Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04973 LG1 72521059 72523972 transcription factor bHLH90
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, pollen development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, anther wall tapetum development, anther wall tapetum development
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, chromatin binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, protein dimerization activity, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
A/G 72521351 downstream_gene_variant
T/G 72521356 downstream_gene_variant
C/T 72521362 downstream_gene_variant
C/T 72521363 downstream_gene_variant
G/T 72521622 missense_variant p.His443Gln
T/C 72521650 missense_variant p.Lys434Arg
T/C 72521856 synonymous_variant p.Lys404Lys
G/A 72521938 missense_variant p.Pro377Leu
C/T 72521946 synonymous_variant p.Val374Val
C/T 72522246 missense_variant p.Glu304Lys
C/T 72522395 missense_variant p.Cys254Tyr
A/T 72522416 missense_variant p.Val247Asp
C/T 72522464 missense_variant p.Ser231Asn
G/A 72522526 synonymous_variant p.Pro210Pro
T/A 72523023 downstream_gene_variant
T/G 72523029 downstream_gene_variant
A/G 72523129 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04973.1
MIHHSAADKNLSATMCFNLGDCYKVEWLRPLVETNVWDYVVVWKYGDDPTRFIEWIGCCCRGSCSVNICVESKEEKGEECHLAPICRDKYLQHHVRTKACEALAQLPFALSLYSGVHGEVAISQQSRWLNKDSIGTQVLIPIVGGLIELFTEKLIPMDMNIIEFITAHGCVSLKQEAISAQSYTSLNIIEHLPLREQYSHWWLPHMSATLTPSVHQPATKQCNSHPSIEGPPSGSNPSTEEPSFDSKFVGLIPDECLKQSTKMSPISKTKMPKYSKTSGKQQRGLSSHCSDGEEDKSKLVKEPQKERYQAKNLVTERNRRNKIKKGLFTLRSLVPKITKMDRAAILADAVDYIKELQAQVNELKNEGSALEVQDCVNTPKLRKTADKEQEGTRSNTLNQSSSDCTKKMQMEVQAEVHYIGKKDFLIKLYCEQKQGKFSKLIESIHSIGLQVTSANMTTFDDKVLNILTVKATKKDIHPTKLKEYLIQKTSDDRQSR*


CDS Sequence:
>Vu_04973.1
ATGATACACCACTCCGCAGCTGATAAGAACTTGTCGGCTACCATGTGCTTCAATTTGGGAGACTGTTATAAAGTAGAGTGGCTTAGACCCCTTGTAGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAACATTTGTGTGGAGTCCAAAGAGGAAAAGGGTGAAGAATGCCACTTAGCTCCCATTTGCAGGGATAAATATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGTGTGCATGGAGAAGTTGCCATATCACAACAATCAAGATGGCTTAACAAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAGAAACTGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTGAAGCAAGAGGCCATATCTGCACAGAGCTATACCAGTCTGAACATCATTGAACATCTGCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAGCAACTTTAACTCCCAGTGTCCATCAGCCTGCAACAAAACAGTGCAACTCACATCCTAGCATTGAAGGACCCCCAAGCGGTTCTAATCCTTCCACTGAAGAACCATCGTTTGATTCAAAATTTGTTGGTTTGATTCCAGACGAATGTCTTAAACAATCAACTAAAATGTCTCCCATCTCCAAAACTAAAATGCCCAAGTACAGTAAAACTTCAGGGAAGCAACAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAAGGTACCAAGCTAAAAATCTTGTCACTGAGAGAAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGATGGATAGAGCTGCAATTCTTGCAGATGCAGTTGACTATATAAAGGAATTACAAGCACAAGTGAATGAACTAAAAAACGAAGGCAGTGCTTTGGAAGTTCAGGACTGTGTGAACACACCAAAATTGAGGAAGACAGCTGACAAAGAACAAGAAGGAACCAGAAGTAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAAGTACAAGCAGAAGTGCACTACATTGGCAAGAAAGATTTCTTAATTAAATTATACTGTGAGCAGAAGCAAGGTAAATTCTCAAAGTTGATAGAATCTATACACTCAATTGGACTTCAGGTGACTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACGGTTAAGGCAACCAAGAAGGATATTCACCCCACTAAACTGAAAGAGTATTTAATACAAAAGACAAGTGATGATAGACAAAGTAGGTAA


Promoter Sequence:
>Vu_04973::LG1:72523972-72525972(-)
TTATAATTTATAATTTTACATTCTATTTTAGTTGTTTTCAAGAATGAGTAAATCATGTTATCGTAATTGAACCCGTTTATATATAGTAATGGAAACCTATACATATATCCATGTGTATCCAACTTTATTTTTATGTAATAAAAAATATAATTAAAAATATTAAATATATCGTATGACTTTCTCATCAACACTTCCAAGGTTAACTACTCGGTCAACGTTTCCAAGAGCGTTGAAGAGACTTTATGTTTCTATAGACCAGACGACTTTTCATTGAGCCGATAATTGATTCTATTGTTAAGCTCATTACCATGAATCGAACATGTTTACAAGTAAAAACGTAAAACACATTTATTGATTTTTTGACTGTGATTAGGCCAACTCTAATTAAAAGCCTATTTCGAAACCTATCAATACAGAGGTAAAGTAAGAAGAGAAGTGATTGCATTTATTGCGAATTTAAGACTTTATTGTGATAACCGATCAGACATGTTTAACTGACTTGAGCGACAAAGCGTCTTTGACAAGTATTAAAGATTATTGTAACGGAGACTCAAGATAATCTTAAAAGATTAAGGAGAAAGTATGATGGAGTAGTTCTCGACCCTACATCCAAAACATTAAGTATGATGATAATTTTTAAAATAAAAAGATTACTAAAGTTTATACAAAATTATAAAAAAAAATATTTTTATTAACCTCTATGATAAAATAGGTCCTTGGTATTTTATACAATAATAAAAATCACTTAAATGAGTTGTGTCTATGATAAGATCGGTAATAATATGAGTAAACTAAAACAAAACATCTAGTTATAGATAGTTTTATTTAATAAATATTGTACAACAATCACTTTGTTTCTTTAAGTTGGAGAAAACTTTTCTAGCATGATAGTTGTGTGCTGCCTTAATTCCTAGAAAGAACTTGGATAATTTTTTTCTTACACCCAATATTTGTATATATGATTCACATTGCTCTTAATTTTTTTTCTTCTATTAAGACATGTTAAAATGGGTTAGATAACTTGATTTATCATGAATTTAACATAAATGAGATTTAAAAAAATATGTTTTTTTTTTAAATATGAAGTGAACTCAACTCACTGAAGCTTACTTATAACTCATCAATAACTTTTCAAAATTATTTTTCATTATAATTATTTAGTATATGTAATTATGTAGATTCATGCTTTAATATTTTTATTCCTTAAATGTTGTTTAATAATATTTAATTTATTTATTTATCAAATTATATAAGTAACTGTTGCGATTTTTACTTAATATATTTATAATATTACTTTCTAATGTTTAGGTAAACAACACCTGCTATAAATAGGCAGGTCAAATTAATTACTTTATTTATATTGCAAGTAAATCCATTTATTATTGACACGGATACATTATTTGCACTATGGATGTACCTAAATAATCTTCAAAATAAAATAAAAAAATATGAATTTTCAAAGCATTATGCACATTTCTTAAATCATTGGTAGCATATTCCTTAATTTTGTATTTTTTTTTATTGGAAGCAAGAAGGTCTCTTCACTTTAAAAAAGCAATAAAAGAATAAATTTGAACTTGTTAATTGTTAAAGATGAAAGAAAGGTTCATTAAAGGAAAGAGTCATTGTGCAAAGAAAGGAATTACTTTTCTTAACTTATGAACTCTTTGACGATGAATTCTAAGTAAATTGTCAATGATTGAACAAAAAATTATGAGTAAAAGATATAGAGTAAAAGGAATGGCCACAATTAAACTGTAATAATTTGAAATGATAATAATATAATAATATTAAATATATGAAAAAAAGGAAAGTGAAAATGTAAATATTAATAAAAGGTATCTAATGATTGTTCAGTTATGGGTTGCTTTCAATGCAACTTGTTGAAAATGGTTATTTTGTAGTGGTGGTAGCCAGGGTTAGTTAGTCAAAAACAGCTTCTGGCCTCCTTCACTGGCAGGTACAAGATTCCCACTGTCAGAGATATGCTACTGATAACA


Gene Sequence:
>Vu_04973(-)
ATGATACACCACTCCGCAGCTGATAAGAACTTGTCGGCTACCATGTGCTTCAATTTGGGAGACTGTTATAAAGGTGCCACCAAATGGTCTATGTAAGGAAAACATATGCAAAGTTGCATTCTTAGGTGAAAATGAGAGGTCTTGGTGTAGTAGAGTGGCTTAGACCCCTTGTAGAGACCAATGTTTGGGATTATGTAGTTGTTTGGAAATATGGGGATGACCCAACTAGGTACTTTTAAAGAAGTCATTTTTTCCTCCATGTGGAAATCAGGTGTTTAATGCATTTTGATCCCTGTGCAGGTTTATTGAGTGGATTGGTTGCTGTTGTAGAGGGAGTTGCAGTGTGAACATTTGTGTGGAGTCCAAAGAGGAAAAGGGTGAAGAATGCCACTTAGCTCCCATTTGCAGGGATAAATATCTTCAGCATCATGTTAGAACAAAGGCTTGTGAGGCTCTTGCTCAGCTTCCTTTTGCATTGTCTCTCTATTCTGGGTCTCTCTCTCTCACTCATTCTGACTGTTATCACTTGTGATCATCTCTCTGTGTTTGTGTGTCTGTTTTAATTATACAAACTATGTACACATGTATATAAAAGTATGAATGTAATGTAATTTTCTGTTTACAAATTTCAGTGTGCATGGAGAAGTTGCCATATCACAACAATCAAGATGGCTTAACAAGGTATTCATTGTTTTTTACCTGATAAAAAGAATTTTTCTCTTTTTTTTCATGTGGTCACTTTTATTATAGCTTGAAACTTTCTATTAGATAGTGGATACGGTTTTATATTTGTGAAGTGTTTGTAAAGCCACAATGAAAGTAGTCTCTTATGTTCTATGATGGTCATGGAAATTCTGTTCTTACCTTAATCTGATTAACTACCAAATGATTTTTCTGAGTTAACTTTATCACATGATCATCCAAAATCAGTGACAATCGTGATAAAATTAGCTCCTCATATTCATAAAATGTCATGGATACTAGCAGATAAATTGTCCATTGCTTTGTTTGTTAATTTGTCATGGATATTTGCAGATATATGACATATTTTAAGGGAGACTGTTGATGGTTTGCTCACCATAAATAATAAGATCATAAACTAAAAATCTCACTGTTTTTGACAGGATTCAATTGGAACCCAAGTTTTGATCCCTATTGTTGGTGGTCTTATTGAGCTCTTCACTGAGAAACTGGTAGAATATAAATTCTGATATTTGTTGACAACACCTCTGTTTGAAAACTCTTGTGTTAACAAAGTATCCATCTTTGTCAGATTCCAATGGATATGAATATCATAGAGTTCATAACAGCACATGGCTGTGTCTCTTTGAAGCAAGAGGCCATATCTGCACAGAGCTATACCAGTCTGAACATCATTGAACATCTGCCATTAAGGGAACAGTACTCACATTGGTGGCTACCACACATGTCAGCAACTTTAACTCCCAGTGTCCATCAGCCTGCAACAAAACAGTGCAACTCACATCCTAGCATTGAAGGACCCCCAAGCGGTTCTAATCCTTCCACTGAAGAACCATCGTTTGATTCAAAATTTGTTGGTTTGATTCCAGACGAATGTCTTAAACAATCAACTAAAATGTCTCCCATCTCCAAAACTAAAATGCCCAAGTACAGTAAAACTTCAGGGAAGCAACAGAGAGGTTTGAGTTCTCATTGCAGCGATGGGGAAGAAGATAAATCAAAACTGGTCAAGGAGCCTCAGAAGGAAAGGTACCAAGCTAAAAATCTTGTCACTGAGAGAAATAGGAGGAACAAGATTAAAAAAGGGCTTTTTACTCTGCGGTCTCTAGTCCCAAAGATAACCAAGGTAGATAAACTGCATAACTTAAAAGGCCTATTTATAATGGTTTGCATCCTCAATTTTGCCTAGTATCTGAGCCATCAAATTTTGGCAGATGGATAGAGCTGCAATTCTTGCAGATGCAGTTGACTATATAAAGGAATTACAAGCACAAGTGAATGAACTAAAAAACGAAGGCAGTGCTTTGGAAGTTCAGGACTGTGTGAACACACCAAAATTGAGGAAGACAGCTGACAAAGAACAAGAAGGAACCAGAAGTAACACTCTTAATCAAAGTTCTTCTGATTGCACTAAAAAGATGCAGATGGAAGTACAAAGACTTTTCATAACTTAGTAGTTTTTTTCTCCAATTCCTAGATAAAACTAAATTTCTATACGTCTTATCAGTGACTTAATTAAGATATATAATTTCTTAACCTGTTAACAGGTACAAGCAGAAGTGCACTACATTGGCAAGAAAGATTTCTTAATTAAATTATACTGTGAGCAGAAGCAAGGTAAATTCTCAAAGTTGATAGAATCTATACACTCAATTGGACTTCAGGTGACTAGTGCCAATATGACGACATTTGATGATAAAGTCCTTAACATTCTGACGGTTAAGGTAAGAATATAATCATTCATAGAAAAGTGCATTAATTTGCTTGATATATGGAGCCCCACAAATAAGATAATTTTTTGGTAATTCCGCTCAGAACTTTCAGTTCCACTCCAAACACTTATCACATTACTGTTTAGGTTTATGAATTAGACATGGATCTACTGCTACAATCTTATATTCAAAGAGGGATTAGACAAGTACGGGAGGGACCAAAGAGTAAAAAAGATTTAAGTCATGGAAAAAAATGTAACCTGCCTCATATTGAAAATTAGGTTGATTAGAACTACTATTATCTGAAAGCATTCATCCTTCTATCCCAACACATTAATCACAGTCTCTCATAGTTCCCCTTCACAACTTCAGTTCATAGGTCCCCTTTATATGCAATGAGATTAAATTCTGTTCTACAGGCAACCAAGAAGGATATTCACCCCACTAAACTGAAAGAGTATTTAATACAAAAGACAAGTGATGATAGACAAAGTAGGTAA