Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04908	LG1	71265008	71266861	"hypothetical protein TSUD_220560, partial "	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	protein phosphorylation, protein phosphorylation, phosphorylation, phosphorylation, protein phosphorylation
Cellular Component	located in	mitochondrion, mitochondrion, mitochondrion, mitochondrion, mitochondrion
Molecular Function	enables	transcription cis-regulatory region binding, protein serine/threonine kinase activity, transcription cis-regulatory region binding, protein serine/threonine kinase activity, protein kinase activity, protein kinase activity, protein kinase activity, ATP binding, transcription cis-regulatory region binding, protein serine/threonine kinase activity, transcription cis-regulatory region binding, ATP binding

SNP	Position	Effect	Amino acid change
C/A	71265196	missense_variant	p.Ala260Ser
A/T	71265204	missense_variant	p.Val257Glu
G/T	71265241	synonymous_variant	p.Arg245Arg
T/C	71265275	downstream_gene_variant
G/T	71265281	downstream_gene_variant
A/C	71265288	downstream_gene_variant
G/A	71265406	synonymous_variant	p.Leu220Leu
T/G	71265440	synonymous_variant	p.Val208Val
T/C	71265538	downstream_gene_variant
A/T	71265667	synonymous_variant	p.Leu190Leu
C/A	71265799	downstream_gene_variant
C/T	71265935	downstream_gene_variant
A/C	71266732	missense_variant	p.Leu44Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04908.1

MEQASKKQISRSFRPLYFFFFFLLFSFLYVVTCAERIFLKHQVLTNYTFALFTGIYKPAEFWQLEDHIPQPTKRRHRSCVFTLKEMEEATCSFNDDNLLGKGGFGRVYRGNLKSGEVVAIKKMELPAMKAAEGEREFRVEVDILSRLDHPNLVSLIGYCADGKHRFLISDFGLAKLMPEGQETHVTVRVLGTFGYFDPEYTSTGKLTVQSDVYAFGVVLLELLTGRPALDLNQGPNDQNLVLQVRHLLKERKKLRKVIDAEMARNSYTIESIFMFANLASRCVHAESNERPSMVDCVKEIQMIIHTNSKGLGMVRHSFRMV*

CDS Sequence:
>Vu_04908.1

Promoter Sequence:
>Vu_04908::LG1:71266861-71268861(-)

TACATGCATTAATTTTCCTTTTATGACTAGAACTCTCTAAATATGTCACTTCAACTATTAGAAGATATCCTGAGTAGTGAGTTGTTTATATTAGATGTGTAAATAGGTTTTGACTGTTTTTGATACTGGTTTTCACAATAGCATTGAATCTGTGTTGTTATTAAGTTGAATCTTTTTTGAAAAGTTGGATAAATTGTGATAACCATTGTGACTCTTTAAGAATAAAAGTGATATGGTTAATTAAAAATCGATAATGGTCTTGATACATATTTCAATTAAGTACATAAGCCATTATACTATTAAAAATTTAATACTTTAATGTCATCAAAATTATTAGTGTGGTTGAGAATGGAGTATGTAAACAAGAGTCATCCAGTTGCACTATACTATCTAGTTCTAACCAAAATTAGACAATTCACTATCATAATTAATTATTTGTAATACAAAGTTAGATAAAGGAGTCCAATTAAAAATAAATATATTAAAGAACTCAATTAAAAAAAACTGAAAGAACTAATTGAGTCAAATAGTTTAAAACCCACTCTCACCTAAATTTAAATAGTTACCAACTATAATTTATAAAGTTAATAATATAAACTAATGAATTTGAAGATAAAATTATTTATTTATGACTCATACCAAATATGGATTTCATTTGGATACTGATTACAATAATATTATATATATATATATATATATATATATATATATATATAATGTTTTTCTTTTTTTTTTCAAGGTACTATAAAAGAAGTGTAGAGTAGAAGTTGGAAATGAATATACAAATAAATGATTTATTTTGGAGTTTTTATGATGTAAAGGATCTCACAAAAGTGTAACTTTAAAAAATAAAATAAAAAAGAAAGGGAAAGCAACTTCTGACCCTGTTTTTTTTTCCTTTCCTTCATTTTCTTATCTCTTCTTCCTCTTCTTTCTTCTCCACGTCCCAAAGTAAGTCCTGTGAAACACAATTGAGGAAAATGGAATGCGAGAAACCAGATCACTTAAACTAAGATCAAGTTCCTAGTTCCCTTTTGACCAAAAGAGAGAACTGAAAAGAAGAAAATATCATCTCTTTATTTTTCATTGCCTCACAAACTAATAAATGCTTGACTTTTAGAGAGCTTATTTCACACAAATGTGTTGCTTGCAAATATGATAGGTATTTTTTTCTTATCAAATATAGAGTACATATACTATATTTCAGAAGAAGAAAAATTCAGTTGGAAGCCTACATTAACAGATTAGGAGAGATATACTATTATTCATGAAGAAAATGAAAATCTAAGTCAATTGTTGATGATGATAGACATGAATAGTGAGAATGACGGTTACACCACACTAGAGAAATATTTGGGAGCAATATTTATGACGAAGACTGAAGAGAGCAACTGAAAAGGACCACCCAACCCCCCAATGTATTTTCAAGCTGTATAAACAAGTAAAACGTAAAATTGATGAAAATGGAGAATGAGGGTGTGGTTTCCATTTCCTTGTCAGAGCAAGCACCCCACCACCACTTCCCAACCAAAAGACAAGCAAACACTGTCTACTTTTCTTTTCTCAGCTTTCTCCTTTCCTTAAAGTACATCTCTCTCTCCTTTTGTTGTCTGCTCCACAAAATCTATGTTGTTGTAGGGTGTGTTATTCGGTATTCTTCTCATGTAATTCCACTTGCTCCATGCTTACTCCACTCATGATTCCTTACTATGAAAATACTTTTATATGGTAAAGGCTCCCTCAAATGCGTGCCAAGTACTATTCCAATGCGATTCACTTCATTCATGCATGGTTCTTCTTGAGGAAATCCACATGTTTCTCTGAGGGTGGCATGTCATGCACATAAGTTTTAAAGAACGGTTAAAGGTTGGATTTTCAGCCACAAGGTTAAGGTTTTTGGACACCCCACGTTCACATTTGCCACCTTTTTCTGCAATTTAAAACCTTGAACACAACATACAAGATAGGATCACCACCATGCCATTTGGTTTAGTCTCAGC

