Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_04718	LG1	67438984	67440721	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	67438987	missense_variant	p.Asn2Asp
T/G	67438989	missense_variant	p.Asn2Lys
T/A	67438991	missense_variant	p.Val3Glu
A/G	67439005	missense_variant	p.Asn8Asp
G/T	67439012	missense_variant	p.Gly10Val
A/G	67439020	missense_variant	p.Met13Val
G/T	67439037	synonymous_variant	p.Thr18Thr
G/A	67439038	missense_variant	p.Ala19Thr
C/T	67439067	synonymous_variant	p.Phe28Phe
G/A	67439077	missense_variant	p.Gly32Arg
C/T	67439088	synonymous_variant	p.Ser35Ser
G/A	67439125	missense_variant	p.Ala48Thr
A/T	67439147	missense_variant	p.Asn55Ile
G/T	67439160	synonymous_variant	p.Val59Val
G/A	67439162	missense_variant	p.Gly60Glu
T/C,*	67439167	missense_variant	p.Ser62Pro
A/G	67439188	missense_variant	p.Ile69Val
C/A	67439193	synonymous_variant	p.Leu70Leu
T/C	67439201	missense_variant	p.Met73Thr
A/G	67439538	missense_variant	p.Asp139Gly
C/T	67439558	stop_gained	p.Gln146*
A/G	67439597	missense_variant	p.Ile159Val
C/A	67439600	missense_variant	p.Gln160Lys
C/A	67439613	missense_variant	p.Pro164Gln
C/G	67439683	missense_variant	p.Cys187Trp
G/A	67439724	intron_variant
G/T	67439799	synonymous_variant	p.Gly195Gly
A/G	67439815	missense_variant	p.Thr201Ala
G/A	67439824	missense_variant	p.Ala204Thr
G/C	67439861	missense_variant	p.Trp216Ser
G/T	67439939	intron_variant
T/G	67440009	intron_variant
G/A	67440279	intron_variant
G/A	67440376	intron_variant
G/C	67440552	synonymous_variant	p.Leu232Leu
G/T	67440659	missense_variant	p.Arg268Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_04718.1

MNVAVKHNGGDHMNEPSTATSTQKWGIFFLFGSGSRTLVGLERDFQLAIKLQQTNGIKVGISTRKGNNILIKMRGHVKGRAHELAATPNCSLGPAGKLHGDEEKHKRMEAATCNKAVKRELQDTAVTDSVAGWNGEGSTTFDDGSSSCSLLHFKRQAATFKIHVQSWCSRDQRRGVCRGKDENGESLAYMVWGKEGEQHVPHTDSNSCMGKSHYHDLASSGKEGVDGQKEYFFCRKGRKYRNSIRPDRVTGSGFCKATSVDKLLYSQGGEGKGTKNYWMMHELTCCWEF*

CDS Sequence:
>Vu_04718.1

Promoter Sequence:
>Vu_04718::LG1:67436984-67438984(+)

CCGAATCGTATCAAGTAATATAAAATGGTAAGACCAAGTATCGTATCCCAAAGGACTCACAACACTAAACAATTATGTAATTGCTTAACCAATTAAAACTTAAGAACAATTTTTGGGGGTTTTGATTGCAAATGCAATAAAAATAAACATGAATGCAATTTGATCAATTAAGGCTAAACACTTGAATGGATGGATGAAGTTGAAAATATGAAATGAATATGTTGTTGGGGTTTAGATTTCACCAAGTTTAGTCTCATGTATATACGAATTCTACTTCTTCATTAATGTCAATGTCACTCTCTAAAATACTTAAAACCAGATTCCTCGGCGAAGAAAGCTTAATAATTAATTCTGAAGAACAGAACCTTAAGACAACCAGAACTCATACCACCATTCCCGAGCAATACTGCTTCTGGGAATAATTTTCTGGGTCATGAATTGTAAGATACCTTCCGGTAATCATGCAAATAATACATCATGCTAATGAATGAGTTAAATAGAGCAAGCATTATGCAAAGAAGAATTACTCTAACAATTAATGAACGAAGCATATATAATTAAGAGTCAATTCAAAATACATGAGAGTTCAAGAGGTTACATCTTTTCCCCAACAACAAAAAAGGTTTAGTTCTCCATCATCATGGAGAAACTAGATGAACAATGAAAGAAGAAAAAAGATAGAAAAACCCTAGAAAGAGAAGAGGAGAGTTGTCACATCCCCAAATCTACCCTCAAGGAAAAGAAGAGCTGCCACATCCCCAAAATCTACCCCCAAGGGGTGAAAAATGTGTTTTTGTGCTCAAGCCATCAAAAGATACAATCCCTAGGACGTCCAAGTCCTTAAATAGAAGATAGAAATAACAGAAATCAGGTCCAAGCCAATAAAACTGGTGCTCAGCGCCCTAAGTGGGGCGCCCAGCGTGGTACGGGTCAAAACTGGCGCTCAGCGCCCTAGAAGGGCGCCCGGGCGTGACTTTTTTGCATTATGGTTGACTTTTCTGCACTCTGGTTGACTTTTATAAACTTTGGGACATTGATTTATGTTGTTTGAGATTTCATGGTATAACATCTACTGATGGATGCTAGGTGGTTGAGTATCTACTGAAGGATACTAGGTTTGTTTACACCTACTGATGGGTGTTGATAACACTACAAAAAAGAAGGGCATTACCGAAGGCCAGAAGCCCTCGGAAACAGCCCAAAACCGTCGGTAAAAGGTAATTACCGAAGGCTTATCGACGGCCAAAGAGCCCTCGGTAAATCCCTTGTCGCTAACATTTACCGAGGGCTTTTGTCCTTCGGTAATTACCGAGGGCCAAAAGCCTTCGGTAATTACCGAATAGCTGAAAAAAAAAGTATAAACTCAAAAGCCTTCAATTTTCGCACAGTGCTGTGTGAATGTTGTGTCAACTTGTGTGTTTTCGTTCGAGTTCAATTCTTATCCGTTTTCCATGCAATTTTTTTTCATAGTTTCGTCTGGATGTCTATTTTAACGTATAGTTTTTACTTTGTTCAAATTCGTTCTGTGCTATTCCCAGTATTTTTTTACTCCCCTATGTCAGTCCAGTGATTACTGTTTGAGTGACTTCTAATCTGTTTGCATTGTTTGCTTGTTCTTTGGTACTTGTGGTGGCTGGAATTGATCATTGGACGATGCTAAGACCTCCCAACACTCTTAAGCAAGTCCTTCATTTCTTAAATTTTAAGAAGTAATATTGGCTTGCCATCATTACACCTCACGGCCATAATAGCTATTACCCATTGGAAAATTCATTTTGGCAAAGCAATTAAAGCTCAGGTTTTAGAGAATTTATTGAAGAATGAAGTGTGAATTTTATAATGGGGAGACAACTCACGACACATTTGAATTGAAGTAAGGTCCAATATTTGCTGAAAAGTCACGCACATCCAATTACAATTCATTTTGGCAAGTATCCAGCATGGAACAAAAATGGGAGTGCCACCTAGGATTGAAGAATGTTTATTTGGCTTATGAGAAA

