Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05872 LG1 87206332 87207891 PREDICTED: protein SHI RELATED SEQUENCE 1-like isoform X2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, negative regulation of gibberellic acid mediated signaling pathway, negative regulation of gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, anther development, negative regulation of gibberellic acid mediated signaling pathway, anther development, negative regulation of gibberellic acid mediated signaling pathway, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, anther development, gibberellic acid mediated signaling pathway, positive regulation of transcription, DNA-templated, gibberellic acid mediated signaling pathway, response to gibberellin, pollen development, response to gibberellin, positive regulation of transcription, DNA-templated, negative regulation of gibberellic acid mediated signaling pathway, gibberellic acid mediated signaling pathway, anther development, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA binding, protein heterodimerization activity, DNA-binding transcription factor activity, protein binding
SNP Position Effect Amino acid change
T/C 87206525 stop_retained_variant p.Ter244Ter
C/G 87206854 intron_variant
C/T 87207149 intron_variant
G/A 87207568 synonymous_variant p.Cys108Cys
C/T 87207623 missense_variant p.Arg90Lys
G/A 87207799 synonymous_variant p.Thr31Thr
C/A 87207867 stop_gained p.Gly9*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05872.1
MAGLFSLGGGRGSNNNQQDNTANNEIPAAETLFWYSKTDDVSSYRGFELWNQQQEQHVMPPHARPLLQRDLYSSGVGPSRGVSDDHSSSRSAFVAMRAAEGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLAALQEQQQQQRDLSKRPRDPTACTRLPSSGLEEGHFPSVVSSPAEFRCVRVSCVEDADDRYAYQTAVNIGGHLFKGILYDHGPENSNNNNSNNNSNNYMAGETSAGVAGAQPLNLTASGVVTSSGALVDPSSLYSAPVNTFMGGSGTQFFPHTRS*


CDS Sequence:
>Vu_05872.1
ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTGCCAACAACGAGATTCCTGCGGCCGAGACCCTATTCTGGTATAGCAAAACTGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGGCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCTATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCAAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGACTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACCATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA


Promoter Sequence:
>Vu_05872::LG1:87207891-87209891(-)
TTCTATGTTATAGGAAAAGGTGATCAATGAAAAGTTGATGCATTTCATATTTTTAAAAGAAAAGCATTTAAGATTTTGAAGATAGAAAAGAGATACTACCAGCATTAAGATTCATTATTATTTTAATTTATTAACATTTACTAAGTCATAGTAAGAAGATATAGGATAAGGAGTAAACATTTTGAAAAACGCATTACAAAATTGTAAGCCAAAAACAAAAAAAATATGATTTTATAATATTATTTTTGATTTTGCATTAACTTTGATGATACTTGTTGAGACTGTAGTTACCAGAAAATTACTGTAAGCAAAGGTTGGATAAAAAAAAATGAGAAATTTGAAAAAAGAAAGAGAAAAGGTACAATGACAATTTGGTGGCGCTGTGTTCCCCTGTTTGAACGCATATTTGTTTGAGGCCACATGATTATTTTCATGGAAATTCGATCTGGTTGCCTCTTTTTCACCCGTCGAAATCTCTACCTCTTATATAATATAACTAATCACCCCACTGTTTTATTAGTTCATTGTGACAAAGAGCATAATTTTTAAAATATGAGAAGAGTGAAGTTTAAACTACCTGCGTTTTAGAGAACCATTATCATACCGGGATGCTGGTTAATTTAATTTGCATGAGAAAAAGAAAATGTGAAATATGAAGAGGGAGGTAAAGGGTGATAAAGATTAAGGAGGGGACAAGAGAATTTTATTTTAATGGAAGCGAAAACCATAAATTAATGGACACAAAAGGGGCAATGTGTCACGAAAAGCAGCGGGTTTTCCGGTGCAAAGGACGAGGGACGCAGAAAGCTGTTTCTGTGACACGTGGCAGGGATCTTGGCCGTTGAAAGAACATGGGAAATTTGTAGCATCGGTGGGGATGAGATGGATGACATTACATTCATTCGGTTGCATTGTTGAGGAGAGAGAGAGAGAGGAGAAGGGAGTACTTGCTTACTGTGCAGTGTAGTGTAGTGGTTTTGTCATCGTGCGAACTTAAACACACAGGCTTCAGACACAAAAGGAGGAACTGCTCAGAACTAAAAAAAGAGCTCATAAACTCTGCAGAAAAAATCAGAGAGATAGAGAGAGAGTGTGAGGGGTTATTAAATTGAAGGAGCATCAGAGGGTTGCAGAGAGAAAGAGAGGGGCATGGCGGCGTTTGCAGTGCAGCGATAGCTGTAAAAAACTGTGGTACTGTTGTTGCTGCTGTGCTATGCTCTTTATTATTATTAATGCATAAATATATAATGTATATATTCAATTCATTCATTCACATATATACATATACATACAACACAATTACAAACAAACGCTGAATTCGGAGAGTGACCTAAGAATTGAAAGCGCGATTAACGCTGCCCGACACTGTTCGACGCCTGTCCTTAACCAACGAAGCTTCAATTACCCTTTCTCCAACCACAACGGCTAACCCATACCCATAACCACATGCTGTAACACAACACCCAACACACTCTTGTTCAAATATTTTAACCATTTTTCACTCTTTTCCTTCCTAAATAAAAATTAAAATACCAGTGCTATTCTGTGTTTTGTTTTTCTGTTTTTGCTGCTTGTGTTTATGTCTCTGATTGTGTGTGGAGGCTACACTATTGATGACTCTACACTACACAACACAACACAAAATCCAACCATCAGGGTTATAATTTCCTCAACATAAATTCAACCGAGTTCTACTTGCTATTGTTATTATTACTTGTATTATATTTATTGTTGTTCTTGTCCTCCTCTTCTCACTCCCAAATCCCAATTCTCAACCCCACGCCTCATTCAAAGCTCAAAACCCAGAGAATTAATTCAACCAATAGTTACAACTGGCAACTTATACCCGTGTTCTTTTGTTTTTCTTTCTCTTTTTTCTTATTTTTACATGCTTGCTTCTTTCTTCCTTTTGTTCTTTTCAATATCAAACAACCCACACCCATCCAGTTTTCTGATATGGATTTTGGGCCACAATTGAAGCTCGGGTCAGGTGCAGAACA


Gene Sequence:
>Vu_05872(-)
ATGGCGGGTTTGTTCTCATTAGGCGGAGGGAGAGGGAGTAACAACAACCAGCAAGACAACACTGCCAACAACGAGATTCCTGCGGCCGAGACCCTATTCTGGTATAGCAAAACTGACGACGTTTCATCCTACCGAGGGTTCGAGCTATGGAACCAGCAGCAGGAGCAGCATGTGATGCCCCCGCATGCGCGGCCTCTCCTGCAGCGAGATCTTTACTCCTCCGGTGTGGGACCCAGTCGAGGCGTCTCCGATGATCACTCCTCGTCTAGATCAGCGTTTGTGGCTATGCGCGCGGCGGAGGGTGGAATAAGCTGCCAGGACTGCGGGAACCAAGCAAAAAAAGATTGTCCACACATGCGGTGCAGAACGTGCTGCAAGAGCCGCGGCTACGACTGCCAAACCCATGTCAAAAGCACTTGGGTTCCCGCTTCCAAACGTCGCGAGCGTCAGCAACAGCTCGCTGCCTTGCAAGAGCAGCAGCAACAACAGAGAGACCTTTCCAAACGGCCAAGGGACCCAACCGCTTGCACTCGTTTGCCCTCGTCAGGTACATAACACACTCACCTCACCCACCAACTAATTCACTCCCAGTGCTTCTTGTTTTGTCTTTGTTTGTTCACAGTGATGCACACAGAAGGACTCGCAGTTTCTGTGATTGAGTGATGAATGAGAGTGGGGAAATAAAGGAAAGGAAAAGAAAAGAAGAGAATCTTTCGCCAGGGAAATTCTCTGAAAAGATATCGAGGGACTGGTGAGAAAGTTTTGGAAGTATACCTGCAAACAATGGAACCGTATCGATTGCGTGTGAACCAAAATCCACCATTTTCATATATCAGCTTTTCTTCTTTCTCTCTTTTTAAATTTTTTTTTTTCCTTAGCCCTTTCCCTTTCCCAAAACACTGTTATGTATTAGCCCTGACGAATGAATGGATTGACAGCAAGAAACTGTTTTTCCTCCTCTTTCTTAGCACATTCTCTCTCTCACTTCCACGCACATCCAGTCGCCTCCTTCACTTTCTTTCTTTGTTGATTATTAGGTTCTAGTTTTTCAGTAAAAAGACCCTTCTTTTTTCTTTTTTTGTTTCAGTCTGTTGCTTTTCTCTCAAACCATGGATCATTCAGCTACATGCCTAATGTTGTTTCTTTTTTTTGTTTCTTAATGTGTTGAAAAAAAAAGAAGGGTTAGAAGAAGGGCATTTTCCATCTGTGGTGAGTTCTCCTGCTGAGTTCAGGTGCGTGAGGGTTAGCTGCGTGGAGGATGCTGATGACAGGTATGCATATCAAACGGCTGTGAACATTGGGGGACATCTGTTCAAAGGAATCCTTTATGACCATGGTCCTGAGAATAGCAATAATAATAACAGTAATAATAATAGTAATAATTACATGGCCGGGGAGACCTCTGCTGGTGTTGCTGGAGCTCAGCCCTTGAACCTCACTGCTTCTGGCGTTGTCACTTCTTCTGGGGCACTTGTTGATCCTTCCTCCTTGTATTCCGCTCCGGTCAACACTTTCATGGGTGGCAGTGGTACGCAATTCTTCCCTCACACAAGATCTTGA