Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04253 LG1 58435803 58437207 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 58436026 missense_variant p.Ala109Val
C/T 58436090 missense_variant p.Gly88Arg
G/A 58436108 missense_variant p.Arg82Cys
G/A 58436116 missense_variant p.Ala79Val
C/T 58436129 missense_variant p.Gly75Arg
T/C 58436136 synonymous_variant p.Arg72Arg
C/T 58436139 synonymous_variant p.Gln71Gln
G/A 58436142 synonymous_variant p.Arg70Arg
C/T 58436143 missense_variant p.Arg70His
G/A 58436154 synonymous_variant p.Tyr66Tyr
A/G 58436171 synonymous_variant p.Leu61Leu
G/T 58436216 missense_variant p.Pro46Thr
T/C 58436225 missense_variant p.Ile43Val
G/A 58436333 upstream_gene_variant
C/A 58436513 upstream_gene_variant
T/A 58436514 upstream_gene_variant
G/A 58436669 upstream_gene_variant
C/T 58436674 upstream_gene_variant
A/T 58436685 upstream_gene_variant
A/T 58436686 upstream_gene_variant
T/C 58436696 upstream_gene_variant
C/T 58436721 upstream_gene_variant
A/T 58436761 upstream_gene_variant
C/T 58436762 upstream_gene_variant
T/C 58436832 upstream_gene_variant
T/C 58436887 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04253.1
MIPKCFGINKHKRWNVFLIITLYKSPTSLHKKPQLNRKPSLQISLPKKAEWIQFGKPENQLEKKHYRGVRQRPWGKFVAEIRDSNKRGSRVWLGTFGTAIEAAKANNRAAFRLCGSKAALNFPLEAGAVDATVKAEGERTRRRQEEEVEEVKLVVKKEKTTEQEVNCFREMSLTPKVEDDQR*


CDS Sequence:
>Vu_04253.1
ATGATACCCAAGTGTTTTGGGATTAATAAGCATAAGAGGTGGAATGTATTCTTAATCATCACACTATACAAGAGCCCCACATCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTTTACAAATCTCTCTCCCCAAAAAGGCCGAGTGGATCCAATTTGGGAAACCGGAGAACCAGTTGGAGAAGAAGCACTACAGAGGAGTCCGCCAGCGACCTTGGGGAAAGTTCGTCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGGCACCGCCATCGAGGCCGCCAAGGCCAACAACCGTGCTGCCTTCAGGCTCTGTGGCTCAAAGGCCGCCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGATGCCACAGTCAAGGCCGAAGGCGAAAGGACGCGGCGACGCCAGGAGGAGGAGGTAGAGGAAGTGAAGCTGGTGGTGAAGAAGGAGAAAACAACAGAACAGGAGGTGAACTGTTTTCGGGAGATGTCGTTAACGCCTAAGGTTGAAGATGATCAAAGGTAA


Promoter Sequence:
>Vu_04253::LG1:58437207-58439207(-)
TAGGACATTTAAGTTATGGTGGCTTAAAAACATTGGCCACTAAACAAATGGTGAAACGGTTACCTCTTATCACAACTCCCAAGGATTTGTGTACACAATGCATGGCAGGGAAATAACACTGAAATGCAATATCAAAGAAAGCCTTTGGAGAGCATCAAAGAAGTTGTAGCTGGTTCAGGAGACATATATGGGCTTATTCAACCAACTTCAAGGAGTAATAAGAGGTATATCCTAAGTTTTATTAATAATCTATCCCATAAGACTTAGCTATACTCTTTTAAGTGAGAACTCGGAAACTTTTTCCTTATTTAAAAGTTTCAAAACTCATGTAGACAAAAGGGAGTTGGAGAAAACATTCTTTTCTTACACATAAATAGAGTAAGAGAGTTTACTTCCAAGGAGTTTAAAAAAAATTGTAGAAACCTAGGCATTCAAAGAAAATTAACAGTTGTCTACCTTTATAGCTTAAATATGTATTTATAGATTTCGAAGTGGATTTTGGATTACTAACAACCTAATTGTGGCCCAATTGATGTTAATCATGTTTTGTAGTAAACTAATCTTTATCAAGTCTAATTGTTGTTTAAGGGTGACCATTCGGTCCATATGGTATAGCCATTCGATCACCAAGAAAACATATGACTGTATGGATCGTCTGATCTGGGTTGGTCGGATGATCATACAATACAAACACCTTATTTGAGTCAAAGTCACTTGAAGATTAAAAGATCATGGAGACTTTATTTCAAGTAAGTGTTTATCCTGTTTATGTGATGGCTTTTAGGCTATTTTCCATCTTCTTGAAAGTTCTTTACCTCAATