTTAAGGAGAGGGTGAGATGCTTTCGTCTAAGCTTGCTCAAACTGGCCTCGTCTATGCTGTATTGGGCAGTTGGGGAATACAAAGATCTTTGAACATCTCCTTTACTACATTTTTGCAACACCTACCTCTTTCTCTCTCTCTCTTCACTCGTCCTAGGTTTGATTTTCTTCTCTGAATTCCCAACCTCGCTACCTCCACCACTTCTCCCTTTTTCGCATCTCCATTATTTTATTCTCAAACCGCGACAACACACCCATAACACACACGCAGTTTCAATTTCTTCTGCTCCTGCCAGCCCAAATTAAAATTAAAATAAAAGGGCAACACAAAGGTTTGTTCTTTTCATGTGAGACTGAAGAGCACACACCCGGCTCGCTACTTACCGTTAATGTTAGAATGTGGGATCTCAATTACTCACCCGATCAGAGGAAGGACGAGGAATCCGAAGGGTGTTCTTCCCTCAAGACTTCCATCTACGGGGACGATGACAACATCAAAGGCAAAAGGGTTGGATCTGTTTCCAATTCCAGCTCTTCGGCTGTGGTAATCGAGGACGGATCAGAAGAAGAGGAGGACGACGACGAGGAGGACGAAGAAGGTGGCAGAAGAAGCATGAAGAAGCGAAGCAGCAAGATTTTCGGGTTCTCTGTGACCGAAGATTGTGAGTCCATGGACAGTGACCACCCACCTGTGACAAGACAGTTTTTTCCGGTGGAGGAGGCTGACGTGGCGGTTGCATCGGGTGGTGGAAGCTCCACCTTCCCTAGAGCTCACTGGGTAGGTGTAAAATTTTGCCAATCAGAAGCACTTGGTGCTGGAAAATCAGTCGAAGTCTCTCAGCCTATGAAGAAGAGTCGCCGAGGACCAAGGTCAAGAAGCTCTCAGTATAGAGGAGTCACCTTTTACAGAAGAACGGGTCGGTGGGAGTCTCATATATGGTTAGTGCTTTCCATTTCAAAAAAAAAATGTGTACCTGAAGTTCAAAAAAAATTGGCCTTTTCTCAGCATCAAAATTTGATTCTTTTCGGTTCTGTTTGTGTCCGTGGTATTGCAGGGATTGTGGAAAACAAGTGTATCTAGGTAAGCATAACGATAACAATGATTGTGTGTGTGTGTGTGGAGTGTGGCAGTTATTTTCCCTAAATCTTGTTTTAAGCGGCTAAAACGTTTTTTTTTTCTTCTTTTGTGTTTTTTGTCTCGGCTATGATATGGTAGAGACAAGAGTGAGTGTGTTGTGTGTGTGGGGGGGAAATTTTATTGTGGTGACTGACTTGATGGTTTTGTCTGGGTAAATTTGTCTAGGTGGATTTGACACAGCACATGCGGCTGCTCGGTGAGCCCTTGCCCCCTCCTCTAGTTTACCAAGCTTGTAATATAACTTTTTCTATGTCTTGAACCGAATCAAATATAAATCACATTTCGTTGTGGAAAATGTGAGCCTCAAAGGAAAACCTCTATTTCCATCTCTCTTTGCAGGGCCTATGATCGTGCGGCCATCAAGTTCCGAGGAGTGGAGGCCGACATAAACTTCAATATTGAAGATTATGAAGACGACCTGAAGCAGGTGATCCGTTTGAAAATTTTATTTTATTCCGTAAAGAAGGGATTCGTCCATATATCTTATCTTCAACAGTCTTTCTCATAGAATACACCTTATCTCCTGCGGTTACTGTTATTTCTCCCATCTCGAATTATTCTCGTGATTTGGTCGTATTCGATGTTAATAGATGAGCAATCTTACCAAGGAAGAGTTCGTCCACGTGCTTCGCCGACAAAGCACTGGATTTCCGAGGGGAAGCTCCAAATATAGAGGTGTAACTTTGCACAAGTGTGGAAGATGGGAAGCTCGAATGGGTCAATTTTTAGGGAAAAAGTATGCCTTCTTTTCTTTTATTTTTCTTTTTCTTTTTCTCCATTTTCTCATTCTTCATGCTAAACAATCTAAATTTCATATCTTCCTCATCACTAAGATTAACTCATTTGATTCATTAGGTACGTTTATTTGGGTCTCTTTGACACCGAGATTGAAGCTGCAAAGTAAACTACTATCTTGTTTTGCTCACTCACGTCGTTATTAATTGTTTTCCTTTCCTCCTTCCATTTACTAGATTGCCCATCTTCTAGCGAAGAATATTAAACTATTAATCATCATCATTAGGGTTTTAATTTAATCGCACATTGTTACTATAGGGCTTATGACAAAGCAGCCATAAAATGCAATGGCAAAGAGGCCGTAACCAATTTTGATCCCAGCATCTATGAGAACGAGCTTAACTCCGGTAAGAAATGGAATAAAAGTATTTTTTAGCATGATTTTTGCGATAATCGTGTTTATGTTATATTAATGAAACGTATGTGTGAATATGAAGGAGCAGAATCCACAGGGAACGGTGCAGATCACAATCTGGATTTAAGTTTGGGAAATTCAAGTTCAAAGGGTGGCGGTAACCAAGCGTTTGGGAATCATCATCACGGCAGCAATGGTGGAAATCATGATCAACAGGTGGCAGCTGAATCTAATTGGCGAAATGGGGGAAGCAAACCTAAGGTTGGTTGATGGTTGTTATTATTATATTAAGTTATGGTGGAATGGTTATTGATTTGTGTGTTAATATTTGGTTAAGCTGGTGAATATACTGCCAAAACCATGTAATAGAGGGAACAAGGACACACAGGGAAGGGATGTGCACGGGGAGAGTGAAGCATTGAGGATGCTAAGTCAAACCCACCTTCATTGCCCAGCTTCCAGTGAAATGCAAAGATATGGTCCCTACAGGTCTACCGGAGGAGAGTCTCAAATGCTTCAAAATTTTGCTCCCATTCACCCACCAAATTTTCATGTGGGTATCTCTTCAATTAATTTATTTTAGCTCATACATTAAATAGAGATCAGAAAATATAGAAACACGAGCCCCCACTATTATTACCATTGAGACACATTTTTAGTATTGGAGTTGTCAGCCCATTTATTTATTTATTTATTTATTAAATGTAGTTTCCCAGCAGCAGCAGCAGCATTGGAGGCCGTATTGGAAGTGATCTTTCATTGTCAATGGCCGATCAACAACAGTGGCAATCCGGGCCTCCACATTATTTAGCAACTGCTGCAGCATCATCAGGATTCCCACAACAGATAAGACCCTCTTCTCAAGGTTGGCTGCAGAAAAATGGGTTCCACACTCTCATGAGACCCTCATGACCCTATATAGAAATTTTCTGCCCACCCAGTTTCATTCAAATGATCATAATCTGCTCCCCGAGAATATCATCACCCCCACCGCCGCCCCCCAAAAAAAATTATTTTCTTTTCTTAGCATGTAAAAATGGTTGCGGTGTTAGGCCGTGTCCATGTCCAACCCAGCAACCTCCTTTAGGAAGGCCATACAAGACCATAACTTGTTAACTGTTGAGGTGAAAAGAAAGGATGAAAGAAAAAAAAAATCCAAATTGGGTACTTATTACTGGTCTTGGTCTGGGTCAGTCAAACTAACAAACGGACGAAATCTTTAACTAGATATTCTGGGCTCTGACTAAAATTTTATGATCTTGTATAACTCTGATTTATTGCTTTTCTGCGTTGTGGTATTTATGACAGCACCTATTCGTTTCTTAATTTGGGATGTATTGCTATCACCTACACATGGTTGTCAATTTGTTCCTT