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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05964 LG1 88565906 88569649 PREDICTED: wall-associated receptor kinase-like 14
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Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of signal transduction, response to abscisic acid, protein phosphorylation, regulation of signal transduction, cellular response to hormone stimulus, defense response to bacterium, cellular response to hormone stimulus, response to salt stress, organonitrogen compound catabolic process, alpha-amino acid metabolic process, protein phosphorylation, immune system process, regulation of defense response, response to salt stress, defense response to bacterium, cellular catabolic process, organonitrogen compound catabolic process, cellular response to hormone stimulus, response to organonitrogen compound, protein phosphorylation, phyllome development, alpha-amino acid metabolic process, cellular catabolic process, phosphorylation, cellular response to oxygen-containing compound, defense response to bacterium, phosphorylation, cellular catabolic process, cellular response to oxygen-containing compound, response to wounding, phyllome development, regulation of signal transduction, response to abscisic acid, cell surface receptor signaling pathway, response to salicylic acid
Cellular Component   is active in   plasma membrane
Molecular Function   enables   kinase activity
SNP Position Effect Amino acid change
C/G 88566069 missense_variant p.Trp643Cys
A/G 88567606 synonymous_variant p.Ala259Ala

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05964.1
MFHRSTKFALLLTIFVFCSTIARTSSNCQPSCGQHSLKYPFGFCSDSKVKLNCSSDSTKVKIGEFEVQNITSDSIFVSLPVKCNRSLRIIDPLFGVNFAPTFNNSFLLQGCKSKQNGCDTTPSSFVGEHGPVEGCDWENKSENFICFKRLPRNNSSREDVLQSDLKGIGCSFLFSAIAYDKSKGKELSLQLQMLELGWWLKGPCNCSNNASCTVVKLATGDPGYRCRCHEGFVGDGFKDGDGCRSTFSAVPQCKPSTLWLCRCRKAIKIGVLVGGVIIVATLVVALSLLCYFTRRRSSWLRKQVTVKRLLREAAGDSIVPLYPYKEIERATSFFDEKHRLGTGAFGTVYAGHLHNDECVAIKKIKYRDTNSVDQVINEIKLLSSVSHPNLVRLLGCCIEGGEQILVYEYMPNGTLSEHLQRERGGILPWTTRLTIATETANAIAYLHSAINPPIYHRDIKSSNILLDYSFQSKVADFGLSRLGMSETSHISTAPQGTPGYVDPQYHQNFHLSDKSDVYSFGVVLVEIISAMKVVDFSRPTSEINLAALAVERIRRGCLDDIIDPFLEPHRDAWTLYSVHKVAELAFRCLAFHSDMRPTMIEVAEELEVIRRSEWEALEETICTASSVGSVCSSPRIGRENSLVGVSFERVAGQGSETLIVPPKSEMFLQSVKEVKDNSPVSVHDAWLSGTSSPSTNC*


CDS Sequence:
>Vu_05964.1
