Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05983	LG1	88878078	88879106	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, root radial pattern formation, root development, root development, phloem or xylem histogenesis, regulation of transcription, DNA-templated, root radial pattern formation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity

No SNPs found.

Sequence Details:

Protein Sequence:
>Vu_05983.1

MIQELLGGASLIAPERKPSINGGGAGGGGGGVLLPTAPSPSSLPSSSTNNVTLTSTTTTTTPTTTTTTPTSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKNIGVANSVAKTASTKMKAVASELGKSPGFGGFEVEHELPPPSQILWGSPQNTHLLALLRATQNQNPNPNPSPMSIKEEGTLIGHMVSTEPLVSNALLNHRILGYDAVAQVPSLGLFGRSNQDQQQNGGFLLGEHHNSGIQEIYQKLRSSSANNYCGDNSSQVFMGNMASNYSSSVSNNIMETTSVAGGEFGYWNGPTFSWSDLPTTNGAGAYP*

CDS Sequence:
>Vu_05983.1

ATGATCCAAGAACTGTTGGGTGGAGCTAGCCTCATAGCACCAGAAAGAAAACCCTCCATTAATGGAGGGGGTGCAGGAGGAGGAGGTGGAGGAGTTCTACTCCCAACTGCACCATCTCCCTCTTCTCTTCCTTCTTCCTCAACTAATAATGTTACCCTCACATCCACCACCACAACAACTACTCCTACCACCACCACCACTACTCCCACATCGGAAAATCAAAACCTCAGGTGCCCGCGATGCGATTCATCCAACACCAAGTTCTGCTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTTTGCAAGACGTGCCGCCGCTACTGGACCAAAGGTGGCGCTCTCCGCAACGTTCCCATCGGCGGAGGCTGCCGGAAAAACAAAAATATCGGCGTGGCGAACTCAGTGGCAAAGACAGCCTCAACCAAGATGAAAGCCGTTGCATCTGAGCTTGGAAAATCACCAGGTTTCGGTGGGTTTGAAGTTGAACACGAGCTTCCACCACCGAGCCAAATCCTTTGGGGTTCCCCCCAAAACACTCACCTTCTGGCTCTACTGAGAGCTACTCAGAATCAAAACCCTAACCCTAACCCTAGTCCCATGTCCATCAAGGAAGAAGGGACCCTGATTGGGCACATGGTGAGCACTGAGCCCTTGGTTTCAAATGCGTTGCTGAATCACCGAATCTTAGGCTATGATGCGGTTGCGCAAGTTCCTTCGCTTGGTCTGTTTGGGAGAAGCAATCAAGATCAGCAACAAAATGGGGGGTTCCTACTTGGGGAACATCACAACAGTGGAATTCAAGAGATTTACCAGAAGCTAAGGTCATCATCGGCTAATAATTATTGCGGTGATAACTCGTCACAAGTGTTTATGGGGAACATGGCTTCTAATTATTCCTCTTCTGTGTCCAACAACATTATGGAAACAACATCGGTAGCTGGGGGTGAATTCGGATACTGGAACGGTCCAACCTTTTCGTGGTCTGATCTTCCAACAACGAATGGCGCCGGTGCATATCCGTAA

Promoter Sequence:
>Vu_05983::LG1:88876078-88878078(+)

CAAGCAATAGTATAACGTATAAAATTAAAATAAAGAATGCAATATCTGCAACGCTTCACATTCTCTGAATCGCGCACTGTTGTTGGTCTTGTTAGGTAGAGTGGACCAGAGAAAGTAGAATGGTGATAACAAACATAAACAGAATCGTTTGCAAGACGCAGCTGCCAATGAACGTACACGCTTTCATATTCCAATGTTAGAATTTCATGCAATTTCCATATGCTTTTCTCGTTCTTTTTATGAAATAAAAAAAAAGGGGTATCTGAAGATCGCGAGTTCTGAGGGTGAGTTGAGTTCTCTGAGGGTATATTCATAATGGAGATAGAGGTCTTGCAATAAGCCATAGAGAAAAGATTCATGTGATGAAAGAATGGATGAATTGATTGCATCCTTATTTTGTTTGTTGTTGAGCATATAACTGTGAAGTAGTATAGTATAGGGTATAGGAATGAAGTTTAAATATTTGGGTGTGTGATGAGTAGCAGAGAGAGGACAATGGGACATGTGTTTGTTCTGGCCAGGGGGAGTGAGTGTGGGGAAGGGCTGAATTGAAGCCATGAGTTTCGGGCGCGCAGTGGCTCTTTCTTTTAGTTACTATACTTGTAGGGACAATCAGCTTTACACGTACTTCCACGTGACTAGCCCTCACCTTGAACTTGTAATCATCGTTTTTGAACGCAGAAGAATCTTCATCCACATAAAACCCTCAATCCCTTCCTCCATAAGCGCCAACAAGTACCACTCTTTTGCAATACTTCATCACTACCCTAATTTTTCTCTCTATCTTTCCTTTTCATCCCATCACAACACTTCAATCTACGCAACTACAACAAATATTTACACATTTAATGCATTTACGGAATATCATTGTTTCCAAAGTGGGGGAACAAAAAATATATCCTTCATCCTCTACTTTTTCACTTCTGCTATTATATTATTATCGATACACGAGCCCGTTTATTCATTTAAGAAAAACATCTGCTAACTACCCACAAATTAAGAACGAACGAAAGTTTTTATTATTTTTTTGAACACAATAGGTCATGAGTTTGGAACTAGAGACTTTCGTAGTTGTTAACTTTATACGTGGAAGCAAAACACATCAGCAGCGAAACGCCCAGTCCATAAAAGAGAAGCACGTTTTAGCCATTTGCGTGTAATAGGAAAATGAAGTCGAATTCAAATCCGTTGTCTGCAAGTTTCTGTTGATATGCGAGCAAAAAGAAAAGGAATTCAAACTGTTTGGATGCATAGAAATTAACGAAGTGTCTTTACTGGTACTGTTTACTCATAAGTGGGACAAACAAAATGATTTCATCCCTTACATAATTCATAATTGATTCAGCAAAGACCGCACGTATGATAGAACGAGTAATGATCAGTGCATTAATAAACCTCTCCTAACTGAAGTTGGAATCATATAAGATCGAAAGTAATAATTAGCTTAAGAAAAAAACTATTGTTTATTATATATTATCACTTGTAGTCAAAATTTTCTAACACCCAAAATGGAAAGTGGAAACTGAACGTTATCTTTCTCTGGTAGAAATTGATTTTGTGAAGTCTACGGAGAAGATGTTTTGCATAATAAAGTTGATAAGGTATTTTTTTCTTGAGATTTAAAACTGATGGGTATGATTTTATTTAAGGAAAGGTAAATTTGTTGTGAGTGTAAAGAGTTGGCATAGAGTGTATAAATATGTATATATTATTGGGAGCCCCCAATTCTATATATTCTTTGGCAACAAGAGTACCTGACTGCCAACGAAGCTGTCCTACTAGCAGCATAAAACAACGAAGCTGGCCAATTGAATTCCCAAAGGCGAGTGTCATCATACACTTCTACTCCTCTCCAATCTATATACTCTTTAATTCTCTCTCACTCATACGCAGAGCAAACCCACTTTCTTTCGCTTTTCTTTCTCCACTAACTCAAAAAGCCTCGCCACCCTTTTGCTTTTCGTTTTTGGATTGTTGTAGATCCACCAAGATAAAGAAGA

Gene Sequence:

>Vu_05983(+)