Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04454 LG1 61861592 61863670 PREDICTED: MADS-box transcription factor 3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, positive regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, positive regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, RNA polymerase II-specific, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, protein dimerization activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/A 61862256 intron_variant
C/T 61862279 intron_variant
T/G 61862300 intron_variant
T/A 61862308 intron_variant
T/G 61862402 intron_variant
A/T 61862432 intron_variant
C/T 61862433 intron_variant
G/T 61863001 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04454.1
MGRGRIPMDLIEKEKARKTTFQKRKNGLMKKVYEFSTLCSVDVGVIIFASKFLDEPEIWPQDPRELKRVIQKYLNTTSDRRPKVYDVEEYFDERMKRIEGEISKVHKGKIQLIYPTWDDSYDTLEEEQLRMFVSILDAKLDACNQRMNMFKRDSKGKVIAESDNDEALVPYLAPTLGDSNSRCKLEKLDERIGVLQGSCARLDEGNEVDDGGSEEKR*


CDS Sequence:
>Vu_04454.1
ATGGGGCGTGGAAGGATACCCATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCTTCAAAGTTTCTGGATGAACCTGAAATATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGGATTGAAGGAGAGATTTCCAAAGTGCACAAAGGGAAGATCCAGCTCATTTATCCAACCTGGGATGACTCTTACGATACTCTTGAAGAGGAACAGTTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGTAATAGCAGAATCAGACAATGATGAAGCACTTGTTCCTTACTTGGCTCCAACTTTAGGTGATTCGAACTCGCGGTGTAAATTGGAGAAGCTTGATGAACGAATTGGGGTTTTGCAGGGTTCGTGTGCTAGATTGGACGAAGGTAATGAGGTGGATGATGGTGGTTCTGAGGAGAAGCGGTAG


Promoter Sequence:
>Vu_04454::LG1:61863670-61865670(-)
TTCGCAATACTTGGAAAAGCAGAAGAAATTTTATCTATTTAGTATTATTTTTTTTTTGTTAAAACTTTTATTAATTTCCATATAACTTATGAGAATATATATTAATAAAACATGTGTATGGTAAAGACATGTATATATGATCGCAGTTAGTTTTTCTAAAATGATTGGAACATCTGGACGAAAAGAGTCCAAAATCTCGTCCCAAAAATATTACTAAATTATTAACAATAGTTTTCTGTAAGCTTATTATTGGGAATACGACTGTGATCACTAATGAAAAAGATTTAAAATATTAATGTTTCCATTTATTTAAAGTGAGCTTTTCAAATTTTAGTATATATACATAATAGAAAGAGAGAATGTGACACAAATAACATGTAAAATCATAACATATTAAAATAGATCTGAAAGTTTTTTTAAATTTACAAATACTTTATATATTTAAATCAATAATAAACTAAATATGAAAGTTCTTTTAAATTTACAAATACTTTATATATATTTAAATAAATTTTGTGGTGACTAATGAAAATAAACGAGTTTCATCATAAATAATAAAGTAACCTAAAAATATCTCATTTTTATTTAAATTTCTAAAGTCATATTTCTCGTTATAATAATCAAATATTTACTTATAGTAAATTTTATCTTTTCATATTAATTATTATCATTGTATCTATTTATTTGTCACAAACAAATAAAATAATAAACATTTAAAACCAAACAATATAACTAAACAAATAAATAAGATCTTTATGTATAAATAAATATAAATATAAACAAGTAGAATTATGTGCAATTGAATATGTAAGATTTAATAAATAAATAAATAAAACAAGTACATGATTAAATACAATATAAAAGAATAATTAAATATGTATACGAAAATAAATACAAATAAACAAATTAATAGAATAAGTGTATGATGAGATATAAATATATTTGAATTGTAAGAGTCAAATAATAATTATATATATATATATATATATATATATATATATATATATATATATATATATAAATACTTACCAAATTTATTTTTTAGTTGACATTTTTTAATAAATATAGATCATGAATAAGAGTAAAATTGGTAAGGAAATATGTACATCAAAAACCAGTTATAAAATCGTTACAAATCATTTTTATTAATTTTATGAACAATTCTCTTTATCAATAGTCATAAAGAATAAAATGATTATATATATATATATATATATATATATATATATATATATATATATATATTTGTAAATGTTTTCTTAAGTGATAAAAGTTGTCATCAATATTATTTCTGAAAATTCACGTTGTTACTATATATATTACTCAATGTCCATCATTAGAATTATTCTAAATCTTTTACTTACCGGATACCATTAATTAACTTTAAAAGATTTAAGTCATTAAATATATTTATTTGTATAAATAAAATAATGAAAATATATTTCATATCCGGATTTTGTAATAATGGTTTATATTTTTTGAATTAATTAAGGATAATCCAACTATAATCCAAACCTATAAAACAAATTGAAAGGTAAAAAAAGGAAATTAATTAAAATCCCGATTATTATTTGATCAGAGATTAAGACAGCGCTCATTATGCTATCATGCCATATATGTATAGAAAGCAAAGAAAACCAGAGAAGCTTAAGAGATAACACAAACCAGACTTTCTTGAAGAAGTAAACGATTGCTCGAAAAAAGGAAAAAGGAAGATCAAAGAGGTATGTGCACTTGTACTTGAACAAAATAGTAAACTTTGAATCATGAAAATGTTAATGTTATTTATGTTGTATGCATTCATGCGAAAACTTTGGTTCTTTTTTGCTGCATATCTTCAGCCTAACACTGTCATCGCAACCAGAACATAGATGAATTTGCGTTGCAAAGAAACAATTTTGTTGTTGCAAAATGTTGTTCTATATTACTATTTGCGTATAAACTTTTGTGCAAACACTTGGATAGTGAATGTTGGCAATTGTTGTTGTGTGTGGCAGAAA