ATGTTCCACCGCAGCACAAAGTTCGCACTGCTTCTCACCATCTTCGTTTTCTGTTCAACCATCGCCCGAACCAGCAGCAACTGCCAGCCCAGTTGCGGACAACATTCCCTAAAATACCCTTTTGGGTTCTGTTCTGACAGCAAAGTCAAACTAAACTGCAGCAGCGACAGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATATTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCTTGCGAATCATAGACCCTCTTTTCGGCGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAACAGAATGGCTGCGATACTACCCCATCGAGTTTCGTTGGCGAGCACGGCCCAGTGGAGGGGTGTGATTGGGAAAACAAAAGTGAAAATTTTATTTGCTTCAAGCGGTTGCCGCGTAATAATAGTTCGCGTGAAGATGTGCTCCAGAGTGATTTGAAAGGAATTGGGTGTAGCTTCTTGTTTTCTGCCATTGCTTATGATAAGAGTAAAGGAAAAGAGCTTTCGCTACAATTACAGATGCTTGAGTTGGGGTGGTGGCTCAAAGGGCCCTGTAATTGCTCCAATAATGCATCCTGCACGGTGGTCAAGCTTGCCACAGGAGATCCAGGCTACCGGTGCCGGTGCCATGAAGGTTTCGTAGGCGACGGTTTCAAAGACGGCGATGGCTGCCGGAGTACCTTTTCAGCAGTTCCTCAATGCAAACCTTCAACACTATGGCTTTGCAGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGGGTGATAATTGTGGCTACCCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCGGGCGACTCTATTGTTCCTCTATATCCGTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCATTTGGCACAGTTTATGCTGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTACGCCTCCTAGGTTGCTGCATAGAAGGAGGAGAACAGATACTTGTGTATGAGTATATGCCCAATGGAACACTATCTGAACATTTGCAAAGGGAGAGGGGCGGAATACTTCCATGGACAACAAGACTCACCATTGCTACAGAAACTGCTAATGCTATAGCATATCTCCATTCTGCCATTAACCCTCCGATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGAATGTCAGAAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAAGTGCAATGAAAGTGGTTGATTTTTCGCGACCTACAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTCGATGATATCATTGATCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAAGTTATCAGACGCAGTGAGTGGGAAGCTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTTTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGAGTGAAATGTTTTTGCAATCAGTGAAGGAAGTGAAGGACAACTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCAACAAATTGCTAG


Promoter Sequence:
>Vu_05964::LG1:88569649-88571649(-)
ATTAGTCTTGGCAAGTCAACACTCTGGTCAATGGTTTATTCGTTTGACATATATATATATAAATAAACATCTAAAGATGTTGATTTATTAGTTATTGTTATTCATATATTAATTTTAAATTATTTCTTTAAATTTCCATAATATGAATTTATATTATTTCTATTTTTCTAAATATTTTTCATTCCTTTAAAATATTGATGAACAACAATATATACAACATAAATATTTTATCACTTGGAATTAAATATTGAAATTCTTTGATTGTGGTAATACATATATTATGTGCATATATTAAAATAAAGTTTCATTACTTAAAGAAATTTTATATTTCAAAAATTAAAGGTTTTAAATATCTTAATATAAATTAATACAACGTACGATTAATTATGTGAAAGATGTAAGGAAGTATGCACGAAATCGATTTTCAGATGCTATATAACGTTAATCTGACGTATGATGATGGATTATCTTCTGATGAAAAATCAATTATTTGGAAATTGATAACTTGTGTGAACAATTGGTTCTTTCATATTTCCATACTTTTATTACAAAATTAATACCAGATATATGATATTGACTTATTAATATATTTATGATTGATTTTTTTTTCTGTATATATATAATTATTAATATTATTATTAGTATCTGACATTCAAAACAATAATTTGTGATTGAGGTAAAATGGATTATTCTCAATTCACATAATGATCTTACGTGGCTAAGAATGTTTTTATGGCTGAATAAACAACTATTCTACTTAATAAAGTATATATGAGCTTGTTTATTAAGGTAATTTTTTCCGTAGTAAAAATAGAAAAATAAAAGGAAATCCCAATATATTTGTTTTCAATTTACTCTCACTTATCTAAATAAAAAAATGTCCTAATTATTTTGTATTTCTATGTTTGCTCTTTTTATGGACATTATTTCTTGGTTTAATGTCTCGGTAGGTCCCTATTTTCGGCGTGAATCTCAAATAGGTCCCTTTTCTTTTCGGCGTCTCAATTGGGTCCCCATTTTTGTAAAATTGTAACAATTAGGGGTCTGCCGTCAAATTGGACAAACGGCCGTTTAATTGTTGCTTACGTGTCAGATGGGAATCATGCCACGTGTCATTACTGAAAACACTGTTCATGCCACGTAAGAAACAATTAAACGGCCGTTTGTCCAATTTGACGGCAGACCCCTAATTGTTACAATTTTACAAAAATGGGGACCCAATTGAGACGCCGAAAAGAAAAGGGACCTATTTGAGATTCACGCCGAAAATAGAGACCTACCGAGACATTAAACCTTATTTCTTCCACACTTGCCAAAGAAGCATGTGTGTGCATAGGCAAATTGTGAGAAAGAGCAGGGGCTTTTGTGTGGAGAATAAAATAATCAAAGGGTAGATTGGTCATTGAGAAAAGACCCAAAAATGAAGACATGTAGTTTACGTTGGGGTCCCAGGACAAGTGGTCTGAGACGCCACACAACAATTAGAAGAAGCTTCTCTGAAAACTCACTCAATCAAAACGCTCTTTTGCCTGTGTTACGCAGTGCGCTGATCTTCTTTCATTCCTTGGTCTCTTTATGCTTCAGAAACGACAACGTTAACTCTTCTACTACTTCTTACATCACATCACACACACCATTAACTTTCAACCTCGATCTTCGAGTGGTTTGGTGAAGAACTCCTGCCTCTGCCACACTCATTAATTTCCCAATTGCCCAGCCCGGAAGCTAAAGGTATGCATATATATCATATCAACGTCACCCTTCATTTTTCTCTCTGTTTTCCATTCCAAACTTCATTCAAACCTTTATTTCCTGTGAGCATTTATTGAGATAGATGGCTGTCCAACCGCATCCTTCACAGGATTTAATTTCCGTTTCTCCAAAGTCAACCGTATATTTAAACGCTTTTCCAACTTCCTCAAAAGCCTAACTCTTTATTACAGCAGAAAGCTGATGATTACACCGTTCCCTCAAATCCAAGTTTCATTTCGCATCCAGAG


Gene Sequence:
>Vu_05964(-)
ATGTTCCACCGCAGCACAAAGTTCGCACTGCTTCTCACCATCTTCGTTTTCTGTTCAACCATCGCCCGAACCAGCAGCAACTGCCAGCCCAGTTGCGGACAACATTCCCTAAAATACCCTTTTGGGTTCTGTTCTGACAGCAAAGTCAAACTAAACTGCAGCAGCGACAGTACGAAAGTCAAAATCGGCGAGTTCGAGGTTCAGAATATAACCTCTGATAGCATATTCGTGAGTCTTCCGGTGAAGTGCAACCGCAGCTTGCGAATCATAGACCCTCTTTTCGGCGTCAACTTTGCTCCTACGTTCAACAATAGCTTTCTGTTGCAGGGTTGCAAGTCCAAACAGAATGGCTGCGATACTACCCCATCGAGTTTCGTTGGCGAGCACGGCCCAGTGGAGGGGTGTGATTGGGAAAACAAAAGTGAAAATTTTATTTGCTTCAAGCGGTTGCCGCGTAATAATAGTTCGCGTGAAGATGTGCTCCAGAGTGATTTGAAAGGAATTGGGTGTAGCTTCTTGTTTTCTGCCATTGCTTATGATAAGAGTAAAGGAAAAGAGCTTTCGCTACAATTACAGATGCTTGAGTTGGGGTGGTGGCTCAAAGGGCCCTGTAATTGCTCCAATAATGCATCCTGCACGGTGGTCAAGCTTGCCACAGGAGATCCAGGCTACCGGTGCCGGTGCCATGAAGGTTTCGTAGGCGACGGTTTCAAAGACGGCGATGGCTGCCGGAGTAGTGAGTCTTTTCTCATTCTTATTACAAGTTACTTTGTGGTTTTGTATTCATACCTGTTAAGTCTAGTTTAATTACACTTTCATTCTGGTTAATACATTAATAGTAGTAACAAGGTAAACGGTAAACAGTGTCTAAAGTGTTATTTAAGAAAAACGTTTAAATTGAGAGAGGAGGTATATGTATTGTTTGCTTTTCGTGAAGTAGTTATTGTAATGATGATGATAATGGATGGTGATTATGATTGTTGAATGATGACCAAGTGGTGTTTGACATCTGGTTGCGGCTTTATGCTTTGGGCAACCAGGTTGGTTTAGTTTATAATACTAGTGTAGGATTGTGCATCGGGAATTTCGGGGATGAGGTTTTTTAAGTGGGGGAATCTCTGAAAGATCAGTGTGTGCTTTATCAAGGTTCACAATGGGAATATTTGATTTGTTAGGGGCATGGGCGGTATGTAGATTTAAGCATAAAGTTCAATATTTTGATTATTGTGGACCCATTTGGACCATGATGATATTGATTCTCTTTCTGGGTGTGGGTGTTGGTTTTTGAGTTAATGGGTGATTAGTGACCCAGAATTTCGCAGAGAATATGGAAGAATGGAACTGTTCAATGCTAGGCTTGATATGTTTTTGTTTTGAAGGGTAATCTGCGTAGGAAATAATTCTTCAGAAGTCAACATGCTCTCATGGTACCTTTGGATTATTTATGGATCAAAATGGTAGGTAAAGCACATGTCTGGTAGGATGAATTTGAATTTTTTTTTATTCTATATTATAAGTGGTCAGAGGGGAGAGAGTGGTGCCAAATACATTTATCAAGTGGGGAAGTAGGAAATGAACCTAATATTACATGTAACTTCTTAGTTCAGGACATCACCGACCGACGCTTGTTGCTTATCATTTTTTCTTTTTCTGACACTAGAAGTTGAAGTTGAGTGTGATACGAGTCATTGGAAAACTAAAATTAAGTAAACATCTTCTTTGACGCAATCTATAAGGAATATTATTGAAGGCACGACAGATCCGGTTAGAATTGGTCAGTAGATACACGGATATGAACTCACCGACAGGTTGTAGATATGAATAATGCCATGATATTTAGTTGTTTACTCTATTGTTTTGGTGTCTGAAATAGAATTATGGGTGTAAAAAAATCAGTTGCATCTGCCACAATTCTTGTATTAACTATTTCATTTCATTGGACACTTAAGCTTCTGTGTATTTAATATTGTCGTTTTTCTAATCCCCTTTTTTTCATTTTAGCCTTTTCAGCAGTTCCTCAATGCAAACCTTCAACACTATGGCTTTGCAGATGTAGAAAAGCAATCAAAATCGGTGTCCTTGTTGGAGGTAGAACCTTACGGAATTCAGCCAATATATGACCCTCTATGTAGTATAGTTCATAGATTTATTTTATTCAATGCTTTCCTGATAAATGGACCTCAGTTTCTTGTTAATAATTAGTTTACCAGTATTGATTATTGACTGCATATCTTTATTAAAAGATACTAAAATAAGCAAAAGTTGGAGAGAACTGAACAAAAAGTAAATCAGCAAGAGTTGGAGAGAACTGAACAAAAAGTAAATCAGCAAGAGTTGGAGAGAACTAAGCACTAACTGGATTTTGTGTTTTTCTTGATTGAATTATTTCTCTATTCCCATTATCCGGATACATAATCGATTCAGTTAAAAACGTGTAGTAGAATCTGAACAAGTGCTGCATTGTTGCTTACAGGGGTGATAATTGTGGCTACCCTGGTGGTTGCTCTGTCTCTTCTATGTTACTTTACTAGGCGTCGTTCCTCTTGGCTGAGAAAACAAGTTACAGTAAAGCGCTTATTACGAGAAGCTGCGGGCGACTCTATTGTTCCTCTATATCCGTACAAAGAAATAGAAAGAGCCACAAGTTTTTTCGATGAAAAACATAGGCTGGGAACTGGGGCATTTGGCACAGTTTATGCTGGACACCTTCACAACGATGAGTGCGTTGCTATAAAAAAGATTAAGTATAGAGACACCAATAGTGTTGACCAAGTCATAAACGAGATCAAGCTCCTTTCTTCAGTGAGTCACCCAAACTTAGTACGCCTCCTAGGTTGCTGCATAGAAGGAGGAGAACAGATACTTGTGTATGAGTATATGCCCAATGGAACACTATCTGAACATTTGCAAAGGGAGAGGGGCGGAATACTTCCATGGACAACAAGACTCACCATTGCTACAGAAACTGCTAATGCTATAGCATATCTCCATTCTGCCATTAACCCTCCGATATATCACAGAGACATAAAATCCAGCAACATACTCTTGGACTACAGTTTTCAATCAAAAGTGGCAGATTTTGGGCTTTCTAGGCTTGGAATGTCAGAAACATCACATATCTCAACCGCCCCACAAGGGACCCCGGGCTATGTTGATCCCCAATACCACCAGAACTTTCACCTTTCTGATAAAAGTGATGTCTACAGTTTTGGAGTGGTTTTGGTAGAGATAATAAGTGCAATGAAAGTGGTTGATTTTTCGCGACCTACAAGTGAAATCAATTTGGCTGCACTTGCAGTTGAAAGGATTAGGAGGGGTTGTCTCGATGATATCATTGATCCCTTCCTTGAGCCACATAGGGATGCTTGGACACTCTATTCTGTTCACAAGGTGGCTGAGCTTGCATTTAGATGCCTTGCTTTTCATAGTGACATGAGGCCTACCATGATTGAAGTGGCTGAGGAGCTTGAAGTTATCAGACGCAGTGAGTGGGAAGCTTTGGAGGAAACCATATGCACAGCTTCATCGGTTGGGTCCGTTTGTTCATCGCCTCGAATAGGAAGAGAGAATTCATTGGTTGGTGTTAGTTTTGAGAGAGTTGCAGGGCAAGGGAGTGAGACATTGATTGTTCCACCCAAGAGTGAAATGTTTTTGCAATCAGTGAAGGAAGTGAAGGACAACTCTCCTGTATCTGTGCATGATGCTTGGCTCAGTGGAACTAGCTCACCTTCAACAAATTGCTAG

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