Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05751 LG1 85801581 85804436 "PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic "
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 85801591 missense_variant p.Phe4Ser
A/C 85801606 splice_region_variant&intron_variant
C/G 85801607 splice_region_variant&intron_variant
C/A 85801619 downstream_gene_variant
T/C 85801624 downstream_gene_variant
A/G 85801625 downstream_gene_variant
T/C 85801632 downstream_gene_variant
C/T 85801697 downstream_gene_variant
G/C 85801707 downstream_gene_variant
C/G 85801742 downstream_gene_variant
A/T 85801759 stop_gained p.Arg9*
C/T 85801766 missense_variant p.Ser11Leu
T/C 85801773 synonymous_variant p.Val13Val
A/T 85801787 missense_variant p.His18Leu
C/T 85801788 synonymous_variant p.His18His
A/C 85801794 missense_variant p.Gln20His
G/C 85801803 missense_variant p.Gln23His
G/A 85801805 missense_variant p.Arg24Lys
G/T 85801807 stop_gained p.Glu25*
C/T 85801818 synonymous_variant p.Phe28Phe
G/T 85801836 synonymous_variant p.Arg34Arg
A/C 85801850 missense_variant p.Tyr39Ser
T/C 85801908 synonymous_variant p.Val58Val
A/T 85801917 stop_lost p.Ter61Tyrext*?
T/G 85801918 stop_lost p.Ter62Glyext*?
G/C 85801952 missense_variant p.Arg73Pro
G/C 85801961 missense_variant p.Gly76Ala
C/G 85801963 missense_variant p.Arg77Gly
C/A 85802056 missense_variant p.Gln108Lys
A/G 85802072 missense_variant p.Glu113Gly
G/A 85802075 missense_variant p.Gly114Glu
T/G 85802080 missense_variant p.Ser116Ala
C/G 85802093 missense_variant p.Thr120Arg
G/C 85802115 intron_variant
A/T 85802116 intron_variant
T/A 85802119 intron_variant
G/C 85802124 intron_variant
A/G 85802153 intron_variant
T/C 85802155 intron_variant
A/G 85802184 intron_variant
T/G 85802188 intron_variant
A/T 85802240 intron_variant
T/C 85802267 intron_variant
C/A 85802301 intron_variant
G/A 85802309 intron_variant
T/C 85802319 intron_variant
G/A 85802334 intron_variant
T/G 85802341 intron_variant
A/G 85802364 intron_variant
C/T 85802375 intron_variant
T/A 85802383 intron_variant
T/C 85802392 intron_variant
A/G 85802407 intron_variant
A/G 85802427 intron_variant
A/G 85802431 intron_variant
T/C 85802444 intron_variant
A/C 85802454 intron_variant
A/C 85802470 intron_variant
A/G 85802514 intron_variant
G/A 85802528 intron_variant
G/A 85802543 intron_variant
G/A 85802546 intron_variant
T/C 85802577 intron_variant
G/A 85802584 intron_variant
C/T 85802587 intron_variant
A/T 85802599 intron_variant
G/C 85802713 intron_variant
T/G 85802717 intron_variant
G/A 85802729 intron_variant
A/G 85802754 intron_variant
G/C 85802758 intron_variant
C/T 85802762 intron_variant
G/T 85802796 intron_variant
A/G 85802815 intron_variant
C/A 85802876 intron_variant
A/T 85802881 intron_variant
A/T 85802928 intron_variant
C/T 85802974 intron_variant
C/A 85803022 missense_variant p.Ala124Glu
G/C 85803040 missense_variant p.Arg130Thr
