Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04861	LG1	70163448	70165376	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	signal transduction
Cellular Component	located in	plasmodesma, plant-type cell wall, extracellular region, plant-type cell wall
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
A/T	70163738	synonymous_variant	p.Ile97Ile
A/G	70163948	synonymous_variant	p.Leu167Leu
G/T	70163954	synonymous_variant	p.Gly169Gly
T/A	70163955	missense_variant	p.Ser170Thr
A/G	70163958	missense_variant	p.Ile171Val
C/A	70164090	missense_variant	p.Leu215Ile
T/A	70164142	missense_variant	p.Leu232His
A/C	70164145	missense_variant	p.Asp233Ala
C/A	70164165	missense_variant	p.Arg240Ser
C/T	70164431	synonymous_variant	p.Thr328Thr
A/G	70164627	missense_variant	p.Met394Val
A/T	70164705	missense_variant	p.Thr420Ser
G/A	70165058	synonymous_variant	p.Glu537Glu
C/T	70165149	synonymous_variant	p.Leu568Leu
A/T	70165189	missense_variant	p.Glu581Val
G/A	70165203	missense_variant	p.Gly586Ser
C/T	70165285	missense_variant	p.Pro613Leu
T/C	70165304	synonymous_variant	p.Ile619Ile
C/A	70165327	missense_variant	p.Ser627Tyr
G/T	70165352	missense_variant	p.Lys635Asn
G/A	70165360	missense_variant	p.Gly638Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04861.1

MNHQLLQVVALLTLIAFGGTSWTIEACSPIDLEALMSFKNGIQKDTSGRLAKWIGASCCKWEGIICENATSRVIQINLPGFISTDTDLFQTQMIGRISPSITLLTSLEIIDLGGLVGLSGAIPNTIGLQLPKLQKLYLYGNNLTGPIPESIGQFPNLQDLALQENKLWGSIPMSLGSLKSLKRLLLYSNKLSGIIPYSLGNLINLAELDAHDNALVGNIPNSVGEMKALTKLDLSNNLLRGKMPSSLTNLTAISVLYLNTNSLEGTIAFPSRSGEMSSLGFLRLHNNLLVGNIPSNIGYLVSLQRLSLSNNKLEGVLPSSLGNLVSLTELYLSGNFLSDQIPKSLGQLSRLIMLNISRNLIEGPLPQELSSLQNLQTLDLSFNHLKLSSIPKWMANMSSLSNIYLAGCGIQGQIPDFFQTTNSPIQELDLSVNILSGSIPSWIGRLSQLYLLNLSRNSLYSDIPDSFRNLQDLGVLDLHSNRLTGSIAPVFDIEQGIFGGSLKFVDLSENSFSSGIEEISGGQHSIQFLNLSHNHLEGRLPNSIGRLNSLKSLDLSFNELGSNMPEVLANLTSLEILKLQENHFTGKIPNGFLKLLKLKELNVSNNHLEGEIPEGKPLIDFPESSYSGNKGLCGKPLGPCKL*

CDS Sequence:
>Vu_04861.1

ATGAATCATCAGCTGCTGCAGGTAGTTGCACTGCTGACACTCATAGCATTTGGAGGCACAAGTTGGACCATAGAAGCCTGCAGCCCCATTGACCTGGAAGCTTTGATGAGCTTCAAGAATGGAATTCAAAAGGACACATCTGGTCGCTTAGCTAAGTGGATTGGTGCGAGCTGCTGCAAGTGGGAAGGTATTATCTGTGAAAATGCAACCTCTAGAGTGATACAGATCAATCTCCCAGGATTTATTTCCACAGATACAGATTTATTTCAAACACAAATGATAGGGCGGATATCTCCTTCCATAACACTCCTCACCTCCCTTGAAATCATTGATCTTGGTGGTTTAGTTGGTCTTAGTGGAGCTATTCCAAACACCATTGGTTTGCAGCTGCCAAAGCTCCAAAAGCTCTACCTTTATGGCAACAATTTAACTGGTCCAATACCAGAAAGCATTGGACAGTTTCCAAACCTCCAAGACCTAGCTCTGCAGGAAAATAAGCTATGGGGGTCTATTCCTATGAGCCTTGGAAGCCTTAAAAGTCTCAAAAGGTTGCTGCTTTATTCAAATAAATTATCAGGTATAATACCATACTCACTTGGGAATTTGATAAATTTGGCAGAATTGGATGCTCATGACAATGCTCTTGTGGGTAATATACCCAATAGTGTTGGTGAGATGAAGGCTTTGACAAAGCTTGATCTTTCAAACAATTTGCTACGCGGGAAGATGCCTTCTTCATTAACCAATTTAACTGCCATTTCAGTTTTGTATCTGAACACCAATTCTCTTGAGGGAACCATAGCATTTCCTTCAAGATCTGGTGAAATGTCTTCTCTCGGCTTCTTAAGACTCCATAACAATCTCCTTGTTGGAAATATACCTTCCAATATTGGCTATTTGGTATCTCTTCAAAGACTTTCACTATCAAACAACAAACTTGAAGGAGTACTGCCGTCTAGTTTAGGAAATTTGGTATCACTGACCGAGTTATATCTCAGTGGTAACTTCTTGTCCGATCAAATACCAAAATCACTAGGCCAACTTTCTCGGCTCATAATGTTGAACATCTCTAGAAATTTGATTGAAGGACCATTACCTCAGGAGTTATCTTCCCTTCAAAATCTTCAAACACTTGATCTTTCTTTCAACCATCTGAAACTCTCTTCCATTCCAAAATGGATGGCAAACATGTCATCACTTTCCAACATTTACTTGGCTGGTTGTGGAATCCAGGGCCAAATTCCAGATTTTTTCCAAACAACAAATAGTCCAATACAGGAACTGGACTTGTCAGTAAACATTCTCAGTGGAAGCATACCATCATGGATAGGACGCCTCAGTCAACTCTACTTGTTAAATCTCTCTAGGAACTCTCTTTATTCAGACATCCCTGATTCCTTTAGAAATTTGCAAGATCTTGGTGTCCTTGATCTTCACTCAAATAGACTAACAGGTTCCATAGCTCCAGTATTTGATATAGAACAAGGTATTTTCGGGGGTTCACTGAAATTTGTCGATCTTTCAGAAAACAGCTTCTCAAGTGGTATTGAGGAAATTTCTGGAGGGCAACATAGTATTCAGTTTCTGAATTTGTCTCATAACCATCTGGAGGGTAGGTTACCAAATTCAATTGGGAGATTGAATTCACTTAAGAGTTTGGATTTGAGCTTCAACGAATTAGGCTCCAACATGCCAGAAGTGCTGGCAAATTTAACTTCATTGGAGATATTGAAGCTACAGGAAAATCACTTCACCGGTAAAATTCCAAACGGATTTCTCAAGTTGTTGAAGCTAAAGGAATTAAACGTATCTAACAATCATCTTGAAGGGGAAATTCCAGAGGGCAAACCTTTGATTGACTTTCCTGAGAGTTCATATTCTGGAAATAAAGGGTTATGTGGAAAGCCTCTCGGTCCTTGTAAACTTTGA

