Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05792 LG1 86252776 86255961 "PREDICTED: LOW QUALITY PROTEIN: protein kinase APK1A, chloroplastic-like "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 86252862 missense_variant p.Met29Ile
T/A 86253136 missense_variant p.Trp72Arg
T/C 86253147 synonymous_variant p.Ser75Ser
T/C 86253244 downstream_gene_variant
G/A 86253339 downstream_gene_variant
T/A 86253710 missense_variant p.Ser148Thr
C/T 86253749 missense_variant p.Arg161Cys
T/C 86253807 downstream_gene_variant
C/T 86254170 downstream_gene_variant
C/G 86254207 downstream_gene_variant
C/T 86254388 downstream_gene_variant
G/A 86254401 downstream_gene_variant
T/C 86254407 downstream_gene_variant
C/A 86254409 downstream_gene_variant
T/A 86254448 downstream_gene_variant
T/A 86254474 downstream_gene_variant
A/G 86254493 splice_region_variant&intron_variant
G/A 86254520 missense_variant p.Gly198Ser
C/G,* 86254523 missense_variant p.Leu199Val
T/A 86254725 downstream_gene_variant
A/T 86254732 downstream_gene_variant
G/A,* 86254762 downstream_gene_variant
A/G 86254845 missense_variant p.Glu221Gly
C/T 86254848 missense_variant p.Ala222Val
C/T 86255029 downstream_gene_variant
C/T 86255039 downstream_gene_variant
A/C 86255155 downstream_gene_variant
C/G 86255374 downstream_gene_variant
T/G 86255775 missense_variant p.Asp371Glu
A/T 86255923 missense_variant p.Lys391Asn
G/A 86255941 synonymous_variant p.Leu397Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05792.1
MLKMDMFYDMFFSIVQWIYVLAYMPSQGMTKLQVLVEISPPEIAQQPLRNRSGSGRKMSLEFIAGIFSALVVALLYWLFRKKVIPFLKQRKTLKAGKEHKSFEHDTISLRCFDFKELEKATANFSEDCLLGSGAFGNVYKGTFELEGTLAIKRAHFESFTSVDEFRNEVRLLSAVRHRNVIGLVGYCEEPEQDGAKILVYEYVPNGSLLEYIMGSRMSLTWRRRVKIAIGAARARPVVDSTDKQSNQHIIDWARPSIEKGSVEEIIDANLLCQSEPCNMEVMLKMGKLALRCVVEEPKHRPTMTQVCQELERALSSSDSFNSNKQSSKGFFTPIGLSQQSPKSETRGSVESYDCSQSFVSIDGVGLQKFHVDMDSFSFKSTNLRDFSNRMRKTHHSFPVLEFRI*


CDS Sequence:
>Vu_05792.1
