Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05753 LG1 85823914 85826406 probable serine/threonine-protein kinase CST
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 85823919 5_prime_UTR_variant
A/G 85823931 5_prime_UTR_variant
A/T 85823946 5_prime_UTR_variant
T/A 85824013 downstream_gene_variant
T/A 85824033 downstream_gene_variant
C/T 85824041 downstream_gene_variant
G/T 85824083 downstream_gene_variant
T/C 85824087 downstream_gene_variant
T/G 85824110 downstream_gene_variant
T/C 85824111 downstream_gene_variant
G/A 85824165 missense_variant p.Gly20Glu
C/A 85824239 missense_variant p.Leu45Ile
G/A 85824248 missense_variant p.Ala48Thr
C/A 85824249 missense_variant p.Ala48Asp
G/C 85824251 missense_variant p.Asp49His
G/C 85824254 missense_variant p.Gly50Arg
A/C 85824260 missense_variant p.Ile52Leu
C/T 85824274 synonymous_variant p.Pro56Pro
C/G 85824286 synonymous_variant p.Val60Val
A/T 85824295 missense_variant p.Leu63Phe
G/A 85824297 missense_variant p.Arg64Lys
T/C 85824329 missense_variant p.Ser75Pro
G/A 85824351 missense_variant p.Gly82Asp
C/T 85824361 synonymous_variant p.Gly85Gly
G/C 85824375 missense_variant p.Gly90Ala
C/T 85824391 synonymous_variant p.Asn95Asn
C/T 85824395 missense_variant p.Leu97Phe
C/T 85824403 synonymous_variant p.Pro99Pro
T/C 85824406 synonymous_variant p.Ala100Ala
C/T 85824410 missense_variant p.Pro102Ser
C/T 85824417 missense_variant p.Ser104Phe
C/T 85824436 synonymous_variant p.Ile110Ile
T/A 85824441 missense_variant p.Met112Lys
T/C,A 85824443 missense_variant p.Phe113Ile
T/C 85824444 missense_variant p.Phe113Ser
A/C 85824446 missense_variant p.Asn114His
G/C,* 85824451 synonymous_variant p.Pro115Pro
G/A 85824452 missense_variant p.Glu116Lys
A/T 85824454 missense_variant p.Glu116Asp
T/G,* 85824457 missense_variant p.Ser117Arg
T/A,* 85824458 missense_variant p.Tyr118Asn
G/A 85824466 synonymous_variant p.Gly120Gly
G/T 85824470 missense_variant p.Ala122Ser
C/T 85824471 missense_variant p.Ala122Val
C/G 85824473 missense_variant p.Gln123Glu
A/T 85824474 missense_variant p.Gln123Leu
A/T 85824510 downstream_gene_variant
A/T 85824517 downstream_gene_variant
T/C 85824540 downstream_gene_variant
T/A 85824542 downstream_gene_variant
C/T 85824550 downstream_gene_variant
C/A 85824703 downstream_gene_variant
G/T 85824720 downstream_gene_variant
T/C 85824756 synonymous_variant p.Asn129Asn
T/G 85824757 missense_variant p.Phe130Val
G/A 85824801 synonymous_variant p.Gly144Gly
G/A 85824814 missense_variant p.Glu149Lys
T/C 85824819 synonymous_variant p.Asp150Asp
C/G 85824820 missense_variant p.His151Asp
A/G 85824821 missense_variant p.His151Arg
T/G 85824822 missense_variant p.His151Gln
C/T 85824826 missense_variant p.Leu153Phe
T/C 85824842 missense_variant p.Phe158Ser
G/A 85824854 missense_variant p.Gly162Glu
C/T 85824859 missense_variant p.Leu164Phe
C/T 85824861 synonymous_variant p.Leu164Leu
G/C 85824862 missense_variant p.Asp165His
C/G 85824864 missense_variant p.Asp165Glu
G/A 85824866 missense_variant p.Cys166Tyr
A/G,* 85824877 missense_variant p.Lys170Glu
A/C 85824895 intron_variant
C/A 85824919 intron_variant
T/C 85824930 intron_variant
G/C 85824982 missense_variant p.Met175Ile
C/T 85824989 missense_variant p.Leu178Phe
C/G 85825017 missense_variant p.Ala187Gly
G/T 85825079 missense_variant p.Asp208Tyr
T/C 85825113 splice_donor_variant&intron_variant
C/A 85825114 splice_region_variant&intron_variant
C/T 85825118 splice_region_variant&intron_variant
T/C 85825120 intron_variant
G/A 85825130 intron_variant
G/A 85825133 intron_variant
T/A 85825148 intron_variant
A/G 85825151 intron_variant
C/T 85825169 intron_variant
A/C 85825205 intron_variant
C/G 85825225 intron_variant
G/A 85825319 intron_variant
C/G 85825333 intron_variant
G/A 85825343 intron_variant
T/C 85825390 intron_variant
C/T 85825411 intron_variant
G/A 85825429 splice_acceptor_variant&intron_variant
A/T 85825441 synonymous_variant p.Ala222Ala
C/A 85825460 missense_variant p.Leu229Ile
G/C 85825508 missense_variant p.Val245Leu
T/A 85825511 missense_variant p.Phe246Ile
C/G 85825513 missense_variant p.Phe246Leu
G/A 85825514 missense_variant p.Gly247Ser
G/C,* 85825544 missense_variant p.Val257Leu
T/C 85825548 missense_variant p.Met258Thr
G/C 85825551 missense_variant&splice_region_variant p.Arg259Thr
G/A 85825553 missense_variant&splice_region_variant p.Gly260Arg
A/G 85825573 intron_variant
G/A 85825580 intron_variant
G/A 85825597 intron_variant
T/A 85825601 intron_variant
C/G 85825608 intron_variant
A/T 85825622 intron_variant
G/A 85825629 intron_variant
C/T 85825635 intron_variant
T/C 85825649 intron_variant
C/T 85825662 intron_variant
C/T 85825705 intron_variant
G/A 85825721 intron_variant
A/G 85825729 intron_variant
G/T 85825745 intron_variant
A/G 85825747 intron_variant
G/T 85825764 intron_variant
T/C 85825776 intron_variant
G/C,A 85825792 intron_variant
G/T 85825796 intron_variant
T/C 85825802 intron_variant
C/T 85825807 intron_variant