Promoter Sequence:
>Vu_04861::LG1:70161448-70163448(+)

GATGGTAATAAAGTTAGAAAAATACAATAGTTGTATTTGTAACATTGGGGTGAGCAAAAACACAGACACTAATATGCTTTATGTATAATATTGAAAAATTCATATAGAAAATATGAACCCAACTCATGTAAAATAAAGTAACATACTATAGCACAAATTCATTTAATAACATATTATAAAAATAAAATAATCATAAAGTAAACTTTTATATTTATAAAAAAAATATTAAATGTGTATAAAAAAGTTTTACGCTTCGAAATATCGTTATTCTATAAGATATTAAGGTTACCTTTTATCTAAAATTTTAAAACAATTAATTTATGATCTCTTCTTTATATATTACTTAACTTTATACTTTAATTATACGCTAAGATTTAAGTTTACACTTAAATTTTCTATCATATAAGCATATTCACCACATAAAGAGTGCAGTTAGGAATTTAATGCATATCTTATAGTTTAAGACAATGGACAGAGATGAGTCCTTGAAGTGTACAAAATTTGCAATAAAAGTACACAAAGGAAGAATAGTATAAAATGATGAAAGTTGAATAACTTCTAAATTGCACAACCACCAACAAGTTGAATCCTAAGCTTGCTGTTTGGTAGCCTTTTGACAACTTTGAGAGAATCATGCCACAAAAGCTGATTTTTACAGTGCCTTTATATAAATTTTATTAATTTAGGATGCATTACTATTATTATTATTATTACTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATAAAGTAAAGGTTTTATAAAATAGACATTGATATAATAAGTTAATAACACTTGGACGTTTGAGGTTTTTATCTGTTACGATGTTATTGTTAGAATTTTAAGTATAAGTCTAAGTTTCACGTTGGGTAAGTAAACACCTTTCATTAATTCATTTTTTAAGATTTTGGATAGAAAATAATATTAATCTCTTATATAACTACGCTTTGATTTTATTGATGTTGTATCTTTGGAACGAGTCTCCTCTCCCATCAATCCAACTCTTTTAAAGTCTACATTAAAATTATGACTCTAAGTGGACAATATGATACAAACTCAAGACACAACAATATATAGTCAACATGATAGTTTTAAATCTCAGATTAAGGTTTATATATCCACCTAAACAAAGTTATTAAATATAACAATTTTCGTATGACAACTTAACAAAAATAATATTAAAACGAATTATTTAATTAAATGGTATTTACTAAGAAATAAGGAGATGAAGTATATCTCTTAAAGTAAGAACAAATAATTCAATCCTACTATAACAAGCTTTACAAAAAAAAGAAAAGTGATAAAAGTCTTGAAATATTTACAATATAAGTTGTCTCTTTCACTCTTTTAATAATAGGTGTTTTTTATATAATAGGGGTATCTGAGAAGAGTATGGCAAAAACATAGGGACTGGTTGAATCTCTTGACTTATATTCAAACTATATTGAAGAAGTGCTAAAAAACATTAATTGTTACAAAGATAAAAGATGTCTGATAGGAGCACAACATATTTCACAAGTGTCATGTTCCAGCAGTATCTGACATGTTGACATACGATATTGGAGAAGTATCTCTACTTTATATCATAACTGCAATGCCAAACTCAAGTTGATTCCCCCCAAAAACTCAGGTAAAATTGGATCCTAACATTTGATTTTAGAAATGTAGGAGTGGTTGTAAGGGACGAATTCAAGTCACTTATCCAGATAATCAAATGAGATGGGCCAGTCTTTGAATTAAATGGCCACAAGCATTATTAAGCACATAATGACACAGACAAATATTCTTTTCATATTATAAAAATATTTAAAGGGAAAAGGTGATCTAAAAAGAAAAAGTTAGATCTCTGAGAAGAACTAGCTTTTTTTATCTGTGCCTTATGATCTATTCTCAAGGTGAAACCCAAACCAACAATCTTAAGTACATTTTCAGTTGCAAGAGATCACTCCAAAAGAACCAACTTCATTTGCTAGTAAAAATA

Gene Sequence:

>Vu_04861(+)