C/G 85803047 synonymous_variant p.Ser132Ser
A/G 85803055 missense_variant p.Asn135Ser
T/G 85803097 missense_variant p.Leu149Arg
C/G 85803107 synonymous_variant p.Val152Val
A/T 85803109 missense_variant p.Tyr153Phe
C/T 85803122 synonymous_variant p.Pro157Pro
G/T 85803127 missense_variant p.Gly159Val
G/C 85803130 missense_variant p.Ser160Thr
G/C 85803134 missense_variant p.Leu161Phe
G/A 85803160 splice_region_variant&intron_variant
T/C 85803227 intron_variant
C/A 85803272 missense_variant p.Ala180Asp
T/C 85803279 synonymous_variant p.Asn182Asn
C/T 85803282 synonymous_variant p.Ser183Ser
C/G 85803306 missense_variant p.Cys191Trp
C/T 85803316 missense_variant p.His195Tyr
T/C 85803318 synonymous_variant p.His195His
G/A 85803323 missense_variant p.Gly197Glu
A/G 85803332 missense_variant p.Asn200Ser
C/T 85803338 missense_variant p.Thr202Ile
C/T 85803340 stop_gained p.Gln203*
C/T 85803349 stop_gained p.Gln206*
G/A 85803353 missense_variant p.Gly207Asp
C/T 85803835 intron_variant
A/T 85803846 intron_variant
C/G 85803880 intron_variant
C/G 85803883 intron_variant
T/C 85803924 intron_variant
A/T 85804033 intron_variant
A/G 85804047 intron_variant
T/A 85804054 intron_variant
C/G 85804130 missense_variant&splice_region_variant p.Leu256Val
C/A 85804135 synonymous_variant p.Val257Val
T/A 85804143 missense_variant p.Val260Glu
G/C 85804169 missense_variant p.Ala269Pro
A/G 85804206 missense_variant p.Gln281Arg
A/C 85804207 missense_variant p.Gln281His
A/G 85804239 stop_retained_variant p.Ter292Ter
A/T 85804270 missense_variant p.Lys302Asn
C/G 85804289 missense_variant p.Arg309Gly
G/A 85804293 stop_gained p.Trp310*
G/A 85804328 missense_variant p.Val322Ile
T/C 85804330 synonymous_variant p.Val322Val
G/T 85804364 missense_variant p.Gly334Trp
G/C 85804365 missense_variant p.Gly334Ala
G/A 85804366 synonymous_variant p.Gly334Gly
T/C 85804370 missense_variant p.Ser336Pro
C/A,G 85804374 stop_gained p.Ser337*
C/G 85804401 missense_variant p.Ser346Cys
G/A 85804425 missense_variant p.Arg354Lys
A/T 85804429 stop_lost p.Ter355Tyrext*?
G/C 85804435 missense_variant&splice_region_variant p.Leu357Phe

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05751.1
MGLFFSCSSDIHKFSETTTANTIRGSQFSVRESIGSNCSTRPLPFPARQVLKWPELKVFSFNELKSVTRNFSSDRLVGEGGFGRVYKGWLDKNTLTPAKPGSGVVVAIKKLNPKGFQGFRQWQSAVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHMSEKQIIHRDFKASNILLHDIFNAKIADFGFAKELPGEDSHVITRTMGTRGYIAPEYALMGHLSVKCDVYGFGVVLLEILTGMRALDKRRPTGQQNLVKWSKPCLSSEKKLKTIIDGKIEGQYSPKAALQAAQLALKCLEGDPHQRPSMEEVLEGLEAIEDNH*


CDS Sequence:
>Vu_05751.1
ATGGGTCTCTTCTTCTCCTGTTCATCAGACATTCACAAGTTCTCCGAAACCACCACAGCCAACACGATCAGAGGGAGTCAGTTTTCCGTGAGAGAAAGCATCGGCAGCAACTGCTCTACTCGTCCTCTTCCTTTTCCCGCTCGCCAAGTTCTGAAATGGCCTGAGTTGAAAGTGTTCAGTTTTAATGAGCTGAAATCTGTCACAAGGAATTTCAGCTCCGACAGATTGGTCGGTGAAGGTGGATTTGGCAGAGTTTACAAGGGATGGTTGGATAAGAACACCCTCACTCCCGCCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAAAGTTAAACCCGAAGGGTTTTCAAGGGTTTCGACAGTGGCAGTCAGCAGTGAATTTTTTGGGAAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTCTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGCATTCCTGCACATGTCGGAAAAACAAATTATACACAGAGATTTCAAGGCCTCAAATATACTCCTACATGATATATTCAATGCAAAAATAGCAGACTTTGGGTTTGCTAAAGAGCTTCCTGGGGAAGATTCACATGTAATTACCAGGACCATGGGCACCCGTGGTTACATTGCACCAGAATATGCCTTAATGGGGCACTTGTCTGTGAAGTGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACAAAAGAAGGCCAACGGGGCAGCAGAACCTGGTTAAATGGAGCAAGCCCTGTCTCTCTTCCGAAAAAAAGTTGAAAACAATTATCGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCGTTACAAGCAGCACAACTTGCTCTAAAATGCCTAGAGGGTGATCCTCATCAACGTCCTTCAATGGAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAGATAACCATTGA


Promoter Sequence:
>Vu_05751::LG1:85799581-85801581(+)
CACATATTTTTTAAAATTTTCAAATATATTTTAAATATATTTCATATATATGGTTAACTGCCTAATGTATCTTCTTGTAATAGACATAATGTATTCTGAGTTTAATTAGTAGGAACATGAAAATTCCTTTTAAGTCACATTTATTGATTACCGAAAGAAAATTTCACTATTTGTAAATAGCTCATAACTTTGAAGTATATTATTAAAAAAGGAAAAAAATATGATTGAATTGAATTTAGCGAGAATAATTGTAGCATCATGATTTAGGAGCACCTACAGATATCGATCCGGACAATTTGGAACTATATAGAAAATTATCCAGTTCCAACCATTTACAAACGTTAGAAACCCTTCAATTAGAGTTTGGATGAAGTAAGACTTAATACATTAGGCCTATTATAAAACCTAAGCGTTAGTTTAGAATAAAACTAATTATTACAATCCTACTATCATAAAATCGGTATGGGATCCATTGCGATAAATTAAACAAATTCCCCAGAATCTTGGATATATTAGAAAAGATAATTTTGTTGTTACTAAAATAACTTAAATAGGAAAAATTGATAAAAATTAGTTTTCTGGTACGATAGTTGTTCCTCAATCATACTAGTTAAACTCTTTGGCTTAAAGTCATCATAACTTTGAACAGAACAATAATTATGCAAGTGATCACACTTGATTTTGTCTTTTATTCTTGGAAGATATGTCTTTTCAAAAGCATTCTGTTGTTACTTTATATAGTTCTAAAGCTATGTTTTTTGTAATTATAATTTGTACTTGTCAAACTATATGGTTGTGGAATTTTTTTCAAGAACTACAATTTAAACAAATAAAGGTTAGGCTTAATATCCTATTTTGTTCTCAGTTTTGCTCGAAAATGTCAAATTAGTCCATCCTTTAGAAAGTGCGTCAATTACGTCCTTACTTAATAAATTTTGTATCAATGAAATCCCTTCCGTTAAATCCGTACAAACGATATTAACTATTTTTCTCTCCTACTTAATAAAATAGTTAACGCCGTTTGTACGGATTTAACGGAAGGGATTTCATTGATGCAAATTTTATTAAGTGAGGACGTAATTGACATACTTTTTAAAGGATGAACTAATTTAACATTTTCGAGCGAAACTGGAGAGTATTAAGCCTAAAGGTTATTATGATATTTTGTAACAATAATTCAACAACCAAAATGAAAACATTTAATTCTACATAGAATAAGCAAGCATTTGGACCCCATCATTTATTTTACAACCAAATTATGAAATGCAGTATGAAATTGTGATGAATGGGCAGTTACGAATTTGGACCCCCAATATTTATTTTACAAGCCGAACACAATTTGAGATCCATCTGTTAACATATAACATGAAAAATGTAATATCTTGATTCTCATTGTCTCTTTCTTAGTGCTGTCAATGCTATAGACCAGGTGACTAGTTGAATGAAAGTTGATAACATATAAATGGTAATGGAACTAGGACAAACATAATGTGTGTTGTAAGTTTGATTAAAAGATGCATGAGAAATCTTCTTAAATTATATTTATTAACTACCAAAAGAATTTTTTGTTGGGATTCATAACTTAAAAAGCCTATATATGTTATTTGATTGAATTTACAGATTAAGCAAATAATATATACCATAGAAAAAATATATCTGATTTTGTCTTTATCCATGGATCGGTGTTTCATGGTTTTCCAAAAAAGACAACCTTATTACTTTATCTGGTATTAAAGGTGACTTTGTTGCGGGTATAACCTGTGTTTATCAAGGTATATGATTCACTAATGTTTTTGAAGAAGATTGCTTATACTTGACAATTCTTGATTTGCATTGAAGCTAATGCGATAATTCTATAAAACCGAAGTTATTATCTAAAAACAATACAACAGAAATAAACTGCTTCGAATTTAAGTGCCGGCAATCCAAAAATTGAGTTTAGTGGGCAATCTGGTTGACTCAGTGACGACCAATTACAGAGGTTTAAGACTGCCATAACA


Gene Sequence:
>Vu_05751(+)
