Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04335 LG1 59718209 59721139 PREDICTED: nuclear transcription factor Y subunit A-3-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription, DNA-templated
Cellular Component   is active in   CCAAT-binding factor complex, CCAAT-binding factor complex
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific, DNA-binding transcription factor activity, DNA-binding transcription factor activity
Pathway   B 09151 Immune system   C 04612 Antigen processing and presentation [PATH:ko04612]
SNP Position Effect Amino acid change
A/T 59718362 synonymous_variant p.Gly200Gly
C/G 59718430 missense_variant p.Glu178Gln
C/A 59718458 missense_variant p.Arg168Ser
C/A 59718890 missense_variant p.Asp80Tyr
G/A 59718902 missense_variant p.Pro76Ser
T/C 59718906 synonymous_variant p.Arg74Arg
C/A 59718911 missense_variant p.Ala73Ser
C/G 59718972 intron_variant
C/A 59719179 intron_variant
A/T 59719368 intron_variant
G/A 59719372 intron_variant
A/T 59719401 intron_variant
C/G 59719461 intron_variant
A/G 59719686 intron_variant
G/A 59719990 missense_variant&splice_region_variant p.Ser38Leu
A/T 59720014 intron_variant
T/C 59720331 intron_variant
C/A 59720346 intron_variant
C/G 59720360 intron_variant
G/A 59720434 intron_variant
G/C,T 59720476 intron_variant
A/C 59720677 intron_variant
T/A 59720852 intron_variant
G/A 59720997 intron_variant
C/T 59721051 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04335.1
MLKTLSWEKEYRRCNQVICSWSGFYLTSFTNVSQPATSHTAFHLAEPCFSGLLASPYGPQPNIHPAQLIGMPTARIPLPLDLSEEPIFVNAKQYHAILRRRQYRAKLESQNKLIKERKPYLHESRHLHALKRARGSGGRFLNTKKHEESKPTSQNHDIDVSRCTHLNLRGNMSESKARELNYRDGASTATCSDISSASNSGDLFQQHQPDIRLCGYPSHIGRNMQGYSADISGSGGGGGAKYCVRHCNSPP*


CDS Sequence:
>Vu_04335.1
ATGCTAAAAACACTAAGTTGGGAGAAAGAGTATAGAAGGTGTAATCAGGTCATCTGTTCGTGGTCAGGATTTTACCTTACCTCCTTCACAAATGTGTCACAACCAGCCACTTCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGCCCACAACCTAATATTCATCCTGCTCAGCTGATAGGAATGCCTACGGCTAGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTAAGGCGCAGACAATACCGGGCAAAACTTGAATCACAGAACAAACTCATCAAAGAACGGAAACCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCCAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCATGAAGAGTCTAAACCCACTTCACAAAACCATGACATAGATGTTTCGAGGTGTACTCATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTGAGTTGAACTACAGAGATGGTGCTTCCACAGCCACCTGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGGTTACCCTTCTCATATAGGAAGGAACATGCAGGGTTACTCTGCTGATATCAGTGGTAGTGGTGGTGGTGGTGGTGCAAAGTATTGTGTTAGACATTGTAACTCACCACCATAA


