Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05929 LG1 88032068 88034313 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of shoot system development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, cell differentiation, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of shoot system development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
C/A 88032630 synonymous_variant p.Thr66Thr
C/T 88032876 synonymous_variant p.Asn148Asn
C/T 88032900 synonymous_variant p.Asp156Asp
A/T 88032914 missense_variant p.Asp161Val
C/A 88033218 synonymous_variant p.Ile262Ile
C/A 88033371 synonymous_variant p.Gly313Gly
G/C 88033422 synonymous_variant p.Val330Val
G/A 88033518 synonymous_variant p.Ala362Ala
A/G 88033554 synonymous_variant p.Glu374Glu
G/A 88033623 synonymous_variant p.Ala397Ala
T/A 88033624 missense_variant p.Phe398Ile
C/G 88033989 missense_variant p.His519Gln
A/G 88033997 missense_variant p.Lys522Arg
C/T 88033999 stop_gained p.Arg523*
C/A 88034006 missense_variant p.Ala525Asp
C/G 88034037 synonymous_variant p.Ala535Ala
C/T 88034055 synonymous_variant p.Ala541Ala
T/C 88034144 3_prime_UTR_variant
G/T 88034145 3_prime_UTR_variant
A/G 88034194 3_prime_UTR_variant
G/T 88034243 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05929.1
MRVPSSQQPNTHSPNPNLLLHTTTTTNTTFTYEPTSVLDLCRSPSPEKKPTVPKPEPQHNLTTTTTTATTTNTNNSLDLDDHVLPNSDWWESIMKDLALPEDSPTTLSKPNNINPCIPDFPPSHDPPFDHPPDFTSLSEIYNQNLPYNYTTTNPLDHSFHDLNHHHHNPTINVNNWDFIEELIRAADCFDNSHFQLAQAILERLNSRLIRSPMAKPLHRAAFHFKDALHSILSGSNRAASNRLSSMAEIVQTIKTFKAFSGISPIPMFSIFTTNQALLETLNGSSFVHVIDFEIGLGIQYASLMKEIAEKAAGASLLLRITAVVPEEYAVESRLVRENLNQFAHDLGIRVQVDFVPLRTFEAVSFKAVRFVDGEKIAVLLSPAIFCRLGSVGASVGAFLADVRRMAPGVVVFVDGEGWTEATAAASFRRGVVNSLEFYSMMLDSLDASVAAGGGGEWVRRIEMLLLRPKIFAAVESARRRSPAWREAFYGAGMRPVQLSQFADYQAECLLAKVQIRGFHVEKRHAELVLCWHERAMVSTSAWRC*


CDS Sequence:
>Vu_05929.1
ATGAGAGTTCCCTCATCCCAACAGCCCAATACCCATTCTCCCAACCCAAACCTCCTCCTCCACACCACCACCACCACCAACACCACCTTCACCTACGAACCCACCTCCGTCCTCGACCTCTGCCGCAGCCCCAGTCCCGAAAAGAAACCAACTGTCCCCAAACCAGAACCCCAACACAACCTCACCACCACTACCACCACCGCTACCACAACCAATACCAACAACAGCCTAGACCTGGACGATCATGTCTTGCCAAATTCCGATTGGTGGGAGTCCATCATGAAGGACCTGGCCTTACCCGAAGATTCTCCCACAACCCTCTCCAAGCCTAACAACATCAATCCATGCATCCCTGATTTTCCACCTTCTCATGACCCACCCTTTGATCACCCTCCCGACTTCACCTCGCTTTCAGAAATTTACAACCAAAACCTCCCCTACAACTACACCACCACCAACCCTTTGGACCATTCCTTTCACGACCTCAACCACCACCACCACAACCCCACCATCAACGTTAACAACTGGGACTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAACAGTCACTTCCAACTGGCTCAAGCCATACTCGAACGCCTCAACAGCCGCCTCATTCGCTCACCCATGGCCAAACCGCTCCACCGAGCCGCGTTTCACTTCAAAGATGCTCTCCATTCCATTCTCTCCGGTTCCAACCGTGCCGCTTCCAACCGCCTCTCCTCCATGGCCGAGATTGTTCAAACCATCAAAACTTTCAAGGCCTTCTCGGGAATCTCTCCCATCCCAATGTTCTCTATCTTCACCACCAACCAGGCCTTGCTAGAAACCCTAAACGGATCCTCCTTTGTGCACGTCATCGATTTCGAAATCGGGCTCGGGATCCAATACGCCTCCCTCATGAAAGAGATCGCGGAGAAGGCCGCCGGCGCTTCGCTGCTCCTCCGCATCACGGCAGTCGTGCCAGAGGAGTACGCCGTGGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAATTTGCGCATGACCTCGGAATCCGCGTTCAGGTGGACTTCGTCCCGCTTCGGACCTTCGAGGCGGTGTCATTCAAGGCGGTAAGGTTCGTCGACGGCGAAAAGATCGCGGTGCTGCTGTCGCCGGCGATCTTTTGCCGCCTCGGATCCGTTGGCGCCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGATGGCGCCCGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGGCTACCGCTGCGGCCTCTTTTCGGCGAGGCGTGGTGAACAGCTTGGAATTTTACTCCATGATGCTGGACTCGCTGGATGCGTCTGTGGCGGCCGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTCGCAGCGGTGGAAAGCGCAAGGAGGAGGTCACCAGCGTGGAGGGAGGCATTTTACGGCGCCGGAATGAGGCCAGTGCAGCTGAGCCAATTCGCCGATTATCAAGCGGAGTGTTTGCTGGCGAAGGTGCAAATCAGAGGGTTCCACGTGGAAAAACGACATGCTGAATTGGTGCTCTGCTGGCACGAACGAGCCATGGTTTCCACGTCAGCCTGGCGGTGCTAG


Promoter Sequence:
>Vu_05929::LG1:88030068-88032068(+)
TATATTATTATTATATTTTGTCCACATTTTTAGTTTTTTACTCTAGTCACCAAATAACTAAATCAATATATGAAAAACAAGAATGTTTTAGATGTAGGATCAAAGATTTCCACAAAACATTCACACTTTATTTCAAATTTGTTTTGGTATTCCTCAACGTTTTTAGTCAAAGTCATTCCTTGTTGTTCTTTTAAAAAAGACATTTCGACACTCAAGTAACTGATTAATTTGATCAGGATCATAGTAAAATCTTAAATTCGCAATAAATGTAATTACATACCTTCTTACTTTTGAGTTATATTTATAGGTTTCGAGATAAACATGAGATTAGTAAAATCCTAATCACGACTCAATCATAACCCATCACCTACTAAGTAACGCTTACCCAGTAATTTTGATTATCAATCATCTCTTTTTGATGACCTATCGGGTATCGAAAGAAAGAAAAATTTTGTAATTACACAATATTGAGATGACTTTATTTGTAAATCTTCTTAATCGAACAAAAAAACATAAAATACTTAAAATATATGCCTTTCCACACATTTAAATCTTCGTAAATTCATAAAAACAAACGAATAGGTCACCCGAAAATCTATCAACAAAAATGATACTTATGCGCAAACAAACAGGGCGTAGATGATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAGAGATGAAGTACTGTTATGAAACTAGAAGCAAAAGATGCAAGTGATTATGCTTTTTAGCCGAAAAAGATGATTGAATTAGAATGTCAAACAAGGCCATAAACAAGTAAAGCTTAGTAATAATAATAGTAATAGTGACAATGAATTGGGATATGAAAACCTGGCACATGAGTCATGCATCTATCTCAGCAAAAGAATAAAGCTAAAGTACTTTCTTTCTTTGTACGGACTATTTAGTCGATGTGATTGGATGTACTATCCATGCATGCTGCTTAAACATCATCATTAATTCCCAACATTTTTTACTGCTCAACTTTAATAAAACCGAGTAAGTCAAAAGCACTTTATTCCTTTTCATCAACGCTGTTTTCTTAACTTGAACCATTTTCACATTTCACATCGATACTTACTACTCTGCACTAAGATATTCTATTTGATTTTCGTTCAAGGCTCATAATAATTAAATGTATTCGAATGACGGTTTATCATAATTTTCTCTTGTTAAATTATTGAAATTGATAGATATTTTTTTATTGTAACAAAAACTAAATTTATTTCCGACAAGAAAAAGAACATTTAAGGTAGTGTGACTTGTGCATTATTAACAAAAACATAAAATTATTTAAAAAAAGTAAATGATAATTTTAGTTTCTTAAAAATTGAAATTTCCTAAACTTTTCAAATTAATATTTCATTTAGAACTTGTACGTTGAAATGGAAATTTTTTTGATGCAGTGAAAGATAAAGCAACTAAACCCTCCATGGAAAGTAGCTAATGATGAACCTTTTCCCTTAACTTCTCTTTATATGTATAAAAAAGATGGTGGTAGTACTTGTCTTGGAGGGTCCATTACACACAGCTTTTGCGGGACCAATTTCAACGGTTTAACTTGGAGCTTTAGTGCTGCCACTATTTTACCCTTTTAATGCGAAGTTCACTCCCAGCGATTAAATCAAGAATGAGATTTGGTGAGATAGATTAGTGAGTACATATAAAGAGCTGTGTTGAAAGAAAAATTGGTTCCGGAATATGATGGAATCGATTTTGTGAAGCTTGTGTAGAAATTGGTTCTCCTATCATTTGAAACCGATTTCAATAATTTTAGATTTGTTTGAAGCTTATTATTAATAATAATAATAATAATAATAATAATATCAATAATAGTGGTGATTCATGCATTATTATTATATAGAACAGATTCTAATATATTATTATTCAAAAGACTAATATATAAAGAACAGGCAAGGAGTTTTAGGTA