Gene Sequence:

>Vu_04908(-)

ATGGAACAAGCGTCGAAGAAGCAAATCTCAAGATCATTCAGACCCTTGTATTTCTTCTTCTTCTTCCTTTTGTTTAGTTTTTTGTATGTTGTCACTTGTGCTGAGCGTATCTTCTTGAAGCATCAAGTCTTAACAAATTACACATTCGCTCTCTTCACAGGGATTTATAAACCTGCAGAGTTTTGGCAGCTTGAAGATCATATACCACAACCAACAAAAAGGAGGCACAGATCATGTGTTTTCACACTCAAGGAGATGGAAGAGGCAACATGTTCATTCAATGATGATAATCTGCTTGGAAAAGGAGGATTTGGCAGGGTCTACAGAGGCAATTTGAAGTCAGGAGAGGTAATGACTTTCTGATAAAAGTTTATATGACAGAAAAGAGGTCATCTTATATGATTCTCAAAATTGTGTTGCTTGAGATGTAGCTTCTGTAAAGAAGACAGGCATATTTCTTATTATTTTTCTTCACAATACCATCATTGAATTCCAATAGCACATAGATTGAGTTATAGCAGCAGAGTAAAAAAATGACTTACGTTGTGACTTAGCTACAAAAAAATGCAGACTAATCACTTAAGCATTTTAATCTGAAGGTTGTAGCAATAAAAAAAATGGAGCTGCCAGCAATGAAAGCAGCAGAGGGGGAGCGTGAATTCCGTGTAGAGGTTGACATATTAAGCAGACTTGACCACCCAAATCTTGTTTCTTTGATAGGATACTGTGCTGATGGGAAGCACAGGTTCCTGGTTTATGAATATATGCATAATGGGAACCTGCAACATCATTTGAACGGTTAGTAATGTACCCCCAAATCCATGCTTTTGTGGAAATTTCCTACATCCATGTTCTGTTAATCAGTGCCTAATTTTAGGAATTGGAGAAAGAAAAATGGATTGGCCTGTGAGACTCAAAGTGGCACTGGGAGCTGCAAAAGGGCTTGCTTACCTTCATTCAAGTTCTTGTCTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATGTTCTTTTAGACGCCAATTTTGAAGCAAAGGTATGAGTAAACTTCCAGCAAGGACTTATTTTACATATAGCATAACATATGAAGCACTGAGGCAAAATGAACATACATCTTGTAGATATCTGATTTTGGGCTTGCCAAGCTGATGCCAGAAGGACAAGAGACACATGTGACAGTCAGAGTACTTGGTACCTTTGGTTATTTTGATCCAGAGTATACATCGGTATGTATATTTAAAGATAACAAGACTTATAAATTGGTTACAAATTGTTTAACCAGGACATATTTCTTAAAAACCATTCATCAAAAACTTATATGATTTTTATTATTTTACAACTCAAGTATTATTAAATGTTGAAGTGAAACTAACACATTGTTATGTTTTGGTGTGAGCAGACAGGAAAACTCACAGTACAAAGTGATGTGTATGCTTTTGGGGTTGTTCTTCTAGAGCTTCTCACAGGACGTCCAGCTTTAGATTTAAACCAGGGTCCAAATGATCAAAACCTAGTACTACAGGTACGCAACACAGTGGATAATGAAAAAAAAAACAAAAAACATAGACTTAAAAACTCTCCATCGTTTTAATTTAAGTACATTTATTCATAGGTGCGGCACTTACTGAAAGAGAGAAAGAAGCTTCGTAAGGTGATAGATGCAGAGATGGCTCGAAATTCTTACACCATTGAGTCTATATTCATGTTTGCAAATCTGGCTTCACGATGTGTTCATGCGGAGAGTAATGAGAGACCTTCAATGGTAGATTGTGTCAAAGAAATCCAAATGATTATCCATACCAATTCAAAGGGCTTGGGAATGGTTAGGCATAGCTTCAGAATGGTCTAA