Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_05421	LG1	81378978	81379349	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	81379004	synonymous_variant	p.Pro9Pro
C/G	81379005	missense_variant	p.Leu10Val
T/C	81379018	missense_variant	p.Leu14Pro
C/T	81379025	synonymous_variant	p.Ser16Ser
C/T	81379060	missense_variant	p.Ala28Val
T/C	81379077	missense_variant	p.Ser34Pro
C/T	81379085	synonymous_variant	p.Leu36Leu
T/C	81379089	missense_variant	p.Phe38Leu
C/T	81379115	synonymous_variant	p.Ser46Ser
G/A	81379116	missense_variant	p.Gly47Ser
A/G	81379156	missense_variant	p.His60Arg
C/T	81379201	missense_variant	p.Pro75Leu
G/A	81379220	synonymous_variant	p.Gln81Gln
G/A,T	81379255	missense_variant	p.Ser93Asn
A/G	81379281	missense_variant	p.Thr102Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_05421.1

MATPTPHPPLLLILLSTSWSPPLWGLSADVAHLSFLSFSLADNKFSGPILPPLSSLSALHFLNLSNNGFNQTFPPELSRLQRLEVLDLYNNNSTVSLPLVVTQMLNLPLVSTKLFHRIEYIPL*

CDS Sequence:
>Vu_05421.1

ATGGCGACACCGACGCCCCACCCTCCGCTTCTTCTTATTCTGCTCTCCACATCGTGGTCTCCACCTCTCTGGGGTCTCTCCGCCGACGTAGCTCACCTCTCATTCCTCAGTTTCTCCCTCGCTGATAATAAGTTCTCCGGCCCCATCCTTCCGCCTCTCTCCTCCCTCTCTGCCCTCCACTTCCTCAACCTCTCCAACAATGGCTTTAACCAAACCTTTCCCCCGGAGCTATCGCGCCTCCAGAGACTCGAGGTCCTCGACCTCTACAATAACAACAGCACCGTCTCACTCCCTCTGGTCGTCACGCAGATGCTTAACCTCCCTCTGGTCAGTACAAAATTATTCCACAGAATCGAATACATACCACTCTAG

Promoter Sequence:
>Vu_05421::LG1:81376978-81378978(+)

TAAGTAGAATATCGGAATAGGTGAAACATATGTGATAAGTTAAATAGTTTGAAAATCTAGTAACCTAGGAAAGTTGTAGAAAAACATTTGGGCTTAACCTAGATGCAACTCTAAACAATTACCTAAAGTTAAAAGCGTCAATGAGAGCCTTGCTAAATGCATAAGCTATACTCTATCAAACGGTGATTAGTCAAAACTCTCAAATAGATAAAAGTGTCGAGAAAATGTTTTTGGTAAGTCATTTGAAAGTCTTAATTAATATTACAAAAGCTTGTGAAAGACAACTCGCTAAGCCCATTAGCTGAAGGAAGCAGAATCTTAAAGCGTTTACAATGGACTAAATGATATCATTAGCTAAATCATTCACTTCGTCCAACAATGAAGTCTCATTAATGCTTGGCATCTTAGTAAAAGGGCTTAAATGAAAATATAAAAATCACTTTATTGTTCAGAAGAAGCATTAAATGTTATTAAATGATCAACGTTCAAAAACAACAAAAATGATAAGAGAAAAGACATATTTATTGCATGCATATCTATTCTACTTTTTGCAAATAGCCTACTACATGCATCCACATATCCAATGCATATCAGAAGTGGACGTTAAAAACAAAGAAGACATTCACGAAATGTTCTCTCTATTAGAAGTTGTGTCAGAAAAATAGTACAACCTACTTCTATCAAAGTACTAAAAAAGCAAGTCTGCTATGACAAGTTAACTTTAACCAACGACTGCTTCACACGACAAGACTAAGAAGACACAATATTCAAGGCAAAAGCTCAATCTAACGAATATCTTTTGAGAAGTCTTCAAATAGAAGATGATTCAAAGAAAGAATCAAGAGAATAACTTACGAGAAGAATATCATACAAAGAGAAAAGAAATATCGCCGCCGAGAGAAAAGCACATAACAACTCAAGAATAAAAAGAGAATATCTTAAAAGAAAAAGCTTAAGGCTTACTTCACTTGGAGGAGAGGATTTGAGGGAGAGTGAGTGGATGGATTTGAGGGGATTTGAGGATGAATTAGAGGTTATTTATTTGGATGGATTTGGAGGTAAATGGAAGTGGATTTGAAAGTAAAGTTTATAAGAATTAGTGTACGATTTGATTGATGTGACAGATAAAAAAAATTTGTTTAATTGGTAGAAATTGAAGATTACCAAAATGCCCCTAGTTATTAAAGTAATATAAAATGATAATTGTTAATGTTATATTTAATTGTAAAAATGTTTATAAGGAGAAAAAAAATAAAAAATAATTTTTAAAATGTATTGAAATAATTATTTTTAAAATATAAGAGTAATGATTCTTTGAGATACCTAAATTTTTTACATTCTTTTGACATTATTCTTTTTTATTTTTTACTTTCTTCTTTCTTAAAAAAATACAAAAATTTACATTTTTATGACCATTATATCCTTGTGCTCGTGTCAAATAAATGTAAAAGCTTATCATGATACCATTACTCATAAACTAAATTATCAATTATTTAGTAGATGATAAATTAATTTTAAAACGTATTTTCATAGATTTATAAGAATTACACTCACAAATTAATATAAAAAAATAATGTTAAAATTACACTTATCTGGATCAGTGAGTAAAGGCATGATTTCTTGACTTTGAGAGCCATAGAGAATATTGGAATCAGATCGAAAAGGTAGAATTGTATCGTCTTGGATTACATCATTACATGCAAAATCATTTTGAAAAGGAAAAGAAAAATTCTCTTCTCAGTCTCCACTTACCTAAATTCCCTGCAACACCATTTGAAGTAGAAAAATTGAGAAAGATAGAGTGAAGAGAAAGAAATGGAGAAAATAGAGCAGTGAATGGTGAGTACCAATAGAATAAATATGCACGTGGCATCAATTGGGTCAGGCCCAGTGGTTTTGTTCCTCCACGGCTTCCCGGAACTATGGTACTCGTGGCGCCACCAGCTTCTGTCGCTCTCCGCCGTGGGTTACCGAGCAATCGCCCCCGACCTTCGCGACTA

Gene Sequence:

>Vu_05421(+)