Gene Sequence:
>Vu_05929(+)
AAGTGTATAGGTGTGAGTAAAATGAAAAGGCAAGAAGGAGGTTTAGGGCAGCTTGACGTAGAAGCTTGAGATGGTGGTAGAAGATGCATGGTATGTATGCATGGATGTATTGATAGATGGCATTGGAGAGAGAGCGATAGAGATATTAAGTGTAACCCACAAGAGGCTGGTTTAGACACACGCACACACACATAGAGACCACAGGACACGCAAAGATAAAAAGGCCTCTCTCAGTCTCCTAAACTCTTCCACGTTTCCCAAGGAAAGTAGCCATCGAACAAACAAGAATAGAACAACTCTGTTGGGAAAGCCACAAAGGCATCATCATCATCATATCATCAACACAGCTTTTCCTTCGCTTAGAGATGAGAGTTCCCTCATCCCAACAGCCCAATACCCATTCTCCCAACCCAAACCTCCTCCTCCACACCACCACCACCACCAACACCACCTTCACCTACGAACCCACCTCCGTCCTCGACCTCTGCCGCAGCCCCAGTCCCGAAAAGAAACCAACTGTCCCCAAACCAGAACCCCAACACAACCTCACCACCACTACCACCACCGCTACCACAACCAATACCAACAACAGCCTAGACCTGGACGATCATGTCTTGCCAAATTCCGATTGGTGGGAGTCCATCATGAAGGACCTGGCCTTACCCGAAGATTCTCCCACAACCCTCTCCAAGCCTAACAACATCAATCCATGCATCCCTGATTTTCCACCTTCTCATGACCCACCCTTTGATCACCCTCCCGACTTCACCTCGCTTTCAGAAATTTACAACCAAAACCTCCCCTACAACTACACCACCACCAACCCTTTGGACCATTCCTTTCACGACCTCAACCACCACCACCACAACCCCACCATCAACGTTAACAACTGGGACTTCATCGAAGAGCTTATCCGCGCCGCCGATTGCTTCGACAACAGTCACTTCCAACTGGCTCAAGCCATACTCGAACGCCTCAACAGCCGCCTCATTCGCTCACCCATGGCCAAACCGCTCCACCGAGCCGCGTTTCACTTCAAAGATGCTCTCCATTCCATTCTCTCCGGTTCCAACCGTGCCGCTTCCAACCGCCTCTCCTCCATGGCCGAGATTGTTCAAACCATCAAAACTTTCAAGGCCTTCTCGGGAATCTCTCCCATCCCAATGTTCTCTATCTTCACCACCAACCAGGCCTTGCTAGAAACCCTAAACGGATCCTCCTTTGTGCACGTCATCGATTTCGAAATCGGGCTCGGGATCCAATACGCCTCCCTCATGAAAGAGATCGCGGAGAAGGCCGCCGGCGCTTCGCTGCTCCTCCGCATCACGGCAGTCGTGCCAGAGGAGTACGCCGTGGAGAGCCGCCTCGTCCGCGAGAATCTCAACCAATTTGCGCATGACCTCGGAATCCGCGTTCAGGTGGACTTCGTCCCGCTTCGGACCTTCGAGGCGGTGTCATTCAAGGCGGTAAGGTTCGTCGACGGCGAAAAGATCGCGGTGCTGCTGTCGCCGGCGATCTTTTGCCGCCTCGGATCCGTTGGCGCCAGCGTCGGCGCGTTCCTCGCCGACGTGAGGAGGATGGCGCCCGGAGTGGTGGTGTTCGTGGACGGCGAGGGGTGGACGGAGGCTACCGCTGCGGCCTCTTTTCGGCGAGGCGTGGTGAACAGCTTGGAATTTTACTCCATGATGCTGGACTCGCTGGATGCGTCTGTGGCGGCCGGGGGAGGCGGCGAGTGGGTGAGGAGGATCGAGATGCTTCTTCTGCGGCCGAAGATCTTCGCAGCGGTGGAAAGCGCAAGGAGGAGGTCACCAGCGTGGAGGGAGGCATTTTACGGCGCCGGAATGAGGCCAGTGCAGCTGAGCCAATTCGCCGATTATCAAGCGGAGTGTTTGCTGGCGAAGGTGCAAATCAGAGGGTTCCACGTGGAAAAACGACATGCTGAATTGGTGCTCTGCTGGCACGAACGAGCCATGGTTTCCACGTCAGCCTGGCGGTGCTAGAATAATAATACAGTATACAAGAGAAGAAGTAAAAATAATCCAACGACACCAAAACCTTATTTTACCTGTTTTAGGATGTGAACTTTATTATCAAGTTCACTTTGACAAAGATTCTAGTTTAACTGTAATTTAGTTTATTATGAAAAGTTTAAAATGTAAGAAAAAAACCCTGGAAGGTACATAAACTTGTATTTTTTCCAGACTTTTTTGCTTTATGTAATGTAGATAAATTGTGGGGGTGTCTAT