Gene Sequence:
>Vu_04454(-)
ATGGGGCGTGGAAGGATACCCATGGATCTGATCGAGAAAGAGAAGGCTCGAAAGACAACATTTCAGAAGAGAAAGAACGGATTAATGAAGAAAGTTTACGAGTTTTCAACACTTTGTTCAGTTGACGTTGGTGTGATTATCTTTGCTTCAAAGTTTCTGGATGAACCTGAAATATGGCCACAAGACCCAAGAGAGTTGAAACGTGTGATTCAGAAATATCTGAACACTACCAGTGATAGGCGTCCAAAGGTGTATGATGTGGAAGAGTATTTCGATGAAAGGATGAAAAGGATTGAAGGAGAGATTTCCAAAGTGCACAAAGGGAAGATCCAGCTCATTTATCCAACCTGGGATGACTCTTACGATACTCTTGAAGAGGAACAGTTGAGGATGTTTGTAAGCATTTTGGATGCTAAGCTTGATGCTTGTAATCAAAGGATGAACATGTTCAAACGAGATTCAAAGGGAAAAGTAATAGCAGAATCAGACAATGATGAAGCACTTGTTCCTTACTTGGCTCCAACTTTAGGTAATCACCTCAGTTTCATGCAGAACATGTCTCAAACACAGGTTTTTCCTACTAATGATAACAATCAAGTACCATTTTATCCATGTCAACTCAGTCAAAATTCTCTACCTTCTTTGTTTCAATTGGGTCAAAACTTTACCCAATTGATAGAAAAAAATATAGCAGTGGATTGGAATAATCAAGTTGGTACAAGTGATCACAGAATTGATACACAACAGGAGGATAGAACAAACAAAAACCAAAACCCATCATCGTGCTATTACGATGCAAATATTCAAACAATGCAGCCGTATAATAATGTTGCTTTGCAAACTCTTCCTGCTCAATTGCAGTGCGATGCAACATTCCAGAGCCTGTCAAATCGACCAGGTCCATCACAAGGATTTGAACCTAATGATGTTTCTAATATGCTTCAACCTCATTTTTTAAACTATATGCACAGAAGAAACTAGATCCTATTTATTTAGATATTTATTTTTCTCTTACAGAATAGTATGTTTGGATTTTAGTTTTTTTTTTCTGTTTTTTAGCAGTTCTTGCCTACAACAGTTATAACAATAATTTTGTATTAGATTCTTTTGATTTGTTTATTTAGAAAATTTTGGTGCAATGATTATTCCATGAAAATTGTGACATTTGTAGAATGAACTAGTATTTGTTAATTTGAATTATTATTAAATATTTTTTTATAATGCTTACAAATATATTGTATTAAGGTTGAAATTGACTAGACAAATAAATGATTTGGTGTAAAAAGAGTCATTATATATTATTTATAATAGATAATTCACTTTGAATTAATTGATTTTTTATAATTAAATAAAATATTATATATATATATATATATATTATTCATTCACGTGTTTTATTTCATATATAATTTTAGAAAAATCAAATAATTTCAGTTATGTAATAAGTTGTAATAAAATAAATATCATATTAATTCAATTTTTTCTTAAAATTTATAGTTAATATTATAAAGGCTTAATACCTCTTTTTGTCCCTCTTTATTAGGGAAATGTTCAAGTTCGTTCTACCTTTTTTAAAAAGTTCAATGTGGTCCCAAGTTGTGAAAAAAGTGTCCAATTAAATCCTTTTCGTCACGGCGTTAAATATTTAACGATTCAGCTGATAGCGTAGAGTGATCTGTGCAACGTGGCTGTTTACCTTCATAACGTGGCAGTGGCAGTGATTAAAAAATTCTGAGTTAGGGTTTGGGTATTCGAAATCGTGATTTGGGGTAGGAGGACGAGCTTGAGCAGCGTCGTTTTTGCGAGTTGTTCTTGGTTTTCCTGTAGGTGATTCGAACTCGCGGTGTAAATTGGAGAAGCTTGATGAACGAATTGGGGTTTTGCAGGTATTGCGATTCTGATTTGTGGCTTTCGAATGGAGAACCGAATTGGGTTCTGAACTCGCGTCTGGGTGGTTTCAATTTGCATTTCGCGTGGTTCTTGCGGTTTGGGATTGACACTCTGCGATTTTAGGGTTCGTGTGCTAGATTGGACGAAGGTAATGAGGTGGATGATGGTGGTTCTGAGGAGAAGCGGTAG