People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_05046 LG1 74428371 74429289 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 74428653 missense_variant p.Cys95Ser
G/A 74429266 stop_retained_variant p.Ter243Ter

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_05046.1
MDFEEHDEAQLGMPGPTYDHSPFNPCRVKMPTHIVQEDPLPPAATPPPTISRNNARGKYKECLKNHAVGIGGHALDGCGEFMAAGAEGTLDALKCAACNCHRNFHRKDPSESSFLMPFQHRRHQPPPQFAAAYYRAPAGYLQVAGPHRGGLATLALPSTSGAGGGAQSPREDQEDVSDPSGGGSGSNKKRFRTKFTLEQKDKMLAFAEKLGWRIQKHDESVVQEFCSQTVTITATIPSWKLNVEAGKLRC*


CDS Sequence:
>Vu_05046.1
ATGGATTTCGAAGAACATGATGAAGCTCAGTTGGGGATGCCTGGACCCACATATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCAACTCACATCGTCCAGGAAGACCCTCTGCCTCCTGCGGCCACTCCACCACCCACCATCAGCCGAAACAACGCCAGGGGAAAATACAAAGAGTGCCTCAAGAACCACGCCGTGGGAATCGGCGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGGCGGCGGGAGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCTTCGGAGAGCTCCTTCCTAATGCCCTTCCAGCACCGCCGCCACCAGCCGCCGCCACAGTTCGCGGCGGCCTACTACAGGGCCCCGGCGGGCTACTTGCAGGTGGCGGGGCCGCATCGTGGAGGCCTTGCCACGCTGGCACTCCCCTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAAAAACACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGTTACCATCACAGCCACCATTCCAAGCTGGAAGCTCAACGTTGAAGCTGGGAAATTGCGTTGCTGA


Promoter Sequence:
>Vu_05046::LG1:74426371-74428371(+)
AAATGAACCAAAAATAGAGACATTTACATTATATGAAAATTTCTAACTGAGATCAATAAAAGAATATACCATGTCAATTGATCAAGGAAGCCTTTATTATCAATGATGGATAAATAATTTTAACCTATGTTTTAGGTGAAAATGACCTTGAATGACATAATTTAAAAGTAATATCAATTGATTTTAATTGAATAAATTGTGTTTGACACCAATTGTTAAATATGAATGATATTGACAAATAAAAACTCTAACCAAAAAAATCACACTTACGTACATCAATACAAGAATAACATTGATAATGATGACAGAAAATAACTATAATAAAATTTAACCAAGATAAACTCATTTAACCTTACCAAACAATATTAAATCAATAACATCTAGTCTTAAATAAGTCAAGGATGTTTTTATTAAAAACAAGTCAACAATGTTTCATTCAAGATTGAGTTAAACAAAACAATAACTGATTTGAGAGATAATAAACTGTGAAAGTTTTGAAGTGCTTAATATTTTTTAAATATATTTTTAATTTCTTCAATTCTAAGTAATTTATTTATGGTTAAAACAATCTTAATATATTACATTCTTCTAAACCACTCTATTAAAAAATTATATTACTTTTTATAAAATATTTTAACATTATTTAAAGTATTACATTATCTTGAAAAAAAATACTTTATTTAAATCCTTCGGTTCGGAGGGTAAAAGATAATATTATTAAAGAGAATTACAAAAAAGATTAAGATAAAGTGTATGTGAAGTTGGATTTAAATTGTTTCGCTTGTTTTCTTTCTTTTTCCTAATTGTTTGCCTAACCTGTTTTTTCTCATAGCATAACATCTGTGAAATTATGTTCAAATAGTATATTATCAAATAAATGTTATGTTTCATATTTAAATATTTTTACTTATTTTTAATATTTTTATTTATTTTTTTCATATAAAATATTTGACTTCCAATTTTAAGTGTTTAATCGCATGAACTTATCGTATTTTCATTCTATTTGATATTGGATTTTTGTTTCATTTAAAAAACTTTTATTTTGTTAAGACAATTTTCATCATTTATAAAGGTGAATATGAATTAATAAAACTAGTTTTGCTTCCTCTTACCACCATTAATTTTAGTGCCATGTATTTCTCAAATATACTAATATATATTGATTTTAATATTTTTTATATATTAATTTTTATTTAATGTATCAAAATAAATATATTTTTGTATTGGAATTGAGAGTAAATTGCTATAGATGATTAAATGCACCATAATCACATATTCATATCATTCCCCAATAATCCTTGTGATGGCGTCTGTATATGATACATCTGACAATAGATTGTTATGAACGGTTAAAATCAGTGGTCACCTTAAACCACATCTTTAACTACTCCCCTAAAAATTCGCTCCTTTATTATTCAACAATTAATCATACCTCGTAATAAAGAATTACATTTATTGCAGGAATAAATTCAGATGTCTTTAAATATATTGTTTGACTTTTTCTAACTAAAACATTGTTACATAAATACATGTTTTAAAAGAGACGCTAAAGTTCAAGTGTAATTAAAGTCTATATATTAAACAAACTATTTTAGTTTATTTGATTGGAAAATAAAATGATAATATAGATAGATTCATGAAATATTAAAATTTTGAAACGACATCCAAAGAGGATAGGAGAAATTTGAATCCATATCCAAAGAGGCAAATAGTGTTTCAGATTAAGGTTTTCCACCAATAAGCAATTTATGTTTGATATAATAAACATGAATAGTCGTGTGAAAAAAAAAACTAAAAAATAAGATTGGATTTAGGCCGTGGAAGACAAGGATAGAGAATTAAGAGTGGCGAGGCAGAAAACAGAGAAGTGGAAAAAGTGTATGAAACTGCCATTAATGACTTCTTTGTTTGTTTCCTCTCCAACACTTGCTTATTAAGCTCCGTCACCCATCACCCTCTGCGATCTCACCCTCCAAACCATAATTCTCAACCTCCCAAAA


Gene Sequence:
>Vu_05046(+)
ATGGATTTCGAAGAACATGATGAAGCTCAGTTGGGGATGCCTGGACCCACATATGATCACTCGCCGTTCAACCCCTGCCGAGTCAAAATGCCAACTCACATCGTCCAGGAAGACCCTCTGCCTCCTGCGGCCACTCCACCACCCACCATCAGCCGAAACAACGCCAGGGGAAAATACAAAGAGTGCCTCAAGAACCACGCCGTGGGAATCGGCGGCCACGCGCTCGACGGCTGCGGTGAGTTCATGGCGGCGGGAGCCGAGGGTACCCTGGATGCCCTCAAATGCGCTGCCTGCAACTGCCACCGCAACTTCCACCGGAAGGACCCTTCGGAGAGCTCCTTCCTAATGCCCTTCCAGCACCGCCGCCACCAGCCGCCGCCACAGTTCGCGGCGGCCTACTACAGGGCCCCGGCGGGCTACTTGCAGGTGGCGGGGCCGCATCGTGGAGGCCTTGCCACGCTGGCACTCCCCTCCACGTCAGGTGCGGGCGGTGGGGCCCAGAGCCCGAGGGAGGACCAGGAAGATGTGTCGGACCCAAGTGGTGGTGGTAGCGGGTCCAACAAGAAGAGGTTCAGAACCAAGTTCACTCTGGAACAGAAAGACAAGATGCTCGCTTTCGCTGAAAAACTGGGTTGGAGGATTCAAAAACACGACGAGAGTGTCGTGCAGGAGTTCTGTTCCCAAACTGGTGTTCAACGGCATGTCCTCAAGGTTTGGATGCATAACAACAAGCACACCCTTGGTAAGAAGCCCTAGAAGAAATATAAATCAACAACCCCGTCTCTCTCTCTCTATATATTTATATCCTACCCTTTCTTCACTCTCTATATATATGTATGTTCCTATATATCTAGTTACCATCACAGCCACCATTCCAAGCTGGAAGCTCAACGTTGAAGCTGGGAAATTGCGTTGCTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322599