C/G,* 85825813 intron_variant
T/C 85825823 intron_variant
A/G,C 85825824 intron_variant
T/C 85825827 intron_variant
G/C,* 85825832 intron_variant
G/A 85825839 intron_variant
G/A 85825846 intron_variant
G/A 85825847 intron_variant
G/A 85825855 intron_variant
G/C 85825856 intron_variant
A/C 85825861 intron_variant
G/A 85825872 intron_variant
C/T 85825888 intron_variant
A/G 85825899 intron_variant
C/G 85825917 intron_variant
A/T 85825926 intron_variant
T/A 85825931 intron_variant
G/T 85825948 intron_variant
A/G 85825950 intron_variant
C/G 85825998 intron_variant
T/A 85826038 missense_variant p.Phe263Ile
T/A 85826039 missense_variant p.Phe263Tyr
T/A 85826040 missense_variant p.Phe263Leu
C/G 85826073 synonymous_variant p.Val274Val
G/C,T 85826104 missense_variant p.Val285Leu
A/C 85826111 missense_variant p.Lys287Thr
A/C 85826122 missense_variant p.Thr291Pro
A/G 85826125 missense_variant p.Arg292Gly
A/T 85826135 missense_variant p.Lys295Met
C/T 85826169 synonymous_variant p.Ser306Ser
T/G 85826193 missense_variant p.Ile314Met
T/A 85826225 missense_variant p.Met325Lys
G/A 85826226 missense_variant p.Met325Ile
T/A 85826229 synonymous_variant p.Ala326Ala
T/C 85826277 synonymous_variant p.Pro342Pro
T/C 85826305 missense_variant p.Phe352Leu
G/A 85826401 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05753.1
MGLCFSGSPDIHGSNVVVPGTNTTTEIGKSQFSMIETIYSDYSPLPFADGQILKWPELKVFSLRELKSATGNFKSDRLVGEGGFGRVYKGWLDENTLIPAKPGSGVEVAIKMFNPESYQGFAQWQSEVNFLGRLSHPNVIRLLGYCWDEDHFLLVYEFMPNGSLDCHLFKTNHSMEPLSWNTRLKIAKGAARGLAFLHATENKVIFRDFKPSNILLDENYDAKLSDFGLAKLGPSEGQSHVTTKVFGTYGYAAPEYVMRGQLFVKSDVYGFGVVLLEILTGMRAVDKRRPTRQQKLVEWTKPCLSSEKKLNSIIDCRIKGQISPMAALESAQLIMKCLEHDPEQRPSMKEVFEGLEAIEDNH*


CDS Sequence:
>Vu_05753.1
ATGGGTCTCTGTTTCTCCGGTTCACCAGACATTCACGGCAGCAACGTCGTGGTCCCCGGAACCAACACCACCACCGAGATCGGAAAGAGTCAGTTTTCCATGATAGAAACCATCTACAGCGATTACTCTCCTCTTCCTTTTGCCGATGGCCAAATTCTGAAATGGCCCGAGTTGAAGGTCTTCAGTTTAAGGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCATCCCCGCTAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTATCAAGGGTTTGCACAGTGGCAGTCTGAGGTAAATTTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATCATTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGACTGTCATCTCTTCAAAACAAATCATAGCATGGAGCCACTTTCTTGGAACACCCGGCTTAAAATAGCTAAGGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCACGGAAAATAAAGTCATATTCAGAGATTTCAAGCCCTCAAATATACTTCTCGACGAGAATTACGATGCAAAATTATCAGATTTTGGCCTAGCTAAATTGGGACCATCTGAGGGACAATCACATGTAACTACCAAGGTCTTCGGCACCTATGGTTATGCTGCTCCAGAATATGTTATGAGAGGGCAGTTGTTTGTGAAGAGTGATGTGTATGGATTTGGTGTGGTCCTTCTTGAAATACTTACAGGCATGAGGGCAGTTGACAAAAGAAGGCCAACGAGGCAGCAGAAGCTGGTTGAATGGACAAAACCTTGTCTCTCTTCCGAAAAGAAGTTGAATAGCATAATTGATTGTAGGATAAAGGGTCAAATATCACCCATGGCTGCATTAGAATCAGCACAACTTATTATGAAATGCCTAGAGCATGACCCTGAACAACGTCCTTCAATGAAAGAAGTTTTTGAGGGATTGGAAGCCATTGAAGATAACCATTGA


