Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05743 LG1 85657355 85661473 PREDICTED: SRSF protein kinase 2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   spliceosomal complex assembly, regulation of mRNA processing, protein phosphorylation, regulation of mRNA processing, spliceosomal complex assembly, phosphorylation, spliceosomal complex assembly, phosphorylation, intracellular signal transduction, protein phosphorylation, protein phosphorylation, regulation of mRNA processing, spliceosomal complex assembly
Cellular Component   is active in   nucleus, cytoplasm
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein serine/threonine kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
A/C 85657618 missense_variant p.Asn434Lys
A/T 85657744 synonymous_variant p.Leu392Leu
T/C 85657880 missense_variant p.Lys347Arg
G/T 85657883 missense_variant p.Ser346Tyr
T/A 85658145 intron_variant
T/C 85658201 intron_variant
T/A 85658216 intron_variant
T/C 85658242 intron_variant
C/T 85658320 intron_variant
A/G 85658325 intron_variant
T/A 85658378 intron_variant
A/T 85658382 intron_variant
G/T 85658383 intron_variant
C/A 85658523 synonymous_variant p.Thr311Thr
C/A 85658716 missense_variant p.Gly247Val
A/C 85658733 synonymous_variant p.Ser241Ser
A/G 85658749 missense_variant p.Ile236Thr
T/A 85658766 synonymous_variant p.Thr230Thr
C/T 85658774 missense_variant p.Gly228Arg
T/C 85658814 synonymous_variant p.Lys214Lys
A/T 85658967 missense_variant p.His163Gln
T/C 85659412 intron_variant
T/G 85659413 intron_variant
C/T 85659424 intron_variant
A/G 85659474 intron_variant
G/A 85659521 intron_variant
C/A 85659625 intron_variant
A/C 85659638 intron_variant
A/G 85659655 intron_variant
G/A 85659728 intron_variant
A/G 85659849 intron_variant
C/T 85659857 intron_variant
C/A 85659986 intron_variant
A/G 85660003 intron_variant
C/T 85660280 intron_variant
C/A 85660320 intron_variant
A/G 85660358 intron_variant
T/C 85660360 intron_variant
C/T 85660397 intron_variant
G/A 85660408 intron_variant
C/A 85660551 intron_variant
C/T 85660650 intron_variant
A/G 85660672 intron_variant
T/C 85660676 intron_variant
T/C 85660709 intron_variant
A/G 85660744 intron_variant
G/T 85660813 intron_variant
A/G 85660855 intron_variant
A/C 85660905 intron_variant
C/T 85661126 missense_variant p.Gly15Glu
G/C 85661357 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05743.1
