Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04772	LG1	68509661	68510770	PREDICTED: zinc-finger homeodomain protein 11-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to water deprivation, response to water deprivation, positive regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to water deprivation, regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component	is active in	nucleus
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	protein binding, protein binding, DNA-binding transcription factor activity, protein binding, DNA binding, protein binding, transcription cis-regulatory region binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, transcription cis-regulatory region binding, DNA binding, protein homodimerization activity, protein homodimerization activity, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding

SNP	Position	Effect	Amino acid change
T/A	68509928	missense_variant	p.Ser90Thr

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04772.1

MDLTSSCTHTIQTFDADTKTTPPVNPTNNTTPKSLSFTNGTPKRHPSTTAAPPPQPPSMVVTYKECLKNHAASLGGHALDGCGEFMPSSSTNPTDPRSLKCAACGCHRNFHRRDPQEHSNLNNNNNIHGANPNTAATTNNNPTFLSCIYTPSAPAPISQRAMSQSTSPSLSSSPSHSPSPMSSPSPPPLSHVPPYHASAPHMLLALGTGYSTPSDERPHHRGLTFSSVMLKSENPKKRYRTKFSKEQKEKMQNFSEKLGWRMQKGDDGLVQQFCNDIGVSRGVFKVWMHNNKNTFRRRLDQGENANPNANANSPQSIGDHDDGNNTSGGGGFDSDINNPYNPSSNNNDIHMNEGDGCGNVHVSLNGLSS*

CDS Sequence:
>Vu_04772.1

ATGGACCTGACCTCCAGCTGTACCCACACAATACAAACCTTCGATGCTGATACTAAGACCACACCACCCGTCAACCCCACCAATAATACCACCCCAAAGTCTCTATCTTTCACCAACGGCACCCCAAAGCGCCACCCCTCCACCACCGCCGCTCCACCGCCTCAACCACCCTCCATGGTCGTTACCTACAAAGAATGCCTCAAAAACCACGCCGCCAGCCTAGGTGGCCATGCACTTGATGGCTGTGGCGAGTTCATGCCTTCCTCCTCCACCAACCCCACCGATCCTCGCTCCCTCAAGTGCGCCGCCTGTGGCTGCCATCGCAACTTCCACCGCCGTGATCCTCAGGAACACAGTAACCTCAACAACAACAACAACATTCACGGCGCCAACCCCAACACCGCCGCCACCACGAACAATAACCCGACTTTCCTAAGCTGCATCTACACCCCTTCGGCACCGGCACCAATCTCTCAGCGAGCCATGAGCCAAAGCACGAGTCCCAGCCTGAGTTCGAGCCCGAGCCACAGTCCGAGCCCAATGTCAAGCCCCTCACCTCCTCCACTCTCCCACGTGCCACCGTACCACGCTTCGGCACCCCACATGCTTTTAGCCCTCGGCACTGGCTACTCTACTCCCTCCGATGAACGCCCCCACCACCGAGGCCTAACCTTTTCGAGCGTGATGTTGAAGAGCGAGAACCCGAAGAAGAGGTACAGGACCAAGTTCAGCAAGGAGCAGAAGGAGAAGATGCAAAACTTCTCTGAGAAACTGGGGTGGAGAATGCAGAAAGGGGATGATGGATTGGTCCAGCAATTCTGCAATGACATTGGGGTCTCTAGAGGGGTCTTCAAGGTGTGGATGCACAACAACAAGAACACCTTTAGGAGAAGATTGGATCAAGGGGAAAATGCAAATCCAAACGCAAATGCAAATTCTCCTCAAAGTATCGGAGATCATGATGACGGCAATAACACCAGTGGTGGAGGTGGATTTGATAGTGATATCAACAACCCCTACAACCCAAGTAGCAACAACAATGACATTCACATGAATGAAGGAGATGGATGTGGCAATGTTCATGTCTCTCTTAATGGACTGTCATCTTAG

Promoter Sequence:
>Vu_04772::LG1:68507661-68509661(+)