Gene Sequence:

>Vu_04718(+)

ATGAATGTGGCCGTGAAGCATAATGGAGGGGACCACATGAATGAACCAAGCACGGCAACCAGTACACAAAAATGGGGAATCTTCTTTCTCTTTGGAAGTGGGAGCCGCACCCTTGTTGGCTTGGAACGTGATTTCCAATTGGCCATTAAATTGCAGCAAACAAATGGAATAAAAGTGGGGATCTCCACTAGAAAAGGGAATAATATTCTCATAAAGATGAGGGGTCACGTGAAGGGAAGAGCTCACGGTACTTATACAAGTCCAAATATTATATGACCCACAAAGGAATTAATTTTGGTGGTGCACTTGTGAAGGGGCTGCACTTCCACGTTCGCAAATGAGAAGAGGTATTACGGCATGCTTGAGAGGCTGCACACCGTCCAGAATTGGCAGCAACACCCAATTGCAGCCTCGGTCCAGCAGGAAAGCTGCACGGTGATGAAGAAAAACACAAACGGATGGAGGCAGCCACCTGCAACAAGGCCGTGAAGAGAGAGCTCCAAGATACTGCTGTAACTGATTCAGTAGCTGGCTGGAATGGAGAAGGAAGCACGACGTTTGATGATGGATCCAGCAGCTGCTCCCTGCTACACTTCAAGCGTCAAGCAGCAACATTCAAGATACACGTCCAGAGTTGGTGTTCACGTGATCAGCGGAGAGGCGTGTGCAGAGGGAAGGATGAAAATGGAGAGTCCCTTGCTTAGTTTTGGTACGTCCAGGAGGTGCATTGGAGTAAAAGTGCTAGGAGACAAAACTTGGGCAGCACCAGTTTCTTGCTTTTAAAATATTGAAGCATGGTGTGGGGAAAAGAAGGGGAGCAGCACGTCCCACACACAGACAGCAACAGCTGTATGGGCAAATCGCACTACCATGATTTGGCTTCAAGTGGAAAAGAAGGAGTGGATGGTATTTAAAAAGTAGAGGCCATGAAAGAGGGGTGTTCCAGGAGAGAGGGGGTGACGGCCTGGGAGAGGAGTTGATGTTTTGATTTTCAAGTCTTACCATAGTTGGTCTCACACAGGACATTAAGCGTAATGAAAATCCTTACATTTGAGCTACCTTTTCATAGGTTCTTTTAATCAAGAACCTGTGAATAGCACTAGAAACATGACACAAAACAGATCCTCTGAATTATACAGCCTCCTTTTATTGCAAAAGAATCAAGAAAAAGGTGAATACAAGGTACTCAGAGAGCTTAACCTCTCCCCAAAGAACTCCAATAGTTCTTGCACAATCAACAACACTCCAAAAACTCCCTCACATACAACTCGTTCCCCCCTTTATGGGTGAAAAATGAAGTGCAGCTGCCACATTTTCTAAGTAAATGCCACGACCATTGCTTGGAATCTTTCAAGAAATAAATCAAATAGAAAAGAGGGGCCACCACCCACGGTTTTGGTTCAGAGCATTTAGTTTGCTTGGCACAATGTGCACGGTCCAAATCCAAATTGAAAAGCATGCATATGACAAAAATATGGGCTGCCACTAAGAGAATATTATTCTTAAAAAGTGAAAAGCATGACAATGAAGGGACCACGGGAGTGCAGGACAGAAGGAGTACTTTTTCTGCAGAAAAGGAAGGAAGTATAGGAATAGCATCAGGCCTGATAGAGTGACTGGGTCTGGGTTCTGCAAAGCAACCAGCGTAGACAAACTACTGTACTCACAAGGTGGAGAAGGCAAAGGCACCAAAAACTATTGGATGATGCATGAGTTGACTTGTTGCTGGGAGTTTTAG