ATGGGTCTCTTCTTCTCCTGTGCTCACTCACTTCGTCACTCTTTACTCAACTGCCACCACTTTTCAGGCAATTTATCAAATTTTCCGTTCCTTTCTAAATTTATGCCAAACGTTCCCTTTTTCCTCGAATTCAAATTTTTCACACGAGGGGTTCGGTTCCTCTGTTTTCAGGTTCATCAGACATTCACAAGTTCTCCGAAACCACCACAGCCAACACGATCAGAGGGAGTCAGTTTTCCGTGAGAGAAAGCATCGGCAGCAACTGCTCTACTCGTCCTCTTCCTTTTCCCGCTCGCCAAGTTCTGAAATGGCCTGAGTTGAAAGTGTTCAGTTTTAATGAGCTGAAATCTGTCACAAGGAATTTCAGCTCCGACAGATTGGTCGGTGAAGGTGGATTTGGCAGAGTTTACAAGGGATGGTTGGATAAGAACACCCTCACTCCCGCCAAACCAGGCTCTGGAGTGGTAGTTGCCATCAAAAAGTTAAACCCGAAGGGTTTTCAAGGGTTTCGACAGTGGCAGGTCGCATTATTTTGATCTCTTTGAATTACATTTTTTAAACTTTGACTTTAAATTTTTAATGAACTGAAACACTTCCACCCTTAGATTAAAGTAATTGCTAACATGTTATGCATGTCAGCAATTGAATACAAACTTTTCATTACAATGCTGGTAAAGTTAAATGAATTTGTGCTGTTCCAGAGGACCTGACAAAACATAACTGGCTAAGTGCTTATCATTCTATCATGTTGAAGTTTTACTTGTTATATTGTATTTAATCTCCAATCATAAATCCTGCGTCTTGAACAACTTGAGTGGCTATTTAAACATGATTTTGTGTTGGTTGAAAAATGGAGTCTGAGATAAACGTTTTAGGAAGGCTTTCTCACACCAACGTGGTCAGGTTATTGGGGTACTGTTGGGACGAGGATCAATGCTAATGAATCTGAAATACACTCCGGAGGTGCTTAGAGTAACATTACCTAATAAATGATGCTGGTGTTGTTCATAGGAAATGAATTCTTTAATAATAATATATATGGGGTCTGAGATCTCTTAAGGGCAATATGATTGTATTTGGATCTCGTCTTAGAATTCTTAATCTTAGACAGTTGATCTGTAATCCAGCGTCTGGATTGAGCTTAATCCGTTATGTGATTGGGCCTTGAACTGCATCTGGAGCAAAGATGCATTATAGAAAATGAAAACTTTTCTAGACAAGGACGGTAAAATTAAGTCAACTTTTTCTTTTCTAAAGGAAGTGCTAAATCTTAACAAGACATTCCTAAATGTTTTCATTCAACCATGTTGGTATTTCAGTTGTCTATTGCATTTAAGATTATAGTGTAAGCATCAACAAATCAGGGTACCTTCCTGTGATAAATTCATTTTAGCTCTCTGATTATCTAAATGTTTTTCTGTTAATTTGAAAATGCAGTCAGCAGTGAATTTTTTGGGAAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTCTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGTATGAGTTGAACATTAATAAAATAGTGAAAGAAAGTGAATTTGAGTTTAACAATTTTGCTTTGTCTTGTTCCTGAGCAGGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGCATTCCTGCACATGTCGGAAAAACAAATTATACACAGAGATTTCAAGGCCTCAAATATACTCCTACATGATGTTAGTAACCTTTTTGTTAATTGCTTTTATTACGTTGTTTATTAGTCTATCTTTTCCACTATTTTTAGAAATGGAAGCTAAAACATTTGTCGTGTCTTATTGAGATGAACACAGATTTTATAATTTAGATCCCATTCTTAGTTTTACCACGGGTTTGTTCATAACTAATTGGTCAAGTATAAGAGCCAAGTACATGGAGCGAGTAACCTAACATGCATCATATTTCTGAAGTAAGAAAATTATATTTATTTGATGCTAAATTCTTCATATAATTTTTATAACCATTATTTTCTATCTTACAGATATTCAATGCAAAAATAGCAGACTTTGGGTTTGCTAAAGAGCTTCCTGGGGAAGATTCACATGTAATTACCAGGACCATGGGCACCCGTGGTTACATTGCACCAGAATATGCCTTAATGGGTAACTATATCTGGTTTATTTGATATGAGGAAGTACTATTTGTTTTAATTTCACATATTCACAAGTAATTACTTAAATGACACCTGACTTCTTGATTTCAAAGAAACTTAACATGGAAAAAAGGTATTGTCTTGTGAAAATAAGTCAAAGACAAGAAACCAGAAAGTTTCCTTTAAACAAACAGACCTTAATGTAGTAATAGTAAGTAATGAATGTTTTGTGGAAGATGAAGTAGGGAAGGTAGACTAAAAATATGGAATAATGAAGTCTAATGCTTTGAGCCACCACCGACTGACATGTGTTTAGATTGTATAAATATTTGACAGGGCACTTGTCTGTGAAGTGTGATGTGTATGGATTTGGTGTGGTGCTTCTTGAAATACTTACAGGCATGAGGGCACTTGACAAAAGAAGGCCAACGGGGCAGCAGAACCTGGTTAAATGGAGCAAGCCCTGTCTCTCTTCCGAAAAAAAGTTGAAAACAATTATCGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCGTTACAAGCAGCACAACTTGCTCTAAAATGCCTAGAGGGTGATCCTCATCAACGTCCTTCAATGGAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAGATAACCATTGA