Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04340 LG1 59840872 59845841 unknown
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, root hair cell differentiation, regulation of transcription by RNA polymerase II, root hair elongation, root hair elongation, regulation of transcription, DNA-templated, pollen sperm cell differentiation, pollen sperm cell differentiation, pollen sperm cell differentiation, regulation of transcription by RNA polymerase II, root hair cell differentiation, root hair cell development, root hair cell differentiation, root hair cell differentiation, pollen sperm cell differentiation, regulation of transcription, DNA-templated, root hair cell development, root hair cell development, regulation of transcription by RNA polymerase II, root hair elongation, microgametogenesis, root hair elongation, root hair elongation, root hair elongation, regulation of transcription, DNA-templated, root hair cell development, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein binding, DNA-binding transcription factor activity, protein dimerization activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding
Pathway   B 09181 Protein families: metabolism   C 01002 Peptidases and inhibitors [BR:ko01002]
SNP Position Effect Amino acid change
T/C 59840906 missense_variant p.Phe12Ser
A/*,T 59840950 missense_variant p.Thr27Ser
C/T 59840997 synonymous_variant p.Pro42Pro
T/C 59840999 missense_variant p.Ile43Thr
C/T 59841011 missense_variant p.Thr47Ile
G/A 59841013 missense_variant p.Val48Ile
C/T 59841023 missense_variant p.Ser51Phe
C/T 59841027 synonymous_variant p.His52His
T/C 59841057 synonymous_variant p.Tyr62Tyr
C/T 59841066 synonymous_variant p.Phe65Phe
T/C 59841105 synonymous_variant p.Ile78Ile
G/A 59841132 synonymous_variant p.Leu87Leu
G/A 59841179 missense_variant p.Arg103Gln
G/A 59841188 missense_variant p.Arg106His
G/A 59841235 missense_variant p.Val122Ile
G/A 59841238 missense_variant p.Gly123Arg
A/T 59841349 intron_variant
A/G 59841375 intron_variant
T/G 59841395 intron_variant
C/T 59841425 intron_variant
G/A 59841450 intron_variant
T/C 59841552 intron_variant
G/C 59841556 intron_variant
A/G 59841592 intron_variant
T/C 59841622 intron_variant
G/A 59841624 intron_variant
C/T 59841640 intron_variant
C/T 59841652 intron_variant
C/T 59841657 intron_variant
A/G 59841658 intron_variant
T/C 59841777 intron_variant
C/T 59841780 intron_variant
T/A 59841784 intron_variant
G/A 59841808 intron_variant
C/T 59841809 intron_variant
C/T 59841827 intron_variant
G/T 59841892 intron_variant
A/G 59841896 intron_variant
C/G 59841914 intron_variant
G/A 59841928 intron_variant
C/T 59841931 intron_variant
A/T 59841943 intron_variant
G/A 59841948 intron_variant
A/G 59841962 intron_variant
A/G 59841970 intron_variant
T/G,* 59841993 intron_variant
T/C 59842014 intron_variant
T/C 59842025 intron_variant
G/A 59842078 intron_variant
C/A 59842114 intron_variant
A/G 59842185 intron_variant
A/G 59842199 intron_variant
T/A 59842219 intron_variant
G/A 59842290 intron_variant
G/A 59842291 intron_variant
A/T 59842404 intron_variant
G/A 59842461 intron_variant
G/A 59842589 intron_variant
A/G 59842605 intron_variant
G/A 59842614 intron_variant
G/A 59842673 intron_variant
G/A 59842683 intron_variant
G/C 59842777 intron_variant
G/A 59842957 splice_acceptor_variant&intron_variant
C/A 59843020 missense_variant p.Asn159Lys
G/A 59843023 splice_region_variant&synonymous_variant p.Lys160Lys
A/T 59843030 splice_region_variant&intron_variant
T/C 59843686 upstream_gene_variant
T/C 59843695 upstream_gene_variant
T/C 59843705 upstream_gene_variant
T/C 59843761 upstream_gene_variant
C/T 59843763 upstream_gene_variant
C/T 59843813 upstream_gene_variant
C/T 59843827 upstream_gene_variant
G/A 59843836 upstream_gene_variant
C/G 59843848 upstream_gene_variant
G/A 59843852 upstream_gene_variant
A/G 59843857 upstream_gene_variant
C/T 59843882 upstream_gene_variant
C/A,T 59843898 upstream_gene_variant
T/C 59843914 upstream_gene_variant
A/C 59843920 upstream_gene_variant
T/C 59843922 upstream_gene_variant
C/T 59843927 upstream_gene_variant
C/T 59843934 upstream_gene_variant
A/G 59843946 upstream_gene_variant
C/T 59843953 upstream_gene_variant
C/G 59843955 upstream_gene_variant
G/A 59843967 upstream_gene_variant
G/T 59843968 upstream_gene_variant
G/A 59843970 upstream_gene_variant
G/A 59843971 upstream_gene_variant
C/T 59843974 upstream_gene_variant
G/A 59843981 upstream_gene_variant
G/A 59843995 upstream_gene_variant
A/G 59843996 upstream_gene_variant
C/G 59844004 upstream_gene_variant
C/T 59844021 upstream_gene_variant
G/A 59844043 upstream_gene_variant
G/A 59844074 upstream_gene_variant
G/A 59844183 upstream_gene_variant
G/A 59844481 upstream_gene_variant
C/G 59844508 upstream_gene_variant
A/T 59844638 upstream_gene_variant
T/C 59844693 upstream_gene_variant
T/A 59844797 upstream_gene_variant
T/A 59844917 upstream_gene_variant
A/T 59845145 upstream_gene_variant
C/A 59845498 upstream_gene_variant
G/A 59845543 upstream_gene_variant
G/T 59845681 missense_variant p.Arg197Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04340.1
MTSSMAAKSAFFPLSPPLYKLVKKEATRLLLMEIIIVYVRHPITKSTVFYSHDNATNIGQMYELFVKLSTHIHINMEIVVIFIFQLLTYLQPVNRECFSNSCRALRRWLGNVFQLLTYLQPVGREHFQIPSKPFTSGQLRRERIAERMKALQELVPNANKTDKASMLDEIIDYVKFLQLQVKETREGNVMRRRNRKRLCCEGRRRMQEERQRLVVVPRGMVGVEEWFGVSTKSKRESTTTLSLSCHVRE*


CDS Sequence:
>Vu_04340.1
ATGACTTCTTCAATGGCGGCGAAGTCGGCATTTTTCCCTCTAAGTCCACCGTTGTACAAGCTAGTGAAGAAGGAGGCCACGAGGCTACTGCTCATGGAGATCATCATCGTCTACGTTCGCCACCCCATCACTAAGTCCACTGTCTTTTACTCCCACGACAATGCAACCAATATTGGTCAGATGTATGAGCTCTTCGTCAAGTTGAGCACCCACATCCACATCAACATGGAGATTGTCGTCATCTTCATTTTTCAACTCCTGACTTACCTTCAACCAGTCAACAGAGAATGTTTTTCAAACTCTTGCCGAGCCCTTCGTAGGTGGTTAGGGAACGTTTTTCAACTCTTGACTTACCTTCAACCAGTCGGAAGAGAACATTTTCAAATTCCTTCTAAGCCCTTCACAAGTGGTCAGTTACGGAGGGAGAGAATCGCAGAACGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGAAACAAGAGAAGGGAATGTGATGAGGAGAAGAAACAGAAAGAGATTGTGTTGTGAGGGAAGAAGGAGAATGCAAGAAGAAAGGCAAAGGCTCGTGGTTGTGCCACGTGGCATGGTTGGAGTGGAAGAGTGGTTTGGGGTTTCAACAAAGAGCAAGAGAGAGAGCACAACAACTCTCTCTCTCTCCTGCCATGTCAGAGAGTAA


Promoter Sequence:
>Vu_04340::LG1:59838872-59840872(+)
TTCTTTTCTTTTTTTTCTTATATATTTGTAACTTATACAACTAACAATCAAAGACTTCTTATTATCCTATTATTATTTTTGCTGTTAAGTATTAATTTAATCAATTTATATATATATATATATATATATATATATATATATTATTAACCTATAATTAAATATGTATTGTAGGACTATCTAGTCGGGCAAGAAACCAGCAAAGAGATAACCGACCGGTTCGGAAACAATCATTAATTAATAATTAATCTGAGTAATAACAATTATTAATGGACAATTAATAAAAATAATAATCATTAATTAAAAATTAATAGAAATAGTGAAAGTTATTTATTGGTAATTAATGGGTCAGATCTAATTGTAATCCCCTTATAATACTAGAGCTCTCAAAACATGTAACTTGGCTCGATCTGGCCCGGCTCACCATAGGTTAGTCACTTAGTGACTCAACCCAACCTGACTCACTTATTAGCAAGCCAAAAAAATTCGAACCTGATCCGACCTATCACGGGTTGGTGGTTAAACGTGTTGGCTCACTAGCTTACTTAATTATAAGTTTTTTTTAAATAAAATAAAATTATAATTTTTTTAAATTCAAATCTAAATAAATTTAACTCTAAAATGATGTTAAACTCCAAATATAATTCAAAATTAAAAAAATATCATACCATCCAAGCGTAATCCAAAAACAAACCCAAAAGGAGAATAAATAAGTTTTTAATATTGATAATTTTTGTATCACTTGTTCATTTATAATATTAGAGTCTTGAATAAATAAATTTATAATATTTTTCTCTTTTGAAACATTTTTCTTATCCACATCTACAATATAATAAAAAAAATGCTAGCCAATAATGTTGAAACACAAAATAATAAATAATTAAACTAAATTAGGTGGGTTGATGAGCCAACCCAGCTCCCCACGGGTTCAACCCGGATGAGTCAGGTTCTAAGTGAGCCGAGTTGAAAACTAACCCGCATAAAAAAATTAAATTTTTTTTCAAACCCAACCCGACTCAAATTCGTGGTGAGCCGGGTTGGCTCGCGGGTTACAACCCATTTTGACAGCACTACATAATACAGGGGAGGTTAGGTAATTAATTGTGATTAAGTTTAATACCTATTTTCGTGTTTCTGTTTTGTTTTCTTTGCAGGTTGGTGACACAATGGTTGGGGTTCTTTGTGATCTTATGATTTGGGGATTTTAGGATTTTTGTTTGGGGTTGAGGGTTTTGATGTGGGAATTTCTTATCTCTTGTTTCTCCTCTGCAGATTGTTAATGCGATTTGGAAGTTAGGATTTTCGAATTAGGGTTTTGTTTTCTGATTTCACGTTTTGGGATTATCTGCAATTCTATTCTAATCTTGTGCTTTTAGGATTTTTGGAATATGTCATCTTGCCTAATTGTAATTTTCCTTAATCTTAACTTTAACTTTGCCACGTCATTAACTTTTATTTTTAAAATTTACACCTCAATTGACCTCAGTGTACCACACAATCAATAATTGGACAGATCATTCAATTTTAGCTAGGGGACAATTACACCAGTAACGTTTCTAACACCATAAGTAAAAACAACCATCTTGAACCATTTTTACAAAATATGGGACAACTATGAACATCTAAAAAAAGGTTTGACCACTTTAGACAAACCTACCAAACCTAGGGACCAAACTAGGTATTAAATCTTATAATTACTTTTTTCTTGGATAAGAAGGAGATAGATCAGACGACGTAACTTGGATGATGGAAGATATCAGGAAGGTCATCCTATTTTTAGGACAACTTTGAGTGCTTTGAGTAAGGGACCTTAACACCTTACCTGAAACATTTTGGCACTCACCGTAGGGCTGAGCGGCAACCCCCTATAGCCACAAGGAACCAGACAAGCGGTACAATGGAAAATAGTTACCCGGCCCTAGCACTATTATTGTGTAATGTGAGAATCGAAGCCACTAAAGTGAGTGAGTTAGTTTTTGGAAGGAAGAAGAAGATTGGTGGCA


Gene Sequence:
>Vu_04340(+)
ATGACTTCTTCAATGGCGGCGAAGTCGGCATTTTTCCCTCTAAGTCCACCGTTGTACAAGCTAGTGAAGAAGGAGGCCACGAGGCTACTGCTCATGGAGATCATCATCGTCTACGTTCGCCACCCCATCACTAAGTCCACTGTCTTTTACTCCCACGACAATGCAACCAATATTGGTCAGATGTATGAGCTCTTCGTCAAGTTGAGCACCCACATCCACATCAACATGGAGATTGTCGTCATCTTCATTTTTCAACTCCTGACTTACCTTCAACCAGTCAACAGAGAATGTTTTTCAAACTCTTGCCGAGCCCTTCGTAGGTGGTTAGGGAACGTTTTTCAACTCTTGACTTACCTTCAACCAGTCGGAAGAGAACATTTTCAAATTCCTTCTAAGCCCTTCACAAGTGGTCAGGTAACGTTTTTCAACTCCTGACTTACCTTCAACCAACTAGCAGAGAACATTTTTCAAACTCTTATCAGTCCCTTCATAGGTGGTCAGGGAACGATTTTCAACTCCTGACTTTTTCAACTCCTATTAAGCCATCCACGAGCAGTCAAAGAATGCTTTTTAACTACGGTCTTATGTACAACGAGTAGTCGATGAAGCTCAAAATCTTGGTCAACATACAATAGCACACAAAGACAAGGGTCGAAGGTAAAACTAATTCGCATCAGAAGTAGAGTACCTAAAACTCCTTCGCACATTATATCATGCTTGAGCTTGGGGGCCTATGTACTATATGACCACTCGGTCAAGCAAGAACCACGTGGTCGACCACCCAGCAAGGAGATGACTGACCGGTCTGGAACAATCATTAATTGATAATTAATTTAAGCAATAACAGGTTAATAACAATAATAGTCATTAATTGAAAATTAATAGAAATAATGAAAGCAATTTATTGACAATTAATGGGTCAGATCTAATTGTAAGGCCATTATAATATGTTTAACAGGGGATATATTTTGATTACTCATCTTTATTACAACATTATTTTGCAAAATTGTTCACTTGAACGTCGAAGTCCCTTTAACAAGTACTCTCACATGGCTTGGACAAGAAAGAGAAAGAGCGAACAACATAACTTAAATGATGAATGACCATCACTAAGCTCATTTTATCTCTTGAATAAAGGACCTTAACTCCTTATTCGAAACAAAATACAAATATTAAAAGAATTACACTTTCTAAACAATTTCAAAAGTAATGGCAGAGAAAAAGAAAGTAATAGAATTTTTTCAAACTACTTTCTAAACAATTTTTTTAAGATAACAAAAATATACTTCACCAATAAATAAAATAGGATAACTATATAAGAAATGCGATTTTAATACTTTAAGAGGATGGTGAAACTTTTTGTTTTTGAAGGATTTAACATATTGTAAATTTTACATGCAATTTGTTTCCTTGTTTGTGGTTTACTTTGGCATGGTAAAATTTCAGTAAAAACCATAATTTATAAGGTTTAATACCTCTTTTGGTCCCTCGAAAGGGGGCCAATGTTCAATGTGGTCCTACTCTTTTTTAGAAGTTCAATGTGATCCCACCTTTTGTAAAAAGTGTGCAATCAAGTCCTTTTTGGAAACGGCGTTGAGTTTTTAACGGAGCAGCTAACAGGGTGGACTGAAGTTAGCTACGTGGCTTTGTGTGGGTAATACGTGGTTGTGAGTGGGTGATACGTGACTGTGAGAGGGTAAATCAGAAGTTAGGGTTTGAGTTGCAGAGAAATTAGTAATTTGGGATTTATCGTCGTGTTTCTTCTGAAGGGTGTTCGTCGTGTTTGAAAAGTTGGGGTAAAGGATCTTCTCGGTGGTCCCATGGTTGTGGTGTGAGAGGAGACTCAGACAAAAATTAGTTCACTAGAAAATGAACTTATGACAATAGAATCCGAATCGCAATCTGGTCACAGTCCAGAAGCATTGTCAATTGCACCCTCTGATGATGGAAATATAGAGAAAATGCCTCCTAACTTGCATAGAGAAGATACTTTGAACACGACGTTTGATTGTATTGGTGAGGAGATATGGTCATTCTTACTTTTATTGTTCTGAAGCTGGGTTGAAAATTTTGTTGTGTGTGACAGTTACGGAGGGAGAGAATCGCAGAACGAATGAAGGCCCTGCAGGAACTGGTTCCCAACGCCAACAAGGTAAATATCAGTTGATGGATTGAAGTAAGGTTAAACTTAATTATGTTGTCTTTTTTGTGGATTAATTGGAGTATAATGAACAATAATTAAATTAGGCACTTTTGAAGTGCCGAGTAGTTTTGGTATGTATTGTAGCGGCAACACCTTGCCATTATATATATCTTTCCGTGCGTGCCTGAAATATGAAGCTGGATAGCACTAAGGTTTGGTACTTGCAGCAAGTGGGATTTGTGGTTTTGTTGTTATCTGTATGAAGAATGAAGGGACTAGACGCAACACATGAACAATATATAATAATAATAGTACTATATATGCACCATTGCACCATCCAATGCAAGGATCAATCCTTGGTAAAAGGACTCCTGCACTGTCTTTTTACAGTACACTCTCTTTTCTCTGATTCTTTTTATCATACAGACTTTCTAAATTATTTTTCTCATTTCATATCTGTCTCACTTTACTTTAAAAAAGTGTAAAATGTAAATTATACAAGCAAATATATCCTTGTTAATAAAATAAAAGTGTATGTTCATGAATTGACAGACTGATAAGGCCTCCATGTTGGATGAGATCATCGATTATGTGAAGTTCCTCCAGCTCCAAGTCAAGGTGAGATTCCCTCTGTTTCCACGTTTTCTTTGCAATTGACTTTCTGCTATCAATACCACAACTATGGGACCATCGAGAAGATCCTTTGCCCCAACTTTTTGAACACGACGAACACCCTTCAGAAGAAATACGACGATAAATCCCAAATTACTAATTTCTCTGCAACTCAAACCCTAACTTCTGATTTACCCTCTCACAGCCACGTATCACCCTCACACAGCCACATATTACCCTCAGACAGCCACGTAGCTAACTTCAGTCCACCCTGTCAGCTGCTCCGTTAAAAAATTAACGCCGTTTCCAAAAAGGACTTAATTGCACACTTTTTACAAAAGGTGGGACCACATTGAACTTCTAAAAAAGAGTAGGACCGAATTGAACATTTGCCCCCTTTCGAGGGACCAAAAGAGGTATTAAACCAATTTATAACCTCTAATAATGGAATTAAATCTTATAACCATTTATTGGTGCACACTTTTTGTATATCTTCTTTCCTTTGTATTTTTATATTCATTCACTAACTTTCTAATTTCTATTATCTAAGAAAACTGTCCACAAAATTGAAAATATTTTTATTGTATAATTATAATAATATTTTTAAGTAGAAATTAAAATATTTTACAATTATCTTTTATAAATATTTTGTTATATTTTGTTATATTTTGTTTTTGTCTTTATGAAAATTTACAAATTTTCCTATTTTATAATTATAATATTATAAATTTTTAAATTTTTTATGTATAATTTTTTTTTATAAATTTGACCATATTTTTATATTTTATAATCATAACACACATACCTACGTGGATTCCACTAATCAACTACCGATTTTATTAGTTGCATTCTCTGTAGCGTTCCACAATGCTTTTTGTTTCCTTTGGCCTTACCATAAATAACCTACTAAATAGAAATAGGAAAAAAGAAATACACAATTTAATGTTATTATTATTATTTTTTAACTTTTTCCCTAATTCTCATTTGTATTGACAGAAGTATTAAATGAAAAGTTTAATTATGCATTGATTTCTTTTTTTATTATCGATTTAATAATATTCTAAATTAGTTAGAAGGGCGATAAAGATAATACCACGTGCGAATTTAATTTTTTACCACTTTTAAATTTTTATATTCATGATTATTGATTCTTTAAGGAATATTAAATTTTGGCAATTATTATATTTATCTTTTCAGAAAGAAAATATATCTTTCAGGATATATTTCTAATATACTCTGTAAATTTTGTGGTATTTAACATATTTCCAATAGATTAAATTCCACATTTAGTGAAAAAAAAAATGACTTAAATGATTGCATTATTATGAAAAATATAATGATTGCATTATTTTTCCAATACTTCACTGCTGGAGACACGAGTAGTTCCACTAATACCATATTGAGTAACCATAGATTGTGACTAAATTAAACGTTAAATACGTCTTAATTAGATTATTATATTTTTTATGACAGTGATATACATTCAGCAGTAAAAGCAGTTACAGAGAAAAAACAACGAGGTTGAAAACACAATCTCGAAATAGTTGTTGGATTCAGAAACTCAATTAAGTGTAGAAGTGCTGGTTAGCTTAGGTATTAATTGACAGTTTGAAATAGATTTTCCTCATAAATTAATAAAACAGCGACATTATAAATGACACCCACAAGCAATTCATGAAGAAACCAAACAAAAAAAACAGTTACTTTTGATAAACTAACCTAGTAGTTTCTAATTTAAGATTGAGAGAGACTTGCTGTTAATAAATAATCTTATGATATATCTTAAATTAGAGATAATTCTGTTTATCTCGAATAAGATAAAATTGTTTTACCGATATTTTTGAAGGATCTTCAAATTCGAAAATTTTAACCAACTTTCAAGTGGTCTTTTTGCTGGGTCCCTGAGTTCATATTTTGTGAAGGAAAAAAAGGAGTGAGGGAGGGAAAAGTTGAGGAAAATTTGTGGGAAATTGATTATGCGAAAAGTGATAATGCAGAGAATGAGATTTAGGAAACAAGAGAAGGGAATGTGATGAGGAGAAGAAACAGAAAGAGATTGTGTTGTGAGGGAAGAAGGAGAATGCAAGAAGAAAGGCAAAGGCTCGTGGTTGTGCCACGTGGCATGGTTGGAGTGGAAGAGTGGTTTGGGGTTTCAACAAAGAGCAAGAGAGAGAGCACAACAACTCTCTCTCTCTCCTGCCATGTCAGAGAGTAA