Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05862	LG1	86982664	86984574	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	86982798	missense_variant	p.Glu593Lys
A/G	86982814	synonymous_variant	p.Asn587Asn
A/C	86983186	synonymous_variant	p.Leu463Leu
A/G	86983192	synonymous_variant	p.Ser461Ser
C/T	86983199	missense_variant	p.Gly459Asp
A/G	86983447	synonymous_variant	p.Asn376Asn
T/C	86983606	synonymous_variant	p.Leu323Leu
T/A	86983815	missense_variant	p.Met254Leu
G/A	86984079	missense_variant	p.Pro166Ser
C/A	86984082	missense_variant	p.Val165Phe
C/T	86984095	synonymous_variant	p.Gln160Gln
G/A	86984356	synonymous_variant	p.Ile73Ile
G/C	86984367	missense_variant	p.Leu70Val
C/A	86984391	missense_variant	p.Gly62Cys
C/T	86984397	missense_variant	p.Ala60Thr
G/A	86984419	synonymous_variant	p.Cys52Cys
G/A	86984426	missense_variant	p.Ser50Phe
G/A	86984429	missense_variant	p.Ser49Leu
C/T	86984449	synonymous_variant	p.Leu42Leu
G/T	86984451	missense_variant	p.Leu42Met
A/G	86984457	missense_variant	p.Ser40Pro
G/A	86984465	missense_variant	p.Ser37Phe
C/T	86984473	synonymous_variant	p.Arg34Arg
T/C	86984504	missense_variant	p.Asp24Gly
G/A	86984525	missense_variant	p.Ser17Leu
G/T	86984533	synonymous_variant	p.Thr14Thr
A/G	86984540	missense_variant	p.Phe12Ser
T/G	86984574	initiator_codon_variant	p.Met1?

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05862.1

MAAIMLLLIFSFLTSISEPCHVVDKEALLEFKSRIISDPSKLLDSWTPSSDCCHSWEGIACGSTGRVINLTRIGVVFDVDEIPLETYMSGTLSPYLGNLSALQVLDLSNLKQLHGPIPSQLAKLSHLTKLFLYSNQLSGGVPASFENLSRLQSLYLDNNQLFGNVPFSVFASFKSLLQLGLSGNRLSGAIPSSVGRMVFLTRLHLHQNNFHGSIPSSIGNLVNLKDLDFSYNQISGRIPESIGRLSQLVFLDLMHNNLSGNLPFSIGDLSSLKFCSLAANKLTGVLPYSIGKLGNVRRVILENNKLTGMLPSTIGDLASLTDLFLANNEFSGKIPPSFGNLVNLQTLDFSRNQFSGLLPSQLAKLQSLQTLDLSFNPLGLAKVPKWISKLRVFQLKLAQTGINGQLPKWLAYSSVTTLDLSSNALTGKLPWWIGNMTRLSFLNLSNNQFHSSIPVAFMGLSSLMDLDLHSNKLTGSLRAVFEKEVQFSLGHFNSVDLSNNKFCGPIDDNIGQKASMSSIKSLALSHNPLGGSIPKSIGKLRELEILDLEDSGLSGNIPEELGDAETLTKINISKNKLSGNIPEKVLNLKKLEEFDVSRNRLRGRIPPHKAMFPISAFVGNRGLCGPPLPPCKLRYR*

