Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04710 LG1 67114792 67116519 PREDICTED: WUSCHEL-related homeobox 9-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   embryo development ending in seed dormancy, positive regulation of cell population proliferation, embryo development ending in seed dormancy, response to cytokinin, response to cytokinin, regulation of meristem growth, regulation of meristem growth, embryo development ending in seed dormancy, embryo development ending in seed dormancy, embryo development ending in seed dormancy
Cellular Component   located in   cytoplasm, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
A/G 67114905 synonymous_variant p.Arg38Arg
A/G 67114983 intron_variant
C/T 67115009 intron_variant
T/C 67115087 intron_variant
T/G 67115261 stop_lost p.Ter80Glyext*?
G/T 67115353 missense_variant p.Glu110Asp
A/G,* 67115397 missense_variant p.His125Arg
A/C 67115516 missense_variant p.Ile165Leu
T/A 67115534 missense_variant p.Cys171Ser
T/A 67115558 missense_variant p.Phe179Ile
C/G 67115709 stop_gained p.Ser229*
A/T 67115753 stop_gained p.Lys244*
A/G 67115762 missense_variant p.Thr247Ala
T/A 67115771 stop_lost p.Ter250Lysext*?
T/A 67115968 intron_variant
A/T 67116016 intron_variant
G/A 67116096 intron_variant
G/T 67116233 missense_variant p.Gly304Cys
A/T 67116328 missense_variant p.Arg335Ser
C/A 67116363 missense_variant p.Pro347His
C/T 67116392 missense_variant p.Pro357Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04710.1
MSSSNKHWPSMFKSKPCNSHNQWQHGNNSSVLSTGCQRSPYTPGNEEKTPEPKSRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRVQLQEYGQVGDANVFYWFQNRKSRSKNKLRHIQNSKKHNTETQPNSLSLSQIIPPSTSSSSSDKSSSKELVHQNAISFGFSNVNDALPNSPTASVNQTYLQSHNYNNTALLPPAIESFSFPLHNNGQGVIVNDTITTHGFSLPQFSNNIMQSQPQCQPKVGPSSSLFLNEIMNQEKALKSMHRQQLSSHPTSSSTTTVAPAISTLPCPITQLQGVGGEVTADREKCIVFINDVAFEVMMGPFNVRQAFGDEAVLIHSSGPVPTDDWGITLHPLQHDIRK*


CDS Sequence:
>Vu_04710.1
ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGGCAACAACTCTTCTGTCCTGTCAACGGGATGCCAAAGAAGCCCTTATACTCCAGGAAATGAAGAGAAAACTCCAGAACCAAAGTCAAGATGGAATCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTATTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTCCGCCACATCCAAAACTCAAAGAAACACAACACAGAAACACAACCAAACTCACTTTCTCTCTCTCAAATCATACCACCTTCAACCTCATCCTCTTCCTCTGACAAATCCTCCTCAAAAGAATTAGTGCACCAAAATGCGATCTCCTTTGGATTCTCAAATGTCAATGATGCACTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTACAGTCTCACAACTACAATAACACCGCTTTGCTGCCACCAGCGATCGAGTCTTTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTAATAGTTAACGATACCATCACAACGCATGGGTTTTCTCTCCCTCAGTTCTCCAACAATATCATGCAATCTCAACCACAGTGTCAACCAAAGGTTGGACCCAGCAGTAGTCTTTTCCTCAACGAGATCATGAACCAGGAAAAGGCATTAAAATCAATGCACCGTCAACAACTTAGCTCCCATCCGACTTCATCTTCAACCACAACCGTTGCTCCCGCAATCTCAACTCTTCCATGTCCAATCACCCAGCTTCAAGGTGTTGGTGGTGAGGTTACAGCAGATAGAGAAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTCGGAGATGAAGCCGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGATGACTGGGGCATTACCCTCCACCCACTGCAGCATGATATAAGGAAGTGA


Promoter Sequence:
>Vu_04710::LG1:67112792-67114792(+)
CCAGCATCTTCATTGGCGCCACCCATGCATCCAACAACAACCACCATAGAACCCATTATCGCAAATCAAATGAACCCAAAATGAAAAAACAAATTCATGGAAAAACAGAGAAGAACCCTCATTCCAAGTTCAGAAACCCTAACATTCCCAATCTAAACCCTCATCCCCCACTTCGTAAACCCAAAACCCAAACCTGCAGGGAAGAACAAAATCCCTAACCACTCGCAAAACAAAGAAGAACCAAGAATTCCCCAAATCAATTTTGAAACGAAAATCATATATTCTAATTTACAAAAACCAGATAAGACAACAAAAACCCCCAAATTGAAATCTTCAATCGCGAGTCCTATTGCCGCAAAATCGCATGAGAACGGTGAGCTTCTCGCATCACGATTACGTCGGAGATCGAACTTTCGCGGAGGCACCGCCGTTGCAACCCTCACTGCGATGCGAGAAAGGAGTTTTCTCTCGTTTCTACGAAACTCCGATAGACCCACTATGGTCAATTGGACCATCGCAAGCTTCAGTTTTCCTCTGGTGGCGCAGGCGTGAGGAAGCATTTCCTCCTTGCATTCAGAAACCCTAAATTTTTGGGTGGGGAAAGGGCTACCACGTGGCAAGGCAGGTCAATAGTTAAATGACATGACATTCACTTATTGCACAACTGGACAGTGTGTCGTTAACTATTTAAACGCCGTCTGCAAAAATGATTAAATTGAACATAAATTACATTCTTTAGGACAATATTGAATAGAAAAGAAAAATTAGAATCATTTCGAATAAAACTGACAAAAATTGGGATCAAAATTGGTATTAAGCCTATAAACAAATAAGTTATTTTTTATTTTATTTAAAACATTTTCAATAAACGATTTATAGTATTGTTTAAAATTAAATAGCATCTCATAACTTTTTTTCCTTTTGTTTTCTTTAATAGAAGGAAAATTTCAATACTAGAAGAAACACAATAGTAAATAAAAAAAATTCACTTCCCCATCTACGCGAAATGGGTCAAACGACCATTTGATTTGCCTTAGTAAGTGTATAAGACTTAACCAAATGATTTAGCAATTTTAATAGTTTTAGGACTAACGTTATTTATTTTGTGGAATTTTTAAATTTTTTAATATAATTTTTAAAAATAACACAAATATACTACTCTTTTCAACAAAAACAGAAACGGAGTAGTAGTAAAGTTGAAGAGTTAAGTAATTATAGAAAAAGAGTGAGTAACGTTTTTTAGGAACTTTGGAAAAGCCTACGACATAAAGAGGAATTTGAGTCAAAACAGAGATATGTAACGCATAATAAATAGATCCCTCGAGTCAATCCAAAAACCCCGTTTCTTTGTTTGCCCAAAATAATGAAAATAAGTTCCAATTACTAACCCACCACCGCTTTCCAATCAAACACCAAACATCAAACATCACACCCTTTTCTTCACTTTGAAACCCCCGCCCCGTATTTATTCCTGCAACAACCTCTTCCATTACAATAATCTTTTCCCCTTCCCACCCCTTTTCTCTTCAATGGCCTACCACGTCTATTTCTGTCCATCTTTCCTTTGCTTCTAAAGAACCTCCACACACTCTAAAAGTGTAAGCAAAACCTAGGTGTACAAGGGAGATATATATGGTTTTCTTCTTCTTTTCTTCTTCCTTCTAGATTTTATATTTACACATATCATGAGATTCTTGCTGTCTATGTAGTTCATTTCGCATGCTTTCTTCTTTCTTTTGTTTCATTGCTTTAGATATTTTCTGTAAAAGATGTTACATGTCTGACTTGAAAGTGATACAGATAGATTTGTTTTTATTAATGAAGTATTATTTTTATGATTATTACTACTATTATCATTAGGATAGAATGCTGACAGACACAACTACGCTGGGTAAGTAGAAAGGCTATATAAGAAGAGATATGTTGCATACGTTGGCCTAGTGGATTCAGTTTCGTCCCTCATCAGCATCAACATCAGCATCAACATCAACATCACATCA


Gene Sequence:
>Vu_04710(+)
ATGTCTTCTTCCAATAAACACTGGCCAAGCATGTTCAAATCCAAGCCTTGCAATTCCCACAACCAATGGCAGCATGGCAACAACTCTTCTGTCCTGTCAACGGGATGCCAAAGAAGCCCTTATACTCCAGGTTCCTGTGATGCTTCAAAGATCACTTTTTTTTCAGACTAGATGATTACGCTCACCGTTTCATGGTGCAAAGAGATGTAAACAAAACCGGAACAGTAATAATATATATTCAAAAGATAACAATGCAATGCTTGACTACCCTATTCAAAACTGAATTCCAAAAATATAGTTTTTCTGAATTTCGTGTCTTTTGGATATTTAAGTATTTTGTTTTGTGGTTTGCAATTGTAGGAAATGAAGAGAAAACTCCAGAACCAAAGTCAAGATGGAATCCAAAACCCGAGCAAATTCGCATTCTAGAAGCCATCTTCAATTCTGGGATGGTGAATCCCCCAAGGGATGAGATAAGGAAGATCCGGGTGCAGTTGCAGGAGTATGGCCAAGTTGGTGATGCCAATGTGTTCTATTGGTTCCAGAATCGCAAATCCAGGAGCAAGAACAAGCTCCGCCACATCCAAAACTCAAAGAAACACAACACAGAAACACAACCAAACTCACTTTCTCTCTCTCAAATCATACCACCTTCAACCTCATCCTCTTCCTCTGACAAATCCTCCTCAAAAGAATTAGTGCACCAAAATGCGATCTCCTTTGGATTCTCAAATGTCAATGATGCACTGCCTAATTCTCCCACTGCTTCTGTGAATCAGACTTATTTACAGTCTCACAACTACAATAACACCGCTTTGCTGCCACCAGCGATCGAGTCTTTCTCCTTTCCTTTGCACAATAATGGTCAAGGTGTAATAGTTAACGATACCATCACAACGCATGGGTTTTCTCTCCCTCAGTTCTCCAACAATATCATGCAATCTCAACCACAGTGTCAACCAAAGGTTGGACCCAGCAGTAGTCTTTTCCTCAACGAGATCATGAACCAGGAAAAGGCATTAAAATCAATGCACCGTCAACAACTTAGCTCCCATCCGACTTCATCTTCAACCACAACCGTTGCTCCCGCAATCTCAACTCTTCCATGTCCAATCACCCAGCTTCAAGGTAATTTACATGTTGGAAATAAGCAAGTAATTGAAAAGGTTACACCGTTATTTTTCTAAATAAATTAAATTAAACACAAAAAAGAATAATTTTTTTAAAAATTTATAAGGAACATTAAGTTATAAAAGTTTCTTATGTGATGTAGAGCATATTTATTAGGTAGGGGCTAGTTCTGTGATTAGGGTATATGTGGTGTTGTGTTGATGTACATGGACGTGTGCATGGGTTGATTGCCTTAGGTAGGTTATTGTAAGTGGTGGTTTTCGACTCGCACATGAGAGATGATTCGATTTGTGTCAGGTGTTGGTGGTGAGGTTACAGCAGATAGAGAAAAATGTATAGTTTTCATTAACGATGTTGCATTTGAGGTAATGATGGGACCCTTCAACGTGCGCCAAGCCTTCGGAGATGAAGCCGTGCTTATCCACTCTTCCGGCCCTGTCCCCACCGATGACTGGGGCATTACCCTCCACCCACTGCAGCATGGTGCTTACTATTATCTGGTCTGGAGTTTTGTTAAACACTGCAACTTTTTTTCAAACCTTCATTTTAATCATCGTCTAAATGCTTTTTTCAATTTTTGCAGATATAAGGAAGTGA