Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05803	LG1	86327121	86327723	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of photoperiodism, flowering, positive regulation of transcription, DNA-templated, regulation of photoperiodism, flowering, regulation of photoperiodism, flowering, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, regulation of photoperiodism, flowering, regulation of photoperiodism, flowering, positive regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, DNA-binding transcription factor activity, protein self-association, DNA-binding transcription factor activity, protein binding

SNP	Position	Effect	Amino acid change
A/G	86327301	synonymous_variant	p.Arg141Arg
A/G	86327318	missense_variant	p.Ser136Pro
G/A	86327511	synonymous_variant	p.Ser71Ser
G/A	86327615	missense_variant	p.Pro37Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05803.1

MLSSSSINTTTTTCNRNNLNHKPLSSSLPSHFSHQTPTTNNTTNNKAMEDVWDGINLTSLSGHNTNTTPTSKGANFQDFLARPFNSFTVDTSPVTALTLSTRSEYPPPQKDLQSVHTASKTEPFAHPFSNKRATPSSRDMRDARLMKNRESAARSRARKQENIASSSTLSFRVSPKSTVSGFLLNNDLCPFCFFCVGLLV*

CDS Sequence:
>Vu_05803.1

ATGCTGTCATCTTCATCAATAAACACAACCACCACCACCTGCAACAGGAACAACCTGAACCACAAACCCCTCTCTTCCTCACTACCTTCACACTTCTCACACCAAACCCCGACAACCAACAACACTACCAACAACAAAGCCATGGAAGATGTGTGGGACGGCATCAACCTCACTTCCTTAAGCGGCCACAACACCAACACTACCCCCACCTCCAAAGGTGCAAATTTTCAAGACTTTCTAGCTCGACCCTTTAACAGCTTCACCGTGGACACATCTCCGGTGACTGCTCTCACCTTGAGCACGCGCTCTGAGTACCCTCCTCCGCAAAAGGACCTGCAATCGGTGCATACTGCTTCAAAGACCGAACCTTTTGCCCACCCATTTTCGAATAAAAGAGCCACACCATCTTCAAGGGACATGCGTGACGCACGACTCATGAAGAATCGTGAATCTGCTGCTCGATCCAGAGCCAGAAAGCAGGAAAATATTGCTTCTTCTTCAACTCTTAGCTTTAGAGTGTCACCAAAATCCACTGTTTCGGGTTTTTTGCTTAACAATGATCTTTGTCCGTTTTGCTTTTTCTGTGTAGGCTTACTTGTTTGA

Promoter Sequence:
>Vu_05803::LG1:86327723-86329723(-)

CCTTGAGTGAGGTCTTTATAAAGATGTTTTAGACTCTTATTCTAACACACAACTATACTTGTTAAATTGATTGAAGTGTGATCTAGGGTTTGTGTAACCCTTCTGCGCTGACTTTGAGAACTTGGTGTTGGCATAGAGCAAGAACTTTCACTGGGAGTGTGATCGATTATTATTATTGTTGCGAAGTGAAGTTTGTCATCCTTTGTGAAGATTCAAAGGAAGTGTTCATCATCCTTTGTGAAACATTCAAATGATATATTCATCTCTTGTGGTTTTCAGGGGAAGTGAGTATCATCTCTTGGGGGTAACAAGAGAGGTGTTTTTAAGCCCTTAAACTTGTCTTTATGTGTGATTGTAATAGTTTATTGGTTTTGTGATAATCTCTATTTGGAATTAGTAACTGGATGTAGGATTTTTGGGATCTGAACTAATATAAAACTACTTGCGCAAATCTCTATTTCCCTGCTCTTTATTGTTGTTGATATTATTTGTTAAGTGAATATTATAAAGAGAGAAGAAAAAATATTTTAAAGCACAAGAAATCAATTCACTCCATCATCTTAATTTTTGTCCAAACACGCTAATCATTTCGCTGCACTGCTCACAACCTTTGTCTCCGCTTACAACCTTTGTCTATGTACAATGAACTTGACCAACCATTATTCACACAAGTCAAACATAAAAGAAAAAATAAAGCATAATGCACATTTAATCCAGCCAAGGTTCAGACCCTTTACCTTATGCAATCAAACAACCACATCAACCAAACCAACTAGCATACATAGAACAATGCACACAGTTCTCATAAATTCATTCAACACATCACGTTAATCACATATAATAAAATAAATAAAACAAGTTAGACATACACATGAATCAAACACACAACAACCAGCCTATAACAAAAAGCTTTGGCCATATATATGTCACACTTTTCTTTTACTAAACATATAACTTCTTATTTTATAATATGCTGAAAAGACGTCCAAAACACATTTATATAATTTAGCTATTTTTTCATAGATTTTATAGTTTTCCTACTTTGTGAATCAATTATTAAATTCTTTAAGAGAAGTTGAATACTCAACACCAAGATCATAAAGAGTTTAAATAAGATATGACAAACAAAAATTACTCTTATATCAAAATCGATATATCTCATTTGCATGAGGACATTTATATTTTGTTGGTAAGTTGAAAATTAGATAATTAAGAATAAATTTTTTTAATAAAAAGGTATTTCGTATAAAATTGTGGTTATTTAAAAGAAGTAGTTTTAGCTTAAATTACTATGACTTGTATTAGCTGTGATTACTCTATATTTACATGTAATATTTTTCTTTCTTTTTAGAGGGATACTTTTAAGGTATATATATATTTCTATACGAAAATATTTAAATGACAATTAATTTTAGAGACAAAAAGTAATTGATCACTATATATTAACTAATTTAGACATTAATTTATAAATTAAAAATTATTAATCTCTAAAATAGCACTACATCAATAAAAAAGTTATAGTTAGTCACCAATTAAATTTTAAATTTGTCATTAACATTAGCTACCTACGAAAATGGAAAATGACAACTGAATTCACCATTATTTTCGAAAAATCCAAAATTGGATGGGTATCCTAACACGAACTCATCCAACTTTTTGTGTGTTGTTTGTTTATTTCATAATTTTGCTTTCAAGATTCTGCATGCATCGATTATTTTCACATCCTATTTTTTCCAGAGACACTAACACTAAAACAATCAGAAACACTAACTATACTTAACCTAAAGTAATAAAAGTTATGAAAGAGGTGCTTTTTGGACATGTCAGAAGTTGCAAACCAGGACAGTCGGGACATGACTGTTCATCACAGACAACGTACGAAACAGTGTAACCAACATCAGGCCAACTTAAAGACTGTTTCTTCATTTTTATTTTCACACCAGTGTTCCAAATTTGTCACCTTTCCATTCCAAATCCAGCCCCACTTCATCTTCCACCAA

Gene Sequence:

>Vu_05803(-)