Promoter Sequence:
>Vu_04335::LG1:59721139-59723139(-)
CAGGAAACAAAGTTTGCATCATGTGACGCTCTTGAACAGACACTTCCTACAGAGTTAATTTCTGCTACTAGACTATTGTTCATGTTCCCTTTGTGACATTCATCTCAAAAACTCCTTCTAAATTGTTGCAATCTTGCACCATGAGTTCATTTAAGTTTTTCAAATAAGGAAGAATATTAGATGGAACTGCACACTGTTGAATTTCACACCCTTTCTTGTGTTCCACACACTAAATGATAAGCATAAGAAATCGTGATAGAAAGTGACATGAATAGCTCATAAGTTTAGGTAAACTCATAATTTACCAAGTTTCTTTTTCCAGAAAGTATGTGTTTATTTTTCTTTCACAAAAGCTAAACTGTTTAATATATATTGGTGGAGATTTTGGGTAAGTATATTTGGCTTATCTTCACATTCAGAAGAAAAAAATTAAGAAAAAAACTGAGTCTAAAATTGCCTGATAAAATTAACTTAATATCAGCTTGTTCAAGTTAAATAATAATCCTATGATGAGTGTGACATCAGAGTTTGAATAAAAATTGAGGCCTAGCAATAATTACTGTTAGTGGTTTAAAAGCAATGGGAGAAATAAAAGAGGGTCCCATAGAATTAGGAACAAGTACGTGGCATGTGAAGTGTAGGACCTATTAGAACAAGTTGGATACTACTGTCATATTCATTCAACTTCAATGAAATGCAAGTTGTGGGTGGAAGGAATCATGGATCACTCAATGACATGGTTTTTTGAGCACAAATTTTGTTACTTCTGTAAGGCTTCAAAATTAGAAATCAGTTTATGGCACATAAATATTCAAAAGGGTGCTTTTAATTTAATTTAATTGAAGTATTTTTTAATCATAAAAAAATGCAACTCAAATATGAACTTGTCCTTACCTATTTGCTGTATGAACTTGTCCTTAACATTGTCATGGCTATTCTTTTCTTGCCTCAAATTAACACCATTTAGTGCCATTATGTATCCTGATATTTCTCTTGTGGAGTAGCTTTTAAGGATGGATGTTTATATATTATATTAGAATTGCTGGATGTAATTTTTCTCAAGATTTAAAATTGATATTTCTCAAGATGTTTATATAATATTCATGACTTTGTTTTGTTCCTGTCGAGCTTTCATTGCTGAACAATCTTGTGTTTTTTATCTTTCCATTTTCTAATATTGTGTTATTCTTATTGTTTTTAGGCAATCAAATTGAATGATGTTAAATCATGCAAGGGAACAACATTCTGGATGGCCCCATAGGTTTGCCTTCAATATTCTCTTCTAATTAAAGTTATTGAAAAATGGGTATCGGCCGTCATTTTTATGAATGGAGTGATGAATTTGAAAACATAAACCATGTATAAGTGTCTCTGCCATTGGTTCTAATCAGTCATAATTAGGCATGAGACATTTTCTTTTACACCATTTGTGAATCATTCAAAACTTAAGTAGGTTTATATATGGTGAAGGAAACAAAGTCAATTTAGACTTACAACCTAGTATGGAAACTTGGATTCTTAAATTTCAATTACAAGTGCTTAGTTTGCCTTCAATAACTAAGAAATATAATCTCTGCCAAGAAAAAAAATTATGATCAAAACAACAGTTTAATAAGATAGTGGTTAGTTTAGTTAAAAGCACTTAGTAAACAAAATCTGATATGTTGATGTAATTACTAAAAACAACTACTACTAATCTGAACACAACATTATAGGTTAACCTACAAAAGCTTGAAAAAATAACAATTAGCTTAAAACATCAAAGAAAGTTCAAAATCATTTCCTGCTTCGTATTAGATCATTGCTATGTTCATAGTGTCATCAATTCCAAGAGTCAATTATGTGTTGTTCTGTTCTGTTCTTTAAATCCAACTCTGCAGAGTTAATGTTGGTTTGAAATCTGTTACTGCACTTTATTGTCAAAGGAAGCAAAGATTGTTGTGCTAACTTTGAATCTAACTTTGAACTTGATTGTTGTGCAGAACTAAAGGAAGCAAAGA


Gene Sequence:
>Vu_04335(-)
ATGCTAAAAACACTAAGGTAGTTATTTGGGAGGAGGAAAGTGCAGAAAGGCTTGGAAAGATCTCCAGCCTAGTGCCACACACACAACAGCTGCTAGTGGAAGGAGAGATGTTGCTGCAGCAGAGAGCTGGGAAGGAGGAAGGCAAGGAAGCCATGGAGACACTGCTGAAAAGAGTGGCTGAGCATAGGAGATTAAAACCAATAAGCCATTTCTTTCCTTTTCTTTTCACTTTTTGTGATAAATTTTTGTTATTAGCTTGCATAGTCATAGATAGCATAGTTAATAATAGGATAGAAAATATGTTGTTCTACATAAAACTAAAAAGAATTAATTTTGATCTTTGGCCTATTTGAACAAATTTTCTTCTTAGTTATATCTGTGGTTTGTCTGTGTTGTTATTAGGAAGCCTTACTCACTCACACATTGAGGACAGTGTGCCTCTTAAGTGTGAGGGTGGGAAGGTATAAATTTAAAAATACTTTTTTTTCTCTGAGCTGTTTTTCCTTTAGCTTAGGTCTGGTTTAGTTTTAAATACTTAGTGTAGTTTACTATTCTTGTTTTAGTGTGTAAATACCTTTCATAATCTGTTTTGGTTTTTTTAATAGGAATTAGCTAGTTTTTAGTTTTGATTGTTAATACTTCTTAGATTCTTTTACTTTCATTCATTCTGTTAGAACTTCTTTTAGGTTTCTTTCTTTTCCTGTTCCTATTAGTTTCTTGTTCTGTTGCTGTTTTCTTAGTAGTTATTTTAGATTCTTTTCATTTTCTAGGTTCTGTTTGAGCTTGTAAATTAGGATTTGCTGTTTTAAGATTTCTTTTGTTAGATTGTTTAGTGCATGTTTGGTTTAAAGCTCTAGAAGTACTTTTTGTGTTATCAGAAAACACTTTTTGCTTAATGGATGTTGGTAAATACTTGCTGTAGGTCAATTTTCAGTTCAGTGTAGCAATTCTTCTGCTTGTTCGACACTTAACACAGTTGGGAGAAAGAGTATAGAAGGTGTAATCAGGTCATCTGTTCGTGGTCAGGATTTTACCTTACCTCCTTCACAAATGTGTCACAACCAGCCACTTGTAAGTTGATGTATGATTGTATCTCAGTGGACTGATATTGTTTGCAAATCTCTTTTCTTATAATTTGCTTTTCAAGCTCATACTGCATTCCATCTTGCTGAGCCATGCTTTAGTGGCCTACTAGCTTCTCCATATGGCCCACAACCTAATGTAAGATATTGGAATTTATTCATTTTTTTTCACTATTTTCTTATTCTTGTCAGCTTGTCTTCAGCACAGTGAGTTAAAGATTTATCATTCAAACAAATTGATAAAATAAATGTATGAGTATGAGTGGCATTAGGTTATGGTGTATCTGGAAAGTACTTTGTTTAGATCTGGTGTACTGAGTTTTTCACTTTCTAATTACTCCACTCTGTGATTTCTGATTTTGTTATGATGTTGACTTACAAATAGGTTAAAGGTCTTTCGGGAAAGCATGTTGCCCTTATTATTAGCAGTTTTAATTTGATTGGAAGCTTTCTGAGAGACTTTTGGATATATGTTACTATAAGTAGATGCTATTGTGGTTGATTCCTGTATTAATTCCATCATTATGCATATTTAAATGAATCACCAATAGCGCCTTTATTTTACTTATTATTATACGTCCTTGAGAATCTTTTCAGCAATCATCTATGCTTAATTAGTTTTTACTATTTGTTGTGCCACTGTTAGCTTGCCAACCTTACAGATTCTCATAGTTCATAAAGTATGCTTATGAAGAATCTTTTTGGTTTAAAAATGTTTCTTTGCTCTCCTTTGCACCTCATTTGTTCTTATTCTTTCATCCTTTGTATTATTATTTACTAAAGCACTTTTTTATTATGGTGGAGAGCTTGTTTCTTATCTTTGACTCAAGGTGTTCTTTATTTTATAGACTTAACAATCTGACATGCATTCTTTACCAGACAGCATGGTTACTCTTGCTAACCTTTATGCTGAGTTGTTGGAAAAAGAAATTGAGCCTTCTATGGATAATCAAGCTTTTGAGTATTTGGATTCTCTTATGATGTGTTCATTCTTTATTTTAATTAAATGACCTAACAAAGTTACATAATGCCTTCAAACTTCCATCATGTTAGTAACACTAAGACATTATGTGCATTTCTATAATGTAAACCATGCTATCAAAATATGGCCAGATTCATCCTGCTCAGCTGATAGGAATGCCTACGGCTAGAATTCCTCTGCCACTTGATCTTAGTGAGGAGCCTATATTTGTGAATGCAAAGCAGTACCATGCTATTCTAAGGCGCAGACAATACCGGGCAAAACTTGAATCACAGAACAAACTCATCAAAGAACGGAAAGTAAGTGCACTTCTGCATTTTAGAAATGCTGTAAAATCACTCTTTAACACAAGTGTTTGATAAAACATAAAAGAGTGATTTTACAGCATTTCTCATACTTCTCTTTTGTTTCCTTTTCCTTCTAAGTTCAACTTCTCTCCTTAACGTTACCATGTTTGTTTTTCAGCCATATCTTCACGAGTCTCGCCATCTACATGCATTGAAGAGAGCCAGAGGTTCTGGTGGTCGCTTCTTGAATACAAAAAAGCATGAAGAGTCTAAACCCACTTCACAAAACCATGACATAGATGTTTCGAGGTGTACTCATTTGAATCTGAGGGGAAACATGTCAGAATCTAAGGCTCGTGAGTTGAACTACAGAGATGGTGCTTCCACAGCCACCTGTTCAGATATTTCTAGTGCATCTAATAGTGGTGATCTCTTCCAGCAACATCAACCTGACATTAGATTATGTGGTTACCCTTCTCATATAGGAAGGAACATGCAGGGTTACTCTGCTGATATCAGTGGTAGTGGTGGTGGTGGTGGTGCAAAGTATTGTGTTAGACATTGTAACTCACCACCATAA