MSCSSSSGSEEDDEGFDSYRKGGYHAVRVGDQFAGGRYIAQRKLGWGQFSTVWLAYDTSTSAYVALKIQKSAAQFVQAALHEIDVLASISDGVDVNSKCVVQLIDHFKHAGPNGQHLCMVIEFLGDSLLRLIKYNRYKGLPLNKVREICHCILIGLDYLHREHGIIHTDLKPENVLLISTIDPAKDPVKSEVSPILERPEGSINGGVTSLIEKKLKRRARRAVAKIAGRTASIGGIEDQKSVRNLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILQAGYSFSVDMWSFACIAFELATGDMLFTPKVGQGFSEDEDHLALMMELLGKMPRKVATAGAKSKDFFDRHGDLKRIRRLKFWPLSKLLVDRYKFPQSDAHEFSEFLLPLLDFVPEKRPTAQQCLQHPWLRGTESNEKKESSVENVGVGMSNLKIKGAK*


CDS Sequence:
>Vu_05743.1
ATGTCGTGTTCTTCTTCATCCGGGTCTGAAGAGGACGATGAGGGGTTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGCCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGCATATGTTGCTCTTAAGATCCAGAAAAGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGTGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGCCAGCACCTTTGCATGGTGATTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCCATTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATCTCTACCATTGATCCTGCCAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTAGAGAGGCCAGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCGCTGGAAGAACAGCTTCAATTGGAGGAATAGAAGATCAAAAGTCTGTGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGAATTCGAAGACTAAAGTTTTGGCCCCTTAGCAAATTGTTGGTTGATAGATACAAATTTCCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTCGATTTCGTCCCAGAGAAGCGACCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAAGGAATCCAGTGTGGAGAATGTGGGTGTTGGGATGAGCAATCTCAAAATCAAGGGGGCAAAGTGA


Promoter Sequence:
>Vu_05743::LG1:85661473-85663473(-)
AAGGTACTCCGACGCCCAAGTTAGGCGTGTGATTTGAAGAGCCTCGGCTCTTGGTTGAATATTTAGTGAATGATTATCACTCTTGAGTATTTGAGAGTCATGTAGAGTAAGTGGAACGTACCTCGCTCTTGGCCCTAGCTTTGTATTTATTATTTTCCTCATGGATCTTGAGCTAATATAAGCCCAATAAAATATAAACAGAATAAGATATAAACAGATTACCTAAATATCCGGTTGGTTGTTTGTAACCGCTCGGTTAATATTTCATACTATACAATAATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATAGTATATGGATAAAGTATCATTAACTGGTAGTAGTTTGTTTCAACACTGGTTTGAGCTTCAATCGTAAAAGGGAGAACAAATAAAAAAAAAGTAGATAAGAATGTTTCTCTAATTTATTTGAATCTTAATATATTTCATAGTTTAAAATTCATTACCAATAGGAAATAAAAAATTATTGAATATTTTAAAATGTAAATATTAAAAAATATTTGTAAGACTTATAAAATAATTTATTCTTTAAGAATAACTTACATCTGATTAAGTACATAAATTTCTATTTTATGTATAGTATTCATTTACTATTACATCATCGTCGTCATTATTATTACAATTATTGTTATTATCATCATTAATTATTATTATTATTATTTACTATTATTTATTATTATTATTACTATTATTATTACATTGCAATTTTTATATATATCTATGCCATTAGCCATCTTTTTCTCACTTGTTGTACAAAAATATTCTACTAATTTATCATGCAAATGCAGTTTCTCTTTAAAGTTAACAACAGAGTTGTCTTAAGTTGCTTGAACAAATTAAATGCATAGATTCTTTGGCTATAATGATCTCATGTCCCTTAAAAAATCAAGTGGATGTTACTACTTTGAAGATAGATTCTTTTCTAAAATTATATCCATACTCAAGTTTTAACCTAAAGCCATTAATTGCCAAACACGGCAAAGTCACTCAAGACTTAAAGCAGGTCATTCTGTAGCTTTTAAAACTACCTTTAAGATTTGCAAGTTTAGCAATGTCACATATCTACTGCACTTGCAAATACTCGGAACACGCTTTACTTATTTTTTTTATATCTAATTAAAGTAATAGTTATTACAATAAAAAAATAAATATCAAAACAAGAATTAATAACAATAACATTTATAAAGAATAGTTAATAACAGACTTTAGCTTTAGTAACTTTCCTTCACACGTTTTACTATTTCAAGTTTTGGTATGGTCTTATCTTGTAACTCTTTTATTCATTAACCAATTTCTTTCTTCATAATCGATCAGAAATTATCGACAATAATTGTTTCTACTTTTATACTTGTTTTAATAATTAAACGTTTTTAACTGTATTTTTTATTATAAAAAAATATAAACAGTAAATAAATTGTACTGAATTAGATCGTACACTCTTCTAATTATGGCATATTGTGAAAAACTTGTTACACACTCCAACGTATGAGTGAATGAAAACATGAAAAGAAAAAGGTACACATAGTATTTGGCTTTAATTATCCTTTAAGATGAGTAGCCTTGATAAGGCAAAGGTGTGACGAAGTAAGAAGAGAAAATGGGTGGTATAATGTTGAATTTGCAGAGGCTATAAAAGAAGGTGTTGAAGAAGAAGCAGTAGCACATGGTGAAAAACAAGTGTGAAGGAAAAAGGAAAAAGCACGCAAAAGGGCAAAAGTATAAAGATAGGAAGCAGATGGGTGACGCAGGAAAGCGCAGCAACTCACTACTCTTTTTCAGGACTCTGATTATTCCTCCCCACCTAAAATAACATCCATAGTACTTATCTTCCCTAAAAGCCCTTCCACTGTTCATACAAAATTCAGATGCTGAAGGGCATAAACGTAAGGGAGCAAGAAACAGTTAATTTGGGAAAAAAGGAACAAAAAACGAACCGTATGAAAATGCAAGAC


Gene Sequence:
>Vu_05743(-)
CCACACAAACTATACATCGTTAGAGAACATTGCAGGAAGCAAAAGAGAAAACAGAGAGAAAAAAGTGGAGGATTGTTGAAGAGAGAGAGACTCGTGATTTGAGAACGCCACACACACCCTCCCATCTCCGAAACAAAAGCTTCAAATTTTGGGTTCAAGAAAAGGGGATTTATTTAAAATCTAAAAAGAAAAAGAACTGCACAACAAAACTTGGTTGTGACACGACAGAGAAACAAGAAAGATCATTCGTTTGGGAGTGTTGTTTTGAAGGAAAAAGGTGAAGTTTTTTCATAGATCAGAGGTGATGTCGTGTTCTTCTTCATCCGGGTCTGAAGAGGACGATGAGGGGTTCGACTCCTACCGGAAAGGGGGGTACCACGCCGTCAGAGTCGGCGATCAGTTCGCCGGCGGCAGGTACATAGCGCAGAGGAAGCTGGGTTGGGGCCAGTTTTCCACAGTTTGGCTTGCCTATGATACTTCAACATCTGTATGTTATGTTTGATCCTCGTTCTTTACTTTTTCATTCTTTTTCTTCTGTTCATTTTCTGGTTACTTCCTTCCAAAGGGGTTGTTTCTTTTGAATTATCCGAAGTTTTGCTTTTTGAGATTCATTTGTCTTGTGATTTGTGTTTTGAGGTGAAAAGTTGTTGAACCCCCCTCCCCCTTAATCGTTATGAGCAATTAGTTTTTAGGGGAACTGAGTAGCATCAGGTGACCCATGTAGTCAACTTCAGATACTGAGATACGATTTTGTTGTTGTTATCACAATCAGTTTTGAATCTGCAGGGCGGTTGTTAAATTTTGTGCTTGTTTTGCGTGTTGCGTCAATCGTGTTTGTCTGCTTTGAATTATGTAGGGGTTAAAAGGCTTTTCATTTTTCTGCTTCATTGTGGTCTCGAAAATGTGTTTGTGTGTGTTTGTGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTTTAAATATATAATTTGAGGTTTTTAGTAAAATATTTTTTCTGGTATTTTTCTGTCTCCCAATATTTTTTCTTTGTACTATAGAAACATTGGTTATTCGGCCTAATGTGTGTATTTGTGTTGTCGGTTTCTGTCTTAAGGGTAACATTTCATTGAATGGATCAAATTGGGATATTAATTTTAAGGGTAACGTTTGATTGAATGAATCAAATTGCGATATTTGTGTGTATATATGTTGAAGAATCTTGTTTTCTTCCCCTGTCGGTGCCACTTCTTCTGTTGGTATTTGTATTTTTTAACACGTGTCAGAGATACCTGACGGACCTTTCATGTTTGGGATGACAAACATGGTTAGATGGTCGTCATCGTACAATGTGACCACCTGGAACACTTAGATTTCTCTGTTCGCAGCACCTCTTTGATTTTTTAGGTTCTTACTGATTTGGTAAATGTGTTAAGCTCCTTTTTAACACTAATATCTGGTGTCTTTTGTTTGTGTGTATTAGTTTTGTTGTTTGGGGTGAGCTGCATATAGAAACACTTTTATTCTGGATTTCAGTTCTAATTCAACAAAGCTTAATGCTATGATGGATTTGATCTCTAAGTAACAGTTGATGGGCAAATTACAGTAGCAGTTTGTAACAGTTTTGCATTTTGTTATTCTCGTGTCATGCTTATATTATATCTCAATTTCAACTTTTGACTTGCCCAATCAATGAGTATAACTTCATACTTTATTGTGTAAAGTACACTCCACACTTTAGTGTAATTCAATACTCAAGTTAGAGATTGACTTGTGAGTATATTATAGATACACTCACTAGTTTATCGATCCAGAACTTCTGCTACCATTAAACCACTTCTTTATTGTGATGGGGTCTGGCTAAATGCTTAAATTGAATAGGAACCGATAGAAAAAATAAACAGAAGATGGTAAGATAAACTGAAGCTTACTTCATGTAGCATTATACACTGTTTTGTATATCCAGGAGGGGTGTTTTCACAGTAGCACAATCCCTTTGGCACTTGCTATGAACTAGATCCAAGTATTACCCTTTATTCATCTAAATTTTCATGTATTCGTGTTTAATTAAAAAATCTTCCTCAAAGGTCTGCTTGTGTTCCAACTTCCAACTGATTTTTCTCTCAGCTAGTGTTGAGTTTTTTAATTGTTTTGGTGAAAAAGTGTTTTTTTTTTTAAAATTATTTTCTAATTTTTAATTTGAATTTTCAGGCATATGTTGCTCTTAAGATCCAGAAAAGTGCGGCCCAATTTGTTCAGGCTGCCCTTCATGAAATTGATGTTCTTGCATCCATTTCTGATGGCGTTGATGTTAATTCAAAATGTGTTGTCCAGTTGATTGATCACTTTAAGCACGCAGGTCCTAATGGCCAGCACCTTTGCATGGTGATTGAGTTTCTTGGGGATAGCTTGCTTCGTCTAATAAAGTATAACCGGTACAAAGGTCTTCCATTGAATAAAGTTAGGGAGATTTGCCATTGCATTTTGATTGGTTTGGATTATTTGCATAGAGAACATGGTATTATCCACACTGACCTAAAACCAGAAAATGTTCTTCTGATCTCTACCATTGATCCTGCCAAAGACCCTGTTAAATCTGAAGTCAGTCCAATATTAGAGAGGCCAGAGGGAAGCATAAATGGTGGAGTTACTAGTCTTATTGAGAAAAAATTGAAAAGAAGAGCTAGGAGGGCCGTTGCTAAAATCGCTGGAAGAACAGCTTCAATTGGAGGAATAGAAGATCAAAAGTCTGTGAGAAATCTTGATGGGATTGATGTGAGATGCAAGGTGGTAGATTTTGGAAATGCTTGTTGGGCTGACAAGCAGTTTGCAGAAGAAATTCAGACAAGACAGTACAGAGCTCCTGAAGTAATACTGCAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTCGCGTGCATTGCTTTTGAGCTTGCCACTGGTGATATGTTATTTACGCCCAAAGTTGGACAAGGTTTTAGTGAGGATGAGGTATGATGATTTTGATGTACCCTTTTATGTTCCTTATCTTTTATGAGTGGATGGCAGTGTTTATGATAATTGTTAAACTATAGACTTTATACCTTATATTTCCTTTCTATTAATGCAAGGAATAACTGTGTGTTGTGTGTATTAATGCAATGAGTTTCTATTGGTAATGGATGAAATTGAGTTTCATGCTTGTACATCACCGATTTCTGATTGTATCGAAACAGTTGTGCTATACTGTTATTGAATCATAGTCACCATTATGAACCCTGCTACATTTTGGTTTTATTTATAAGCATTTTCATAACTATAACTAGTGGTATTGGAATTATTCTTTGATTCATCCAAAAAGTGGAAAATACAAATTCTTTGGTTATTCCAGAACTGGTTAAGGATTTATTAGGTGTGATTGGCTTGACTTACAAAACTGCACAAGTAGAATATCTAAACTATGTGCTATGTTGCTTTCAGGATCACCTTGCCCTGATGATGGAACTCCTTGGAAAGATGCCTCGGAAGGTAGAAATTGTCTCTGTCTATTATTTATTGAAATAGCTACATGAAAAATCTAATCTTGCATGTTACAGGTTGCTACTGCTGGAGCAAAATCCAAGGATTTCTTTGACAGACATGGCGATCTCAAAAGAATTCGAAGACTAAAGTTTTGGCCCCTTAGCAAATTGTTGGTTGATAGATACAAATTTCCGCAGAGTGATGCTCATGAATTTTCAGAGTTTCTTCTACCACTTCTCGATTTCGTCCCAGAGAAGCGACCAACAGCACAGCAGTGTCTGCAACATCCATGGCTCCGGGGCACGGAGTCAAACGAAAAAAAGGAATCCAGTGTGGAGAATGTGGGTGTTGGGATGAGCAATCTCAAAATCAAGGGGGCAAAGTGAAGAAAAATTATTCAACAGTCACCATCCAAGACCCTTCCTTCCCCCATGAATGACTATTGAATGTAATTTGATTTTGGTTTGTGCAAATTTAATAAGATTTATTTTTTTATTGGACTAACTACACAGATGTAAATTAGTAAAGAATTTTGTTTATTCAGAGATATCTGACACAATTTGTGTGTATATTTACAACATGATGATTTCATCTAATGCCAAGTGGTAGTTGCTACTTGTATTCC