Promoter Sequence:
>Vu_05753::LG1:85821914-85823914(+)
TTTTTTAAAAGCATAAAAACTCATGCATTAAAAAAAAGAAATTTAATATAAAAGCAATAATAACTTACAGACTTAATAGCTTTGAAGTATGTTAAATTAGTTTCATCCTTTAAAAAAGAAAATATCAATTGTGTTCCCACATGATAAAATTTGTATAAATGAAGTCTCTTCAGTTAAATGTTAAATACGTGTCTAAAATTTATTTTTTCTCTTTTCTACTTTTATGTGCAACATAGGTTTTTGTCAATATTTTCTCCTCTATCCTATGTGCCTACGAATAAAGTGATACAAAATAAGTATTATTCTTTTTACAATTTTGGAAGTTTCAACAAATCATTTTGAAGCATCATCAATACCTGATAAACCGTAGCTCTTGAGATTGAACTTTAGATAATTCATGTGTGCACCCACTAAATGCAAGCATGTTCTTCTCATAACCTAAATGCAATGCAATATAGGGACCGAATGACCTCATCCTCTCCACCAATGTCTGAAAGGATCCGAAAGGTATTTGGAAATGAAAAAGAAAATCCTGACAAAGCAATCAAAGAAACTAACTAGACTTAAATATCAAATTATATACTTTTCCCATTTTTTCAATACGAGGAGAGAAACGAAGAGCTTCATAACAAGCACGGTGATAGTTCAGAGGATGTATTTACAGAATGCAGAGAAAGGTGTAAAAGCACTCAGAGAATGAAAGAGGGAGAGCACAAGAATATGAGAGAATGAGTTAATTCTCATTAAGGAAATACTGCCTTATATAGGCAGAGTACAGAAAAGTATATATCTAAAACGACATAGTTTTGGTTTATTTACAACACTTCCCCTTAAACCAAACTATTTAAGCTTCTAATGCCAATCAAATTTCTCAGTTTTTCAAATCTTCCTCGTCTCAAAGCTTTGGTAAAGATGTCCGCAGCTTGCTCTTCAGTAGGACAGAACACCAACTCCAACTTCCCTTGGTTGACACGTTCTCTTAGGTAATGAAATTTCGTTTCTATGTGTTTGCTTCTGCCATGTGATACTGGGTTTCTTGAAAGACTAATAGCTGACTTGTTATCTACCAAGCACCACTTGTTACTTCATTTGATTTTAAAACTGAGTTGGTTACCACTACAACTTGTGTTAGTCAAGTCATATATGATTGAAAAGGGTCAATAGAGAATTACAATTCAAGAAAATAAATGTTACTATAATTTTATTTTGTAACAATAACTCAACAATCAAATTGTAAAAAATTTCAACTCTATATATAAAATAAATATGAATATTTATGTGAACTTGTGTATCTTAAAATATTTTTACAAATTGGTGTTGATTTAATTCATCACTAGAATAAAGATGAAGTAGCAGTCGTTCTTGAACTAGAAATAGTTGTTTGATTTTAAAATGAACTAGTATACAGTAATGTAAGGAAAAGATGTTAGAAAATAGAAAAAAATATTGAATTTATTAAATTTAGTAGATAGACATATTGATTCTTTATAATATTTAAATTTTTTTAATGTATTTTAGGTTATATTATTCTTAATGAAATAAAAAAGAAGAGCTACGGTTTTCCTTAAGTATTAAATTTGATAATTTATTATTTCTTAAACTACTAAGCTTTCAATGACATATGTATTTGCTTTAAAAAAAGGCAACTTGTGTATCAATCCAGAAGCAATGCACTAAAAATCAATTCGTCAAGAATTCGTATCTTCATCCTCTGGAATTTAAATATAAATGGAAAAATTATTGTTAAAATATTGTTGTAGCTTTCCGAACTGTTGCAGAAGATTACTCACTCATACTAGGACAAATCCTGGTTTACATAATTGGGCAAGCGACTGTGATAATAATACTGAGTTTAAATAATTATTATTATTATTTAAACTAAATTATCATTCAGAAGATTATCATAATACTAAGAATGCGAAATTATTGTTTAATCTAAAACTATTTGGGATGGACAGCTTCAAATTTAAGTGCTGGCAATCCAAGACACAGTCTGGTTA


Gene Sequence:
>Vu_05753(+)
AACCAAGTGACGGCCAAAACCAGAGGTTCCTGATTGGCGCAAGATGGGTCTCTGTTTCTCCGGTGCTCCATCACTCCATTCCTCTTCACTCAACCGCCCTCACTATAATATCTGTGCCCTTTCTAAACTCATCCCAAAACAGGAAATGGGTTCTTCCTTCTTTTCCTCCGATTTGAATTTTCCCATGACGGGTTCGTTTCCTCTGTTTTCAGGTTCACCAGACATTCACGGCAGCAACGTCGTGGTCCCCGGAACCAACACCACCACCGAGATCGGAAAGAGTCAGTTTTCCATGATAGAAACCATCTACAGCGATTACTCTCCTCTTCCTTTTGCCGATGGCCAAATTCTGAAATGGCCCGAGTTGAAGGTCTTCAGTTTAAGGGAGCTGAAATCTGCCACAGGGAATTTTAAATCCGACAGATTGGTCGGTGAAGGTGGGTTTGGCAGAGTTTACAAGGGATGGTTGGATGAGAACACCCTCATCCCCGCTAAACCAGGCTCTGGAGTTGAAGTTGCCATCAAAATGTTCAACCCGGAAAGTTATCAAGGGTTTGCACAGTGGCAGGTCGCTTTATTTTCATCTCTTTCATTTAATTTTTTAAACTTTGACTTTAAATTTTTAATGTACTGAAACACTTCCGCCCTTAGATTAAAGTAATTGCTATCATGTTATGCATCTTAGCAATTGAATTCAAACTTTTCTTTACAATGTGGTAAAGTTAGATGAACTTGTCCTTTTCTATCGTGTTATGATTTTACTTGTCATATTGCATTTAATTTTCGTGCCATAAATCCAACGTCTTGAACAACTTTTGTTGGAAGATGCAGTCTGAGGTAAATTTTTTAGGAAGGCTTTCTCACCCCAACGTGATCAGGTTATTGGGGTACTGTTGGGACGAGGATCATTTTCTTCTTGTGTATGAGTTCATGCCAAACGGAAGCCTCGACTGTCATCTCTTCAAAAGTATGAACTGATGAAAATTAAAACAGATTGAAGGAAACCACTCTTGACTTTGAGTTTAATTCTTATTATTTGTCTTTTTTCTGATCAGCAAATCATAGCATGGAGCCACTTTCTTGGAACACCCGGCTTAAAATAGCTAAGGGTGCAGCTCGGGGATTAGCTTTCTTGCACGCCACGGAAAATAAAGTCATATTCAGAGATTTCAAGCCCTCAAATATACTTCTCGACGAGGTCAGTCATTTTTTGTTCGTTGATTTTCGCATGTCCTATACTTATTGGAAGCCAAAGCAAATACAGTATGAAATTTTGATGAATTGACAGTTAAAAATTTGGACCCCATCAATCATTTTACAAGCCTAACTCAATTTGAGATAGTTTAACTCCGTCTGTTATAACACAACCTGAAAATTCAATATCTTGATTATCTTTCTCAGTGCTGTCAATACTATAGACCTGGTGACTGGTTAAAGAATATTACATGATGTTATGAGTGCGTAATACTTTTAAATTTGAGTGATAAATTCCTCATACAATTGTGATAACGTACAGAATTACGATGCAAAATTATCAGATTTTGGCCTAGCTAAATTGGGACCATCTGAGGGACAATCACATGTAACTACCAAGGTCTTCGGCACCTATGGTTATGCTGCTCCAGAATATGTTATGAGAGGTAACTATATATCTGGTTTATTTGGTGTGAGGAAGTATTATTTGTTTTATTTTACATTTTCACATGCAATTACTTGAATGACACCTGACTTGTTTTGTGAAAATAAGCCAAAGACAAAATAACAGCAGAGAAAGTTTACTTAAAAGAAAGACCTTAATGTTATAGTAGTAGTAAAACAATGAATGTTTTGTGGAAGATGAAGTTGGGAAGGTAGACTAAAAATAAGGAATAACGAAGTGTAAGAATAATGATACCATGACACACTTTTATATTTATTTGATACAGGTTATAAGGATAAAATGGTAAAAAAAAAAATGTGTAAATTTTTGTTTTGCTTTAAAAAAAAAGAATAAAAAGTAAGTACTGTCAAATAAATCTAAAATATTTAGATGTGGCAAAGAAATCTTTACCGGAAGTCTAATGCTTTGAGCCACCACAGACTGACATGTGTTTTGGATTGTATAAATATTTGACAGGGCAGTTGTTTGTGAAGAGTGATGTGTATGGATTTGGTGTGGTCCTTCTTGAAATACTTACAGGCATGAGGGCAGTTGACAAAAGAAGGCCAACGAGGCAGCAGAAGCTGGTTGAATGGACAAAACCTTGTCTCTCTTCCGAAAAGAAGTTGAATAGCATAATTGATTGTAGGATAAAGGGTCAAATATCACCCATGGCTGCATTAGAATCAGCACAACTTATTATGAAATGCCTAGAGCATGACCCTGAACAACGTCCTTCAATGAAAGAAGTTTTTGAGGGATTGGAAGCCATTGAAGATAACCATTGAAGATAACCCAACTTATATTTGTAATTTTTTGTGTTTCTTAATTTTTTCTAAATTGGTTTCGAGTTT