ACTTTATACATTTTTTATTTATTCTTTATAATATAGATGACTACCAATTCTATAAATTGCTTTTTCTTCACAAATTACATGTATTTTCCTTTTCTAAGAAAACGATCATTCTTAAGTTAACATTATTATTGTTCGACATCAAATTAGTGCACATATGGTGATGGGAATATTATTTATTTTTTTGGAATCTCAAACTCTTTTATGAAAAAAGTATATTTAAATTGTCATTTTATTTATGGATTGAGATTAAGGATAATTTAAATTTATATATATTTTCAATTTTTATGAAAAATTTTAAAGATAAAATTGTGAAGAGAATTCAGACTTAAAAAAATTAATATCTTAAAAGTATTAATCTTAATGATTTAATCATAATATACTTTAGATCAAAACAATTATGCATGATAAAATAATTTCTAAACAAATTGATACAGTATATATATCTAAAAATCGAAATAACCAGGTAAACTTAAATTAATTCACTTATAATGTATGAACCGATCTAAAAAATAATTTTAATGATATTTTAAAAGAAATTATTAATTTTAATGATTCAATCATAGTATACTTTAGATCAAGACAATTTTGCATGATAAAATAATTTATAAACAAATTGATATATATCTAGAAATCGAAATAACTAGTTAAACTTAACTTAATTCACTTATAATGTATAAACCGATTTAAAAGATAATTTTAGATAAGGTATTTTTTGTTAATTTTTAAAATATGATATACATATTTTAAAATAATAAAAAGAATGATACACACGAGCATCTACAACTTTTCGTAAAATTTATAATTTGGTCATTTATTTAAAGTTACAATTTTATGTTTGGCATGCATATAACTTTATGTTATATCGATTCTTCATTTCATTTAATTTGTTTTAATAGACATTACTGTAGGTTATTTATTAAGATATAATTAGTATGATATAGTTGACTAAAATGATGATATTTAAATTATAGTAGGAGAGCGAAAGAATGGTATGTTTTATTATTGAATTATGAATGGTGAAATTGAGGGAGGTGGGAAGATTAAAATAAAAAAAGGGATGAGTGTGTGGATAGAAAGTTGGAAAATGTGTGTGAAAGTGGTTTTTGCGTGAGCATGTGAAAAGATGAGGTAAGGTTTTGTTGGGAAGGAGCAGGAAAGTGGTGAGTTTATGAAAGGAAAACCAGAATTGATGTGTTTTGTATTTGCAGAGAGCAGGGGAGTGAGTTGGCCCAGCTGTGCCTCAAATCTCCTTCAATTCTCATATCCGTACCACACCATCTTTCAATTCTCATCTCTCAATCACCAACCTCAACCAATATATTCTTGCCTAATATTTTCAGACAAATTTATTGCCCCCAACTAACACATCTCATTCATGTGCTAACCATTATACACACTTCATTGCCACTTACTTCAAAATATAACACTTTTTATTCACTTTCATTTTTCTATTAACAATTATCTAATTAAAACTCATTATTAATATAACTTTTAAATTACTTATTTCATATCTTATATAATCCGTTTTAATTACATCATAATCAAAAACACTTTACACACTTAATGCCTTCTACATTATTTACTGCTTTAAAACATATATAAAGTTATCAACGTTCATAAACTCCTTTGTTTATATCTAATTTTTATCTTTTTCTATTGTTTTTGTTTGTATTCTCTTCTCAAATCATTAGTGGTTGAGATTTTGGACCCTATTGTGTTGTGTATCCCTCTTTCTGCTGGCAACCCCATTTAAACCTCAGATTTTGTCATCACTTCTCATTATAACCATCATCATCGCCATTTCTACCTGCATCATCATCACTCTATTTCCTCCACACACACACCATTAATCCCTTCACTTGGTTTTTTTGTTTTTTTTCCTCTTTCCCCTTCTAACACAACAATTCATCCTTTGACAACCAGTGCTTAAAGCTTGTCAAAAACCCTAATCTCTCCCTCTCCCTCCTCCTGTTATATCACTCTTGAAGAGACAACAGACA

Gene Sequence:

>Vu_04772(+)