CDS Sequence:
>Vu_05862.1

ATGGCAGCCATAATGTTGCTTCTCATTTTCTCATTTCTTACCTCAATTTCGGAGCCATGTCACGTGGTGGACAAAGAAGCATTACTAGAATTCAAGAGCAGGATCATCTCTGACCCTTCAAAACTGCTAGATTCCTGGACACCTTCGTCTGACTGCTGCCACAGTTGGGAAGGCATCGCATGTGGTTCCACTGGCAGGGTCATCAACCTTACTAGAATCGGCGTCGTGTTCGACGTCGATGAAATCCCTCTCGAAACCTACATGTCAGGAACCTTGTCACCTTATCTTGGAAACTTGTCTGCTTTGCAAGTTTTGGACCTTAGCAATCTGAAGCAGTTGCATGGTCCAATACCATCACAACTCGCCAAGCTATCCCACTTGACTAAACTTTTTCTCTATTCAAACCAGCTCTCAGGTGGGGTACCCGCGTCTTTCGAAAACCTTTCACGGCTTCAGAGTTTGTACCTCGATAACAACCAGTTGTTTGGTAATGTTCCTTTTTCTGTCTTTGCCTCCTTCAAGTCTCTTTTACAACTTGGTCTATCCGGGAACAGGCTTTCTGGGGCGATTCCTTCTTCCGTTGGAAGAATGGTATTTCTCACTAGGCTTCACCTTCATCAAAACAATTTTCATGGAAGCATTCCTTCTAGCATTGGAAATCTTGTAAACCTCAAGGACTTGGATTTCTCTTATAATCAGATTAGTGGAAGAATCCCAGAGTCAATCGGGAGACTTTCACAATTGGTTTTTCTGGACCTCATGCATAATAATCTCTCAGGAAACCTCCCTTTTTCTATTGGGGATTTAAGTTCTCTCAAGTTTTGCAGTTTAGCAGCGAACAAGCTAACAGGCGTTTTGCCTTATTCCATTGGAAAACTCGGCAATGTGCGTAGGGTAATCCTTGAGAACAATAAACTCACTGGGATGTTACCTTCCACCATTGGCGATCTAGCTAGTTTAACTGATTTATTTCTCGCAAACAATGAATTCAGTGGCAAAATTCCACCTTCCTTTGGCAATTTAGTCAACCTGCAAACACTGGATTTCTCAAGAAACCAATTTTCTGGTCTACTTCCCTCTCAACTTGCTAAACTACAGAGTTTGCAAACTTTAGACTTGTCATTCAATCCATTAGGACTAGCCAAAGTACCCAAGTGGATATCCAAGTTAAGAGTTTTTCAGTTGAAACTGGCCCAGACAGGGATCAATGGTCAACTTCCAAAGTGGCTTGCATATTCATCAGTGACAACCCTTGATTTGTCAAGCAATGCATTGACGGGGAAATTGCCATGGTGGATTGGAAACATGACTCGCCTTTCCTTCCTGAACCTGTCAAACAACCAGTTCCACTCGTCAATCCCAGTGGCATTCATGGGCCTTTCTTCTCTTATGGACCTTGACCTCCATTCCAATAAGCTCACAGGATCCCTGAGAGCGGTGTTTGAGAAAGAGGTTCAATTTTCGCTAGGCCATTTCAACTCCGTCGACCTATCTAACAACAAGTTTTGCGGTCCCATTGACGACAACATTGGACAAAAGGCCTCAATGAGTTCAATCAAATCTCTTGCATTGTCACACAACCCGTTGGGAGGATCTATTCCAAAGTCAATTGGGAAACTGAGAGAATTGGAGATTCTGGACCTTGAAGACAGTGGACTCTCAGGGAATATACCTGAAGAGCTTGGTGATGCCGAAACGTTAACAAAGATTAATATTTCAAAGAACAAATTAAGTGGCAACATACCAGAGAAGGTCCTAAATTTGAAGAAACTTGAAGAGTTCGATGTGTCAAGAAACAGACTCAGAGGGAGGATCCCTCCACATAAGGCCATGTTTCCTATTTCAGCTTTTGTGGGTAATCGTGGATTGTGTGGACCACCTCTTCCTCCTTGTAAACTTCGTTATAGATAA

Promoter Sequence:
>Vu_05862::LG1:86984574-86986574(-)

