Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04388 LG1 60672798 60674850 PREDICTED: transcription factor bHLH91-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   callose deposition in cell wall, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, callose deposition in cell wall, regulation of transcription, DNA-templated, pollen development, regulation of transcription, DNA-templated, anther wall tapetum development, anther wall tapetum development, anther wall tapetum development, anther wall tapetum development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   protein dimerization activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/A 60672948 downstream_gene_variant
A/G 60672977 downstream_gene_variant
C/G 60673029 missense_variant p.Ser480Thr
A/T 60673031 missense_variant p.Asn479Lys
G/A 60673157 synonymous_variant p.Ile437Ile
A/T 60673164 missense_variant p.Val435Asp
T/A 60673267 missense_variant p.Asn401Tyr
G/C 60673281 missense_variant p.Ala396Gly
T/G 60673426 splice_region_variant&intron_variant
C/A 60673436 downstream_gene_variant
G/A 60673449 downstream_gene_variant
T/C 60673482 downstream_gene_variant
A/C 60673544 downstream_gene_variant
A/G,* 60673606 downstream_gene_variant
A/C 60674063 missense_variant p.Ile263Arg
A/C,* 60674128 missense_variant p.Ser241Arg
G/A 60674229 missense_variant p.Pro208Ser
G/T 60674233 synonymous_variant p.Thr206Thr
T/C 60674380 synonymous_variant p.Gln157Gln
T/C 60674413 synonymous_variant p.Pro146Pro
T/C 60674449 synonymous_variant p.Gln134Gln
G/T 60674755 missense_variant p.Phe32Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04388.1
MSTGDRPKMHEQTGCFDPNTMEESIPSLKDNFPQTLADPLTPSSHMVVDNTTNTDNGLEENLRLSVEELSFNHHNLQHQDISTYASGVTPTSASDIPHSQQHLGLNMGNSYINNTSNMDNHLVQQVIDVLPYQQSTWDPTTVQELPDIAYANQIEQQQNEQQFQQMETQNCSQSFNPSSILDPPYPSPDLLNLLHLPRCSAPSLHTNPTIYLTNPTQNTPNFQNPLAFLGDLPIGSDNNTSASSVLYDPLFHLNLPPQPPALIELFQSLPRGYSMPTNSRNGSLFGGDEIEGDGSQLDMGVLEFNRVTPTVAKGRGGKATKHFATEKQRREQLNGKYKILRNLIPNPTKIDRASVVGDAIDYIRELIRTVNELKLLVEKKRYGRERCKRPKTEEDAAESCNIKPFGDPDGGIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDCQYTASVPHTNSY*


CDS Sequence:
>Vu_04388.1
ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGAAGAAAGTATACCCTCTCTAAAGGATAATTTCCCTCAAACTCTTGCAGACCCTCTAACTCCATCATCACATATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAGGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCACAATCTGCAACACCAAGATATCTCCACCTATGCAAGTGGAGTCACTCCCACATCTGCTAGTGACATCCCTCATTCTCAACAACATCTAGGTTTGAACATGGGAAACTCCTACATCAACAACACCAGCAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAATCCACTTGGGACCCTACTACTGTTCAGGAATTGCCAGACATAGCCTATGCTAATCAAATAGAACAGCAACAAAATGAACAGCAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTTCAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCCCATCTTTGCACACCAATCCCACCATTTACCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGGCCTTTCTTGGAGACCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCACCTTAACCTTCCTCCACAGCCTCCAGCCCTTATAGAGCTGTTTCAGTCTCTACCCCGTGGCTACAGCATGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGACGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGGGAGCAACTCAATGGAAAATACAAAATCTTAAGAAATCTTATACCAAACCCCACCAAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTTATTAGAACAGTGAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGCTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGATAATTGAAGGTTCCTCAGTCTATGCAAGTGCCATAGCCAACAGGGTCATCGATGTTTTGGACTGTCAGTACACGGCATCAGTTCCACATACAAACAGCTACTAG


Promoter Sequence:
>Vu_04388::LG1:60674850-60676850(-)
ATCACTTGTTGTCACACATTATCATGAATGGCTACTGAAGCCATGGATTAGCATGTGGAATATGTTTTTGACAAAATATACTTAGGGTTTCTGAAATTACTTCCGAATATATAGTGAACATATATAATATATAACGCATTTTACATCATTTTCATTCTTCTATTTTTAATATCCATTTTCTTTCCATGCCCCAAATATATCAACAATAAATATATATATATATATATATATATATATATATATATATATATATATATATATTATTAATTTTAAACATCTATTACACGTTAGTTGGGATAGGAGACAGGATTAACGTATGAATTTAGGACATTGTTTAAGGAAAGAGATGAAGATGTCCATCTCAAAGAACAAAAATTAAGGAGACAGTATGCAGAATACATTTTGCTGTGTAATATTTTTAGGTAAGATGTTAAATTAGTTTATAGACATTATCAGTTTGGTCTTATTCATCCTTATGATTGAATAAAAAGTATATATATATATAAGTTAATGAGTAAATTATAAATAAATGGTATAATAAAGTAACGCTTGAACAGTAGAGAAGACTATAATACAGTTTTACATACAGGAAGTAAAATGAAAAGTTACATATGAAAACATTACGTTATTTGTTTAAATTAATTAATATTCAATTCAATGCCATGCATAATTATCTCTTATGAGATTTTATCTACATTTATTGTTTAAAAATAATTTGAAGATTATAAACGTATTCTTTTAAGCATATAAAAAATGTTTATATTACTTATGTACCCAACAAATTGCGTACTTCAGTGAAGAAGTTATTATTTATGATAAAGGGTTTCTTTAATTTTGTTTCATAATAGTAATGTTTTCACCCGTATCTATAGACTTGTTAATCGAATCATGTAAAACTTGTGTAATGTGTTTATAATACGCGCATTTGCTTTAATTACTCACATTTATCAAAGCACTTGGGAAATGTGATGAAGATTGAAGATGTTTTGAAGAATTTTATATAGCTTATTAATTATCTATTAAACAAATACTTTGTTTTATTAATGAAATATAGAAATTATTTAGACTTTTAGAAATTACTAGAACTAATTATTTTTGTCACATTCTTTTTGTTATACAAAAATGTTATTTTTTTTCAGTTCTAGTTTTTCATGCATGTAATCAAGATTTGTAATCAATTGTTTCTTCTATAGTTAAAAACAAGATTAAACATGTACATAAAGTGATTTATATATGATATTTAACATTTTACAAATAATTAAATTTTCAATCTTTTAAATATTAAATCAAAAAGAGTTCAAAGGAACAAATTATTGATTTTTTTTAATGTAGCTATTAATGGTGCATTAGTTTAATCAAATGTGTCTTCTAAATTACAGTGGTCCTATAAAGTTATGTGTGAATCAGAGAATGTGGGACCTGAAAGCAAGAATCTGACTGAACTGTTTGTAACTGAATGATTCTTTTTCTTGTGTTCCAATTCCTATGCCTAAAAGATTAACTAAACAGTGAGATATTTGCCTTTTTTAAGAGTCACCCTAGTTCCTACTTCTCCTCTACTTTCTCTCATCCTTTCTCACAACAAACTCTCTAAAGAAAAGAAAGAAAAGAATTCCAAATCCCTCTGGTTTTCTGTATGAAACTACTGTTTCCTACTCTGCATATTATTTAGTTTCCTTTCCTCCTACTAGTATAGGTAATTTTCATGTTTGCTAATACAATAGCAAGTAATTACTTTCTTCATTCAATAACATAGACTTTTCAATTTGTGTTAGAGCCACCTACAGCAAAACAAGATTCAAATGATCAAATCTCAAACAATTTTTTCAATGAAAGCTCAAATTCTGGTGTCCAAGTGCTGTTGTGTCTTTTTCCTTTGTTTTTTTTTTCATTTTCTCTTTCTTGGGTGATATTTTTGTATTCACTCACATGGTGTGTTCTTTTTGTTTATTTTAAATATCTGATTCTGTTGATTTGTGTCAACTACTGCAGAGAGAGTA


Gene Sequence:
>Vu_04388(-)
ATGAGTACAGGAGACAGGCCAAAAATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGAAGAAAGTATACCCTCTCTAAAGGATAATTTCCCTCAAACTCTTGCAGACCCTCTAACTCCATCATCACATATGGTTGTAGATAACACCACAAACACTGATAATGGCCTTGAGGAGAATCTCAGGCTTTCTGTGGAGGAGCTCTCCTTTAACCATCACAATCTGCAACACCAAGATATCTCCACCTATGCAAGTGGAGTCACTCCCACATCTGCTAGTGACATCCCTCATTCTCAACAACATCTAGGTTTGAACATGGGAAACTCCTACATCAACAACACCAGCAACATGGATAACCATTTGGTGCAACAGGTCATTGATGTTCTTCCCTATCAGCAATCCACTTGGGACCCTACTACTGTTCAGGAATTGCCAGACATAGCCTATGCTAATCAAATAGAACAGCAACAAAATGAACAGCAATTTCAGCAAATGGAGACTCAAAACTGCAGCCAAAGCTTCAACCCCTCTTCCATACTAGACCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTACCAAGATGCTCAGCCCCATCTTTGCACACCAATCCCACCATTTACCTCACAAACCCAACTCAGAACACACCAAACTTTCAGAATCCACTGGCCTTTCTTGGAGACCTTCCAATAGGGTCAGACAACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCACCTTAACCTTCCTCCACAGCCTCCAGCCCTTATAGAGCTGTTTCAGTCTCTACCCCGTGGCTACAGCATGCCAACCAACTCAAGGAATGGTTCACTCTTTGGAGGGGATGAGATTGAGGGAGACGGGAGCCAGCTTGACATGGGAGTGCTGGAATTCAACAGGGTCACTCCCACTGTTGCCAAAGGAAGAGGAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGGGAGCAACTCAATGGAAAATACAAAATCTTAAGAAATCTTATACCAAACCCCACCAAGGTACACGTCGTCTATGAATTTTCTGACTAATACAGAACATACTACAATTCTTTGAATTGAATATACTTTTAATTCCTACAAATGTAACCATGTCTCCAATTTTAACCCCTGAAAAATAAGTATATTCTGATCTCTTGTTTATGAAAATATGTTAGATACAGCCTTTTGTCCTTCACAAAAGATGTATCCTTTTGGTTTCATGTTTGTGAAGTAAAGATCATATAAGACTCATTTCTATATGTGAAAGATAAAAGGAAATTATTTTTTTATGAAGAATTAAAACTGGACATTCTCTTAACTACATGGACTTAAAACATATTTAAACTTTCATTTTACTATGGATCAACTGGTCAACCTTATTGGTTGGGTTTGGTTAAACACAGATTGATAGAGCCTCCGTGGTGGGGGATGCCATTGACTACATAAGAGAGCTTATTAGAACAGTGAATGAACTCAAACTATTGGTAGAGAAGAAAAGGTATGGGAGAGAGAGGTGCAAAAGGCCTAAAACAGAAGAAGATGCTGCTGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGGGCATAAGGACCTCATGGCTCCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATAGACGATGATGTCACAATCAAACTCTTCCAGAGGAAGAAAATCAACTGCCTGTTGTTTGTTTCCAAGGTTCTGGATGAACTTCAGTTGGAGCTTCATCATGTTGCAGGTGGACATGTTGGTGAATATTGCAGTTTCTTATTCAATAGCAAGGTTGGTATATATAATTTGTCATAAAATTAGCTAGGTAGTTATAATTATGAATTCTTTTCAAGAACAGAATTGTCACGTTCATCTGATTGTGAGTTTATTTTTGACTTGTTTCACTGAGACAGATAATTGAAGGTTCCTCAGTCTATGCAAGTGCCATAGCCAACAGGGTCATCGATGTTTTGGACTGTCAGTACACGGCATCAGTTCCACATACAAACAGCTACTAG