ATGCTGAAAATGGATATGTTTTATGATATGTTCTTCTCCATTGTACAATGGATATATGTCTTGGCTTATATGCCGTCCCAAGGTATGACCAAGTTGCAAGTTTTGGTGGAGATTTCACCACCTGAAATAGCACAACAGCCTTTGAGAAACAGGAGTGGATCTGGTCGTAAGATGTCGCTGGAGTTTATTGCAGGCATTTTCTCAGCACTGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAAAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGCAGGAAAGGAACATAAAAGCTTTGAACATGACACTATATCATTAAGGTGTTTTGATTTTAAGGAACTAGAGAAAGCAACAGCAAATTTTAGCGAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACTTTTGAGTTAGAAGGAACTCTGGCCATTAAGAGAGCTCATTTTGAATCATTCACAAGCGTGGATGAATTCAGAAATGAAGTTAGGCTTCTTTCAGCTGTTAGGCACAGGAATGTTATTGGTCTGGTTGGATATTGTGAAGAACCAGAACAAGATGGAGCCAAAATACTGGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGGAAGCAGAATGAGTTTAACTTGGAGGCGAAGAGTGAAAATAGCAATAGGAGCAGCAAGAGCTAGACCTGTGGTGGATTCCACTGATAAACAAAGTAATCAACATATCATTGACTGGGCAAGGCCAAGCATAGAGAAGGGCAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCCTGCAATATGGAAGTTATGCTGAAGATGGGGAAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTGTGTCAAGAACTAGAGCGAGCCCTCAGCTCATCTGATAGCTTCAACAGCAACAAACAGTCTTCAAAGGGATTCTTTACACCAATTGGTTTATCCCAGCAATCACCCAAGTCTGAGACTCGGGGATCAGTTGAATCATATGATTGTTCACAGAGCTTTGTTAGTATTGATGGTGTTGGATTGCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAAACTTAAGAGACTTCTCCAACAGAATGAGAAAAACTCATCACTCTTTTCCTGTATTGGAATTCAGGATTTGA


Promoter Sequence:
>Vu_05792::LG1:86250776-86252776(+)
ACTGAAATAAGATCACACTTTCTCATCATAGCATAAGTCCGACTGGAATAACACTTCTTAGAAACTAACATGACCGAGCGCTATTTACGAATTTATCCACTTCAATAAACAAACCCCTAAGAGTTCAAACCGGACGCCCCGAAGTCTAGGCCGAGTACTAAGACTCTAGACCAAACACTTTTTAAAGACCAACACTGTTTGACACCCAATACTAATACTGATGAGAAACTATGAATTAACAAACACTGTCGAGTTTGACTGAAGACTCTTATTCTAGAAACGGTAATAATAGATTACTGAAACGAGACCCAACGCTTGGTTTAAGACCGAACCCTGTAGAAAACCGTACATTATTGAACGAGCGTTGGTCCAAGACCAAGTACTTATCAGGAACGAGCGCTACGGAGATCGAACGCTTGGTACAAGACTGAGCACTAATAAACTTACACCAAAACGAATGAATATATATGTGTGTGTGTGTGTGTATATATATATATATATATATATACACACACACACACACAATTGTGCCACACTTGTTTTTAATGAAAAACAACGATAATGTCTACGACTTTAAGTAGTATATACTACATTAACTAAACTGTTTAGGAAGCCTAAAGGAGAACTACATTTAGGCTGAACGCTCACTTACGTATATATAATATTATAAAACGATCTTCATGAACGACATTCTCTCCAGAAGAAGAATTTAGTATCGACGGACGCTCAAAGGAAAACTGAACGGCTAATACTGTCTCTCGGTCACAGTTTACCTAATTCTGCAGAGTATTACAGAATGACTCTTAGACAATATCCCTGAAGCATGAGAAATCAGTTAAGACCATGCACTTCCATGAAGAATCGAACGATCACTAATGACGCTCGACCATACTACAACATTTACTCAGTTCACACCTTTTATCAATCATCCATCCACACATCCAAACAAGCAGTATCATGCATATTTCATACTCATCAAATAATCAAACAACGTATCATGCAAACATACAAACTTTCAAAACAATAATCTTAATCAAATTATATAAGCTTCCCTTACCTCTATACGTAACTGAACGCTCACAGATATAGAATAGAGTTCACTACTACCAAAGTCTTAACGTTCGACAGTCACACTTTAAGAAACTGAACCAAACAGAAGACCAGAAATACTCAGAATAATATGATTCGCTCAAGCAACCAGAAATATGAATTTGCATGCGAGAAGAAACGAACGTGCTAAAGAGAAAGAAACTCACCGGCTTAGAACCGCAAACCGATCGGTTTAAACGAAAGCTCTTGACGCCGGAAGAGTTCAAACGGTGTCTGAGGGGTGATCGGAATAAGAGAGGATGAGATTTTCTTAAAGAGAAGATGGAGATGGTAGAGAGAAGGAGGAGATTTCAGAAGGTTGAAGATGGATGGTGCATGCAAAGAAGTGGCACGAAAATTTGAAAGTTTCAGTTTTACTCTTACCGTCAAAACCGTTCGTCCAATCTGTATCACACACTTGTCTTCTACTTTCTGAATTTCAGACGCTCCATTCGCTTACACCTGTACTCCACTAAGTTGGAGTTTTTATGGGTCTGACATTTGTAGTCAGTAAAAGAATTTAAACAAGGTCAGTTAGTGCAAAAAACACAAAAAAAAAAATAAAGTATCATAATAACATTGATTACGTCATTGAAATAATAAAAAAGATAACAAATAAGCTAAATATGCGGACCAAACCAAACACTAAAGGACGTTAGGAAATTGCTAATCAAAAAAACTTTACCTGGTCAGTCCTTTAAACATGGGACACTTACGTTGAACTCTGTCCGGCAAGTCTATTCAACTTTGAAAGTATGCATAAGACCACGAGAGGGACGAATATTAATTCTTGAATACTACTACACTATTTATGTACAAGACCACGTTGCTTCCTATTAAAAAAATAACAAGCTGCTAAAGTCATTTTTGTAGCAAATAATAACTTATTTGTTCTGTTCTCTGTTCGGAAA


Gene Sequence:
>Vu_05792(+)
ATGCTGAAAATGGATATGTTTTATGATATGTTCTTCTCCATTGTACAATGGATATATGTCTTGGCTTATATGCCGTCCCAAGGTATGACCAAGTAAGCCAAATTGAGAGTGCCCTTTAATAAACAAAAACATGTAACAATATCCTATGTAACATGTTACGTGATGGGTCCCACTAGAAGCTAGAAAAAGACATTTATGTCTCAAAAATTGTAGTTTTGGTGAGAACATAAATACTAAGGTTGCAAGTTTTGGTGGAGATTTCACCACCTGAAATAGCACAACAGCCTTTGAGAAACAGGAGTGGATCTGGTCGTAAGATGTCGCTGGAGTTTATTGCAGGCATTTTCTCAGCACTGGTAGTGGCCTTACTCTACTGGCTCTTCAGGAAAAAGGTCATTCCATTTCTTAAGCAACGTAAGACTTTGAAAGGTGAGTGAACTGATGGGTTTATTTCATAGAGATGGATTGTTAGAGAAATATTATATATATATATATATATATATATATATATATATATATAGAAAACATGACATTGAGTTTTATTTCACATAAGATTTTGCACCGCTTTTTATTCAAAATCTTAGACAACAAATTTATGGATCTTTCGTTTTGTATAATGTTTAACCTGTTTTCTTTATCTAACGTGAGATTTTGACTGTTTGGATTGTTCTAACATGAATGAACGAATGCAAGTAATTTAGGTAGTGAAGAAATCCAGGTATTTCTTTCACCTAAGGTGGCACTGAATCTTTGGAGGCTTTTTTATTGTTACAGCAGGAAAGGAACATAAAAGCTTTGAACATGACACTATATCATTAAGGTGTTTTGATTTTAAGGAACTAGAGAAAGCAACAGCAAATTTTAGCGAAGATTGCTTGCTGGGTTCTGGTGCATTTGGAAATGTCTACAAAGGAACTTTTGAGTTAGAAGGAACTCTGGCCATTAAGAGAGCTCATTTTGAATCATTCACAAGCGTGGATGAATTCAGAAATGGTTAGCCTCAATGAAGATAATTCTGCCTGTTTAACTCATGTCAATTCTCATCTCAACTCGCTCTCATCATGGTTTTAAAGTTGCAATCGTGGTCGCAAATACCTTTTGGTCTCCAATCATAATGCAGTATCATGTATCTGCAATTTTGATAATTGCAACCACAACTGCAATTCAAAACCATGACACCCCCAGAAAAGAAAATTCAATTTATTATTCTTGACGAGTATTTATTTGTTCATGGCAGAAGTTAGGCTTCTTTCAGCTGTTAGGCACAGGAATGTTATTGGTCTGGTTGGATATTGTGAAGAACCAGGTGACTATGACTGACAAAAATTCCCTCTTGATTGTGCAGTAAAAGTTGATGTTCTTAACATCGTGATATTAATTGTAAAAGCACATTGCTTTGGTAGTTTATATTCGTTACCAGTTATCAGTGTTCTGAGGAAGTTATTCCCAAACAAATTTATACTAACTTGGCCTAATTATTGTTAGAATAATGGTTAGAAAAACAAGGACTTGAGATTTAGTATTAGAAGATGGAGGGGTGAAAGTTAAGGAGCACTATTCTTATACTGTCATTTAGTCTGTAAATTGAAAAGTCATTAAGGACTTTGGGTTACGTTACTGTTTATGCTGCATTCAATCATGTAACTTAAGTGTCAAATACAATAAAATGTCTTGTATTTTCTCTATTCCCCTCTATCTTTCTAACAATCATGTCTTGATCAGAACAAGATGGAGCCAAAATACTGGTCTATGAATATGTTCCAAATGGTTCACTGCTTGAGTACATCATGGGTAAGTTTTCTGTTTATCCTTCTTAAACAACACAATAGTCAAAGCTATTATGTGTACGCTCAAGGATTTTCTTTCACTTCTAACGTGTTTCTTAACTTGAACATCGTATCAGAAACATGAATAAAGAAGACAGAATTAAAAGATAGACGAAATTTGATTAAAAGGATTTAAGCCGTGAACAGAAAACTCATTATTGGCTTCTACTGTTTATTCTGCAAGCACAAATGCATGGCTAAGAATATTAGCTTTTTGTAGGAAGCAGAATGAGTTTAACTTGGAGGCGAAGAGTGAAAATAGCAATAGGAGCAGCAAGAGGTTTGTCCTTTAAATAATAGTCCCCAGTTGATTTAACAAGAAATCCTTGAATTAAGACAGAATTGCTATGTTGGTACATTTTACAGGCATAGCTTATTTGCATGAAGGTGTGAAGCCAAGCATAATCCACCGTGACATCAAACCAAGCAACATCCTACTAGGGGAAGGTTTTGAGGCTAAGGTTTCGGATTTTGGGTTAGTGAAATCAGGTCCAACTGGTGATCAGTCACATGTGAGCAGCCAGATAAAAGGGACACCAGGGTACCTTGACCCAGCCTATTGTTCAAGCTTTCATTTGACCAAATTCAGTGACGTTTATAGCTTTGGTGTCATACTTTTGCAACTTGTTTCAGCTAGACCTGTGGTGGATTCCACTGATAAACAAAGTAATCAACATATCATTGACTGGGTAAGCAAGCAATGCATAATGCCCTTAATCTTCCAATGCAAAGATTTGCTTGTTTTGTTATTGTTCTAAACCAAGAAGATCATCATAGTTCATTACTCATTACAACAGATTGGTACATGATGCAGGCAAGGCCAAGCATAGAGAAGGGCAGTGTTGAAGAAATCATAGATGCAAATCTACTATGTCAAAGTGAGCCCTGCAATATGGAAGTTATGCTGAAGATGGGGAAACTTGCTTTAAGATGTGTGGTTGAAGAACCAAAACATCGCCCAACAATGACTCAGGTGTGTCAAGAACTAGAGCGAGCCCTCAGCTCATCTGATAGCTTCAACAGCAACAAACAGTCTTCAAAGGGATTCTTTACACCAATTGGTTTATCCCAGCAATCACCCAAGTCTGAGACTCGGGGATCAGTTGAATCATATGATTGTTCACAGAGCTTTGTTAGTATTGATGGTGTTGGATTGCAGAAATTCCATGTTGATATGGATAGTTTCTCCTTTAAGAGCACAAACTTAAGGTGCCTAGAAAATAATAGTATTAGTATTGACATGAATAGAATGTAATGGTAACAGTTTTTGTATTGATAACAACAATTTGGAAACAGAGACTTCTCCAACAGAATGAGAAAAACTCATCACTCTTTTCCTGTATTGGAATTCAGGATTTGA