CGGAGAGGTTATCCAAATTATGGATGACATTGTGCTGATGACGTGAGGATAAATTTTATTATTTCATATTTATTTTTAAAGGAAAAAATTTATTCTAATCTTTCTACTTATATTTAATTAGTATATAATTCGTCTTATCTTATCTTTACCAGATAATAAATGTACCTGTATTTTGTTTGATTTTTTTACTATTTCAATATTAATTAATTAATATAATAAAAAAATTATAAGAAAAAAATATTATATTATCAAATATTTAATATTGAAAGGATGTTTTATTGTTTTTTAATATCAAATATTTTAAAAAATTATATATATATATATATATATATATATATATATATAATTCAAATTAGATAAAATTTAAGTATTTATTAATTTTATAAGCATTAATAAAACAAAGTTATAAAATTAAAAATATTCCAAGAAAATATTTTAATCTCCAAGACTCTTCATTTCAAAATTAGAGTTAAGGTGCTCTTGGATTTTAGTAATCTTCTCAGTCATCTCTGATGATTATCATGTCATCTATATAAATGATTATAGCGGAGAGTTTTCCTTTTCTCCTTTTTAGAAAAAGAGTATGATCAACATTGCTTTGTTGATATTTGAATTTCTTCATTGTCAAGCTAAACTACCCAAGCCACATTCGAGGTGATTGTTTCAACATATAAGGCCTTTTTAAGTTTACATACTAGTCTTCTATTAGTTGAGCTTGTATATCTTGGTGGGATGTTCATATTCACTTTTTCTTCTAAGTCATCATGTAAGGAAACATTTTTCACATCTAGTTGATGTAAAGACGAATCTAAATTAGTAGCTAAGGATATAGTAGCACTTTAATCATATTGAGTTTTGCAATAGAAGAGAATGTATCTTGATAATCTGTTTCATGTGTCTCAGTAAACCTTCTAGCTACTGATTAGCAATAGACCCATTTGATTTATATTTTAAGGGAAAAGACTCGTTTACACTCGACTCATTTTTTCCCTTCTAGTAAATCTACAAAATTCCAAGTGTTATTCTTTTGTAAGGCCTGTATTTTCTCTTCAATAACCTGAGTCCATTTTTGATCTTTCAAAACTTCTTTTACTTAAGTACTTGAGTATGTTTTTTGTTTCACTTAGATGATGACTTTCGATTTTGTTGGTGTGCATAAGGATTTTGACTTAAGATTCTTTATTCCAACTACAACTTTAAACTTCTTCTTTATACACATTATTTCACATCTGATATTACTAATAATAATATTAATGATAGTAATCTAATAATAATAATAATAATTAGTAGAAAAAGAGGAATAATAATAATAACAATATAGCAGAGGCTTCGACGTGAAGTTACTCTATTATATTTCCATCAACCTTTCCATAAACCTCAGAAGCAGAGGCTTTGAAGGCCAATCTCAAACTGAAGTCGTCCACCTTCATCATGACTTCCAATTGCAAGAAAATAAAAATAAAAATCACCAACAACAATGAAACTCGTTTGTCCACCAACATACATTCGATTAATTTGGTGCTTCTGGTAAAATAATTCTTAAAATTACAAACCATTACTTAATTTGTTTAGTTATAGAAATAGATATTGGATTTGTAAGTGACATGCATGTGTGAAAGTGTCTCTGTATAGTAATCCCACTCATTTTCCACTGAGGAGGCACAGATTTTGAAACATCAAAATTGCTTACAGTGATGGGATATATAATTGTAAAATCCCAACTTCTTTTTCAGGTTCTTTTTGTTGAACTAAAGGCACTTGCTTCCAAAGAGCCAAGTCAGGGAAAATCCAAGTTGCCGTTAGAGGCACATGCCTCTCTTCAAAATGCTGCATCCAAAGCATCAACAATTATCACTTTTCAAACATCTCCAATGCCATTTTCATACACCACTTTGGTGATGATCTCACAAGAAAACAAATAAATTGAATACTTCACTAGACAAAACATAACGCTCCTCATTCCACACAAAAACCAACCAACCTATTCATAGTTCTGAACT

Gene Sequence:

>Vu_05862(-)