Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05500 LG1 82474995 82480081 PREDICTED: AP2-like ethylene-responsive transcription factor AIL6
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   lateral root formation, auxin mediated signaling pathway involved in phyllotactic patterning, maintenance of shoot apical meristem identity, lateral root formation, regulation of floral meristem growth, auxin mediated signaling pathway involved in phyllotactic patterning, root development, regulation of transcription, DNA-templated, regulation of floral meristem growth, leaf phyllotactic patterning, regulation of floral meristem growth, auxin mediated signaling pathway involved in phyllotactic patterning, regulation of transcription, DNA-templated, organ growth, plant organ morphogenesis, regulation of transcription, DNA-templated, flower development, lateral root formation, phyllotactic patterning, plant organ morphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, auxin mediated signaling pathway involved in phyllotactic patterning, regulation of transcription, DNA-templated, callus formation, auxin mediated signaling pathway involved in phyllotactic patterning, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, root development, regulation of floral meristem growth
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/C 82475157 5_prime_UTR_variant
C/T 82475166 5_prime_UTR_premature_start_codon_gain_variant
G/C 82475190 splice_region_variant
G/A 82475206 intron_variant
G/A 82475237 intron_variant
T/C 82475248 intron_variant
T/G 82475293 intron_variant
T/A 82475575 intron_variant
G/A 82475990 missense_variant p.Gly137Ser
G/C 82476024 missense_variant p.Gly148Ala
T/C 82476530 intron_variant
C/T 82476556 intron_variant
A/G 82476695 intron_variant
T/C 82476696 intron_variant
C/T 82476700 intron_variant
A/T 82476736 intron_variant
C/T 82476745 intron_variant
C/G 82476786 intron_variant
C/A 82476878 intron_variant
T/C 82476930 intron_variant
G/T 82477156 intron_variant
C/T 82477157 intron_variant
A/C 82477295 intron_variant
G/T 82477401 intron_variant
G/T 82477432 intron_variant
G/A 82477675 intron_variant
C/G 82477758 intron_variant
T/C 82477812 intron_variant
T/A 82477819 intron_variant
T/A 82478321 intron_variant
T/C 82478385 intron_variant
C/T 82478455 intron_variant
C/T 82478471 intron_variant
G/T 82478480 intron_variant
C/T 82478484 intron_variant
C/T 82478490 intron_variant
C/T 82478495 intron_variant
A/T 82478518 intron_variant
G/A 82478700 intron_variant
A/G 82478705 intron_variant
G/C 82478889 intron_variant
T/A 82479054 intron_variant
A/T 82479064 intron_variant
T/A 82479298 intron_variant
G/A 82479405 missense_variant p.Ser336Asn
A/T 82479463 missense_variant p.Lys355Asn
G/A 82479465 missense_variant p.Arg356Gln
A/G 82479544 synonymous_variant p.Glu382Glu
C/G 82479546 missense_variant p.Thr383Ser
C/A 82479614 missense_variant p.Pro406Thr
T/C 82479733 synonymous_variant p.Ala445Ala
G/A 82479814 3_prime_UTR_variant
A/T 82479843 3_prime_UTR_variant
A/G 82479864 3_prime_UTR_variant
G/T 82479897 3_prime_UTR_variant
A/T 82479982 3_prime_UTR_variant
T/C 82480001 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05500.1
MAGATNWLTFSLTPVEMLRSPDSSSHCMLDNFYATNGWTNSNELMDSESENQPLLVPKAEDFFENQTETQQDDSSLTQIYDHGSASVYFGDQQDLNAIPGFQAFSGTNSSSELDDSASDKTTLVAPAELGAHSGESGKGALSLCDAVGHDKAITAVELATPKKVSHTIGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQVYLGGYDKEEKAARAYDLAAIKYWGPTATTNFPISNYTKELEEMKHSGKQEFIASLRRKSSGFSRGASAYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGASAVTNFEMSRYDVENILNSSLPVGGVAKRLKLSSSPESEKKAIVTNEQQPEGTNETSTINFSAIQPVASIPYDSANAYPQNLFHQFHHSNSGSSSSVQESDAIVTNATALTILPPPPAVPGFFLWPPQSF*


CDS Sequence:
>Vu_05500.1
ATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCGTGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAACTTTTATGCCACCAATGGGTGGACAAATTCCAATGAATTAATGGATTCTGAGAGTGAAAACCAGCCACTGCTGGTGCCGAAAGCGGAAGATTTTTTTGAGAACCAAACTGAGACGCAGCAAGACGATTCTTCGCTGACCCAAATTTATGACCATGGCTCTGCCTCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCGATTCCAGGGTTTCAAGCATTCTCGGGTACCAACTCGAGCTCTGAGTTGGATGACTCGGCCTCAGACAAGACCACTCTGGTTGCACCAGCTGAGTTAGGTGCCCACTCAGGAGAGTCTGGCAAAGGAGCTTTGTCTTTATGTGATGCTGTTGGACATGACAAAGCCATCACTGCGGTGGAGCTTGCTACACCTAAGAAGGTTTCTCATACTATTGGCCAGAGAACTTCCATATACAGAGGGGTCACAAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGTGTACTTGGGTGGATATGACAAGGAGGAAAAGGCTGCTAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATTCAGGAAAGCAAGAATTCATTGCATCACTGCGAAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCCGCATACAGGGGGGTTACGAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGCGACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCTGTAACAAATTTTGAGATGAGCAGATATGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTAGGTGGGGTAGCAAAACGATTGAAGCTTTCGTCCTCCCCAGAATCGGAGAAGAAAGCTATTGTTACTAATGAACAACAACCTGAGGGCACAAACGAAACTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCGAACGCGTACCCACAAAACCTTTTCCACCAGTTTCATCATTCCAACAGTGGAAGTAGTAGCTCAGTACAAGAGTCTGATGCAATTGTGACCAATGCAACTGCACTGACCATCCTTCCACCACCACCTGCTGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTGA


Promoter Sequence:
>Vu_05500::LG1:82472995-82474995(+)
AAATAAAGAGGTTATATTGACAAACACTTAAAAAAGGATAAAAGTATTAATAACAAAAATAATTTAGAAATATTCTGTGTGTACATTCCAGAAGTTATTACTTTTTGGGACCAAGAGTTATAACTTTTTGACCTAAAAAATTATCACTCTTTAGTCTAACAAGCCAGAAACATCAAAGGTTACGTTTCCCCAGACAATGTATCAAGAGCTAATGACCTTAGTCTAGTCACTAACAAATGCTATAATTAGATTAATAACCTCATGGTAACTAACATAAGGAAGGTTATTAAGTGGTTGAGCACAAAATAAGTATACAATTATGGGGTTTTATTCGGAAAGTGAGTTAATTTTTGTTTTTGATATTATGTTTTTTTATCTTTTTAAAAAGTAATATTTAAAGAGTTAATTTTTGTCATATTTGCATGATATACTTAAAGTTGGTGACTTCTTCTAAAGTTAAGTTGTGTTAGAGATTAAAAATTTATCTGAAAATAATTTACACTAAAATTGTCCTAAGGTGCGACGAGGTCTTTGAAAATAATTTCAACTTTAGATACGATAAACTTATTTAAAAATAATTTCAATGAATATTATTGTTAAAAAAAAACTAAGTTGAATTGAAGTTGTGTATTGGTACACGATTTTAAAATTTTTATACGACTTTATTATTTTTAACTTGCGCTGTGTAACTTTTTCAAAATAATTTAGAATTATAATTATTAGATAACCTAGTAAAAATTTCCCATGTTTCTAAAAGAAAATAACAAAAAAACATGGCCACATCTAAGTTCTAATTTGATACTCAAATTTGTAATATAAATAAATCAAAGTTATAATGGACTATAACAGTTTCAATTCGACTTATTTATAACCAAAATCGTGAAACTCAAAGTTAATTTCAATTATTATAGAAGTTGTCATCTTATAACGATTTCTTCTTAATGTAAATTATATTGAAATCATCAGACACCGGTGGACTTCAACGTTACAGATATCACGTTACAACTCACTGCTTTGATTAATTTAATTTATGGTTAATCTGATTAAGTGTACTTATGTTAATAATTCATTTTACACAAAATCGTCATTTATTCAGAAAATTTAATCATGGACATGATGGCTTTTCTAGAACGAAATCGTCTTCCATAACCATCAGGTCATTTTTAATAAAGTTAAATCTTATATGAAATTTAATGACTTGAACGTAATATCATGTACATATACACTCCGGAGAGACCGTGAAGTTTGAGAGCACGAATAAACGTAACAAAACTAGAGGTATAAGAAAAGCATACAAAATCCAAATATTAAAGAAATATTCAGCTTTGATGGATATATATATGGATCTTATATGTCTTTATCTCCGTAGAAAAATTACAATTAAATTGACAGAACTATAAATAAAAATTTTATGATTTTTTTTTTCATTATAATAACAAGTTGATACTTTCTTGTTAAGAGACCAAGTTGATAATTAAACCTTAAACTTTTTATTTGTTTACTGATATTATGGTAACCCATTCATCTAAATAGAATAATTTCTGAAAGAGTGTAAACAAAGAGTCGCATTTGCATGCAAGACATGTGTGCGACTAAAACGAATTGTTTTTCCCAATTTAATAATATTTTTTGTACAAAAAGTGAGGTTATTTTGGTAATATACTACGGAACCCTGCCAAATTCTTCAATTTTTTTGCAGCCCGCATCTTTGGTAACCTTCTTTCTTTTCAGACAATTTTCTTCTGTTAAGAACAATAATACTAATAATAAAAAGAAAATAAGAGAAAAAAAAAAAAAAGAAAGAGTTGTCCACAAGATTTTTCAAAATGAAACTGAATTTTTATGTGGAAAGTAATATTGAATCTCTCTCTTTTGACAGCCGAGACCGCTAAACCCACCCCTTATAAGCCAACACCTTGCTCTTTCCACTCAACTCATCTTCCCTTCGAAGCTTGTTTTCTCTCTCTTTATTAAAAACTCTTTTTTGATTCAAGAAACTG


Gene Sequence:
>Vu_05500(+)
GTTCTTGCATGCATTCTTCGCCAATTTCATTCTAACCCATCACCCACCCTAGCACCTTCTTTTATTTTCTTTCCTTTCATCTATTTATGAGAGATAGTACTATCAGCATGGTGGGGCTGGAATAGCTCTGTCTATCGCTCTCACACACACACACAAAGATACACAGTGCAACGCCTTCGGCTGTGACTGGAGAGAGGTGATTTCAGTTTCGGGGTTCCGCTTCTTTCTTTGTTTTTTTGTTCGGTCATTTGTTTGTTTGTTTCGGCAGAAAACTCGTTTCTGAAACTGTCCTTGTTTTTCTGATCTGGTCGAAGCGTAGCGACACACAAAACCCATGGCCGGTGCCACAAATTGGCTTACGTTTTCGTTGACTCCCGTGGAAATGCTCAGATCCCCGGACTCTTCCTCTCACTGCATGCTCGATAACTTTTATGCCACCAATGGTAACGCCACTTCTCTGAATCACTCTTCTTTATGCGTTTACTCTTTTGGAATGGAAGGGTTCTTCACAACCCAACTCACTCACCCACGTCAACCCCTTCCTATTTATCCTGCACGATCTCCGATTTCATTTCTCACTTCGTAATTCACAATATTTTTAACATTCAGGGTAGCAAGCTTGTTCTTCCTTGTGTACACAATATATACACATGCTTATGATTATTATATTTTTTTACTGGGATTTGTTTTTTGCAGGGTGGACAAATTCCAATGAATTAATGGATTCTGAGAGTGAAAACCAGCCACTGCTGGTGCCGAAAGCGGAAGATTTTTTTGAGAACCAAACTGAGACGCAGCAAGACGATTCTTCGCTGACCCAAATTTATGACCATGGCTCTGCCTCTGTTTACTTCGGCGACCAGCAAGATCTGAACGCGATTCCAGGGTTTCAAGCATTCTCGGGTACCAACTCGAGCTCTGAGTTGGATGACTCGGCCTCAGACAAGACCACTCTGGTTGCACCAGCTGAGTTAGGTGCCCACTCAGGAGAGTCTGGCAAAGGAGCTTTGTCTTTATGTGATGCTGTTGGACATGACAAAGCCATCACTGCGGTGGAGCTTGCTACACCTAAGAAGGTTTCTCATACTATTGGCCAGAGAACTTCCATATACAGAGGGGTCACAAGGTAGGAAAACACCACACCACCATCAACCCTTCAATTTTTTTTATGGTGAATCTGTTCAGTGTTATTTTTATAAACATTATTATGATTATTCTATCATTGCTAAGCTCCTTTTGTGTCTTAAATTAATGAACCAGTCTGGCTTGTTGAGGGTTCAGTTGTCATTTATTGAAATTTGGTCAAGGGCGTGATGAAATCGGCATGTTTTCAAGCTCCTTTTGTATTACTGTTATTAATTTGTATTTTTGGGAATGTTCACTGCAGACACCGATGGACGGGTAGATATGAAGCGCATCTATGGGATAACAGCTGTAGACGAGAGGGTCAGGCCAGGAAGGGGCGTCAAGGTTCTTCTCTCTCTAATATCTCTTCATTTCGATTGTTTTCAACTTTTTTTTTTTTTTTTGTTAAATGTATTTATTATCAACTTTGAAAATACGAGCAACACAAAAGGAAATAAATAGGGAAACTTACTGTAGTGCAGAAAAAGAGGTTGCATGCATTTGAAAGTGCAGTTAAATTAATGTTTATTATGTGTACTCATGTACTAAGTATTTCTTACTTGCGTCTTTTTCAAATTTTCAAAATAGAATGAAAATTTCTATTTCATTTTTAGTAATTTTTTTCCTGTACAATTTTTTCTGTTCTAAAAATAAAGCATGAGATTACTCTGATGCGATGTGCCGCCGTTTTGTCACTGTGCGTGGGTGGGGTCTGCAATATCTCTCAGTTGATTTGATCCAATGTGCCGCCATTTTTCCTGGTTAATCTCTCTCCTGTTCGGGACCTGTTTGCGGGAATGCCTCTGCTTTTGTATTTTGTTTAAAATCTGATTTTGGTAAATTGAAATGTATGTTGAAACTTTAAATTCGTTTTTTTACGTTAAAATTGCCTAAGTACATTTAGACTTAAAAATAAATAGAGCATTGTTTGTGTTCCGTAGTGGAAGTTTGGAAGGGACAATTCCAAATGTGAGAGACCCTCTCTCATTCTGAGTTTGGCTTTAACTTTTGCTTTTGCTTTCAATTCGCCAGGAAAGCTGGGTTTGACCACAACATCATTTCTTGCTCACTGTATTGAAATTTGCACTTACATGAATGTGGAGGGAGTCCCATGTTTGGCTGAAAGGTTTTTTACAGTGTCCGGGCCCGCAAATAATAATGTCGTCTAGATTCTGAAACAAATTCACGGGATTTATCAGATCCTTGGATGTTTTTGCAGTCATAAGTTACATGTATAACTGCTAATATCTTATAATAACAATAATCACTTTTGCAAGAAAAGGGAAATTAAAGGCATTTTGTCTCCTCTTTAGAATAGGCAATTTGACATTTTCTTTTGGCCTGGTTTTATTTGGCTCTAGTGGATTATTAAGCTTTTGTGGAGTCAAAATTTTGAAAATTCACATCAATCGGTTCTTATAACTTTTTACTACTATTAAACCTTGATGGGGTCCTCCAGTGTCTGTCTGCTATTAGAAAAGACGGGCATCGCAGATGGATGGCATATCGTGTATTATCTTTTGGCTAGAATGGGAACCAAAGAAAAGTGAGAAAAGGAGGGTAAAAATATTAAAGTAACTTGCGTGCAGGCGCCATTGCATGCATTTCATCACTTTTCCTTTGGTCGTTTACATTTTTCCTAAGAAAAGTAGTTTTTTACCTGATTATTTTGACCGATCCATAAGGTTAAATTTGATTTTTCATGGCTTTTTCATTGCTGTTTCTTTGCATGGAATGTGGCATTGCGCACTTCATCACTGTGTCGCACGTCCTTTGACTGTTTCTACAGTGTACTTGGGTAAGAAATGTTTATCTTTGGTCATTTCCCAACTTATTTTAAACTTAATACTTTATATCAGATGATAAATTGTTGTGTTTGTATGTATTATTAGGTGGATATGACAAGGAGGAAAAGGCTGCTAGAGCGTATGATTTAGCAGCTATCAAGTACTGGGGACCAACAGCAACCACCAACTTTCCTGTAATAGTCACTTCTAATAATATTCTGTTCAGATCTCCATTAGTTGTGTGCATGAAATCGTACGTATATGTAGTTGAGTTGAAAGTATTGAAACGGGGTTAAAGAGTGAGGTAAATTCTGCTGAGTGAATGATTTTAGTTCACACTTCAAGTTCGTGTATTATGCTTCACTTGATACTAGTTAAAATCAAACTTGGTCACCCCCTGGTATCAGAGAAACATGCATTAGGTAGTATACGAAAAGTGGAGGCTAATGATCTGCGTAAATGAAGGGTCTCAGCAAAGTTGAACTGGTCAACAATAAGTAGAATCTTGCAGGAACCTCAGCGCAACGATTTAGCATGGATATTATTGTCAAACACTTAGTTTTTCTATTATATGTCTCAAATACAGAACTTTATAGATTTATATTGGGGACACTTGAAATGTAGAAATAGGAACCGTATTGGATCTTTAGCGCTTAACATGTTTTTTTATCGTCCAATGTCTTAGATTTCCAATTATACAAAGGAATTGGAGGAGATGAAACATTCAGGAAAGCAAGAATTCATTGCATCACTGCGAAGGTTAGCGCACACTTCCCAGTTAAACGTATTTATCGCAATATTTCTATCCTGGAACTAAAATTGCACCGGTTTCCTTGCAGGAAAAGTAGTGGGTTTTCAAGGGGAGCTTCCGCATACAGGGGGGTTACGAGGTTTGTGCATTAAAATCAAAACTTATGACACTATTGACGTACTTACTACCTTGTTATTATATTCCCTTTTTCTCTTATGCTTTAACTTTTTTGAACTTTCAGGCATCATCAACAGGGTAGATGGCAAGCAAGAATCGGCCGAGTTGCGGGAAACAAGGATCTATATCTGGGAACATTTGGCAAGTTTATACCCTATCTTGTTTCAACACTGTGATTATGGTTAAATATCATGTTTCACAAATGACATCTAGGGTGTCTGGTATCATGAATTCACTGTGTTTTTCACGCTTCTACTGTGTTTCCAAACTCACGGATCGTATAGTTTGAGCCCGTGACATAATATTATGTTAAAAAATTAAGTCCTCAAAGTCTTCATTTATAGTAGTAGAGAGTAATGCTAACAATGTTGAACACTGGTTTACTGGCCTGACTCGAAAGTTGAAACAACTTTTGTTACTTACGTGTTCTGTAATGTTCGTTTTTCTTGTTCTGGAAGTTGAATAGTTTTTGTTGCATTGTTGCAGCGACTGAAGAGGAAGCAGCTGAGGCATATGATATTGCAGCCATAAAGTTCAGAGGTGCAAGCGCTGTAACAAATTTTGAGATGAGCAGATATGATGTGGAGAATATATTGAATAGCTCTCTTCCAGTAGGTGGGGTAGCAAAACGATTGAAGCTTTCGTCCTCCCCAGAATCGGAGAAGAAAGCTATTGTTACTAATGAACAACAACCTGAGGGCACAAACGAAACTAGCACCATCAATTTCTCTGCCATTCAGCCAGTTGCATCTATACCTTATGATTCTGCGAACGCGTACCCACAAAACCTTTTCCACCAGTTTCATCATTCCAACAGTGGAAGTAGTAGCTCAGTACAAGAGTCTGATGCAATTGTGACCAATGCAACTGCACTGACCATCCTTCCACCACCACCTGCTGTTCCTGGGTTCTTTTTATGGCCTCCTCAGTCCTTTTGAGTTGCTGAAATGATGAACTACCTTCCAAAGATGGTCCTTTTGCTGAGAAGAATGAAAAATTACCAAATCCACTCTAGGGAGTGGATTGTGTAAGCAGCGTCTCTCAACTCAGATGAGGAATATTGAGTTGGGCATTTTCAAGCTTTCAACAAAGCTTTCTAATTGCTTGATAACTTGCAGCAGCATAATAAATACTTTATTTTTTCTTCAATCAACTTCATTCAGATTTTCTGCATTTCTTGTACGAACTAAATACTCATGCAACTGTGAAGTTTGTGGAGCGTTATTATATTTCCAACTATTCTGCTT