Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05699	LG1	85108481	85109740	PREDICTED: zinc finger protein 181-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/A	85108550	missense_variant	p.Glu397Asp
T/A	85108551	missense_variant	p.Glu397Val
C/A	85108556	synonymous_variant	p.Gly395Gly
C/T	85109195	synonymous_variant	p.Glu182Glu
C/T	85109215	missense_variant	p.Gly176Ser
G/A	85109231	synonymous_variant	p.Cys170Cys
G/A	85109240	synonymous_variant	p.Ser167Ser
C/T	85109251	missense_variant	p.Gly164Ser
G/A	85109264	synonymous_variant	p.Val159Val
A/G	85109269	missense_variant	p.Ser158Pro
C/T	85109277	missense_variant	p.Arg155Lys
C/T	85109284	missense_variant	p.Val153Ile
A/C	85109286	missense_variant	p.Leu152Arg
G/A	85109287	synonymous_variant	p.Leu152Leu
T/C	85109302	missense_variant	p.Thr147Ala
T/C	85109310	missense_variant	p.Asp144Gly
G/T	85109328	missense_variant	p.Ser138Tyr
G/A	85109331	missense_variant	p.Thr137Ile
G/C	85109342	synonymous_variant	p.Ser133Ser
G/C	85109350	missense_variant	p.Arg131Gly
A/T	85109360	synonymous_variant	p.Ala127Ala
C/T	85109362	missense_variant	p.Ala127Thr
C/T	85109370	missense_variant	p.Arg124Gln
C/G	85109382	missense_variant	p.Arg120Thr
C/T	85109384	synonymous_variant	p.Pro119Pro
G/C	85109386	missense_variant	p.Pro119Ala
C/T	85109392	missense_variant	p.Glu117Lys
C/T	85109489	synonymous_variant	p.Ala84Ala
C/T	85109491	missense_variant	p.Ala84Thr
T/C	85109494	missense_variant	p.Thr83Ala
A/G	85109513	synonymous_variant	p.Gly76Gly
C/T	85109514	missense_variant	p.Gly76Asp
G/A	85109516	synonymous_variant	p.Thr75Thr
C/T	85109530	missense_variant	p.Glu71Lys
C/T	85109540	synonymous_variant	p.Arg67Arg
G/A	85109550	missense_variant	p.Ser64Leu
A/T	85109553	missense_variant	p.Leu63His
C/A	85109601	missense_variant	p.Gly47Val
T/A	85109724	missense_variant	p.Glu6Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05699.1

MEEDQESRHQRENRGSVPREGEGLGGNGGGVNCNEIRSFTCDICNKGFSSGKALGGHMRIHNLSRKRVHGEKQSTGDAAKSKTAKWVMVDGNPTCSVCGKTFSSRKSLFGHMRSHTEKPRKGIRSNAPIVRASSNSTSSSTLSDDLTVDLSLVLRGWSVTAKRGRISSSCSKSDSGLEEGDEIEPRMQEAAYVLMLLARGSPKCEQVVVADQIQEHPFNKRGREEELSHPVLGNSDDVKIKKRNRKKVKLTELASTGEEGNRFARCRKCNTSFPSHQSLNDHLCSLQNSKNIESRSHGVSATKEEHHAKTTIQGEKTGPGTVLEDRAVEAMRGYECEVLKETFSIGQAFGDHKRSDWTRMGEGQSAQATSSNMGNGQNCSKVLSFDLNQIPAMDGEEGVQSDLFIPANIMTSSSYDSSC*

CDS Sequence:
>Vu_05699.1

ATGGAAGAAGACCAAGAGTCTCGGCATCAAAGGGAAAATCGAGGGTCTGTTCCTCGGGAAGGAGAAGGGTTAGGGGGTAATGGAGGAGGTGTTAACTGCAATGAGATTCGTTCTTTCACGTGCGATATCTGCAACAAAGGTTTCAGTTCGGGTAAAGCTCTTGGTGGGCACATGAGAATCCACAACCTCTCGAGAAAACGGGTTCATGGGGAGAAACAAAGCACCGGTGATGCTGCAAAATCCAAGACGGCGAAATGGGTGATGGTGGATGGTAACCCCACTTGTTCCGTTTGTGGAAAGACCTTTTCTTCCAGGAAGTCCTTGTTTGGGCACATGAGGTCTCACACTGAGAAGCCGAGGAAGGGAATTCGAAGCAACGCTCCGATCGTTCGTGCCTCCTCCAATTCCACTTCTTCCTCAACCCTTTCTGATGATTTGACCGTTGATCTCTCTCTAGTTCTCAGGGGTTGGTCCGTCACTGCCAAGAGGGGCCGCATAAGCTCTTCTTGCAGCAAATCAGATTCTGGTTTGGAAGAAGGTGATGAGATTGAGCCACGTATGCAAGAGGCTGCGTATGTGCTCATGTTGCTGGCCAGAGGGAGTCCGAAGTGCGAGCAAGTGGTTGTCGCTGATCAGATTCAAGAACATCCATTCAACAAGAGGGGACGTGAAGAGGAGCTGTCACACCCAGTTTTGGGGAATTCTGATGACGTGAAGATCAAGAAGAGAAATAGAAAGAAGGTGAAATTAACAGAATTAGCATCAACTGGGGAAGAAGGGAACAGATTCGCCAGATGCAGAAAATGCAATACAAGTTTCCCAAGTCACCAATCTTTGAATGATCATCTATGCAGCCTTCAAAATTCTAAGAACATTGAGTCTCGGTCACATGGTGTGTCAGCCACAAAAGAAGAGCATCATGCCAAAACAACCATACAGGGGGAGAAAACAGGACCAGGAACTGTTTTAGAGGATAGAGCTGTGGAAGCCATGAGAGGGTATGAGTGTGAAGTTTTGAAGGAGACTTTCTCAATCGGTCAAGCCTTTGGGGACCACAAGAGATCTGATTGGACCAGGATGGGAGAAGGTCAGTCAGCTCAGGCAACTTCTTCAAACATGGGAAATGGTCAGAATTGTTCCAAGGTTCTGAGTTTTGATCTCAATCAGATTCCTGCTATGGATGGGGAAGAGGGTGTTCAATCAGATTTGTTTATTCCTGCCAACATTATGACATCATCGAGTTATGATTCCTCTTGCTAA

Promoter Sequence:
>Vu_05699::LG1:85109740-85111740(-)

ATCCTATGTGAATAAGATTATGGATTCAACTATTTTAAAATTAAATTAAACTTTAAAATATAAATACGTGAATTGCGTAATTACTTAAATAGATTTAATTACATAAATTTTTTTAGTGAATTCATCTTGTTTTAAAAACTAAACTGATATGTTATATATTCAATTCAGTTTTTAAAAATAAAAATCCGTTTTTTATACTATTTCAGTTAATTAATGTGATATGTTCTCTCTTATAGCTCTTTCATAAATTTAAATTGGGAGCAATCTTAATTAAGTCCTATTCGAATATATGTTTGTTAGGATTATTAAGATTTGTCAAATTTAACCAGAAATCAATCTTTACGTGATGTTATTGAAACTTGAAGAGGCTTTTAAGAAAATAATATTCAAGAATTTTAAGTGAGAAGTTTAAAAAGTCTGTGGTGTGGTTTATTAGCTGTTATTTACTCATGGTAGGAATATGAGATTTGATTGTATAAAAATATATCTTTCAAAAAAAACTTTCCATGTACCTTAATTTTTTTTTATACCTTCCAACACCAAATACAAAATAACACTTTTTTTACTTTTCTTGTTGAATCTTAAATCATTTTAAATTTTAATATAAAAGTGTTATTTTATTAGTGTTAAATAGCTGTAAAAGAAAAAAAAAATAGTGTTTGTTTATCACTACCCATGTTTCAATTGTTTGAATAATAATAAAGGAAATATTGTTTTAAATATTTTCTGTTAATTCCACAACGTCCTGTCAATTAAAATATCAATCAATAATCAATCATCATTAAAAGAAAAACAGTTTTCTTGATTATATCTTTTTAATAAATATATCGTAATTTCATGTCTATTTCTTTAAATTATTGAATGATATATATATATATATATATATATATATATATATATATATATATATATATAAATTTTAAAAACAATGTAAATCATCTTTAGTATTAAATATAGGAGTGTTGTGCACGCATATTTTTAGTAAATAATAACTGTCTTGAGAGTATCATTTAGAAAAATATTTCATATATTTGATTATATATATTTTTAATTATTTTAAGTTAATATTTCAACACAATTAATGTCTGTTTTTATTGAATATTTGATAATTGCATAGGACTTGATATGGAAATCACAATGCAATAATCTAATGGTGGAGTCAACATTTATCTTATTATATATGTTATGTAAAATTTAAATAATAGTTTTCTTAATTTAAAAATGTTTCCACATACAAAAAAAAGAGAGATTATCTTATTAGTTTAAGATTTAATATTTGGAAGGGTAAAGATGTGGATAATTATTTAAAGAAATATAGTAAAAGTAGTAGATGGTGTAAATAAATGAATTATTTTGATGGGGATTAAAGAAAAAAGAATTAAAAGATGGTAAAGGGTGTTAGAGGAAGGGTTAAGGATATCTTTGAAAAGATAATTGTGGTAACAGTATTACAGCAGTTGTTTGTGGGAAAAGAAAAGATAAGTTAGTTTGAATATAGGGAAATTAATGTGCGTGAGGTGGGACAGAAGGGCATTTCTTCAAAACGTGACACTTCCATTCTTCCACAAACAGGTTAAAAAAGGGACTCTCCCTATGTGCAAGACTCGTCAAAACCCACACCACAGCTACGTAGTACGTTGTTTTGTTCTCAATTTCTGAGGTAGCTCCTTCTTCCTAACTCTTTTTTTTTTCTCATCTCTTTTCATGAGATCGTAAAACCCTGCAATGTGTGCTGTTTTCTTTGCGTTTTGATAAAACCCTGGAAGAAACTCGTATAGTGTGTTATTCAGGAGTCGAGAGATGATTTTCTTGGTTGCTAAGCTACCAAATCTTTGATCTGACCTGGTCGTTATCTCGATTTTTGGCTTCATCAGGTGTGTGTGCTATTTGTTGTAAATTGTACCCTTCGGTGTCATTTTCCTTAATCTCTATCTGGTGCAAGTGATAGAGCTCTCTCTCTCTCTCTCCGTTGATCACACGAAAAACCCGTTTTTGGCTCC

Gene Sequence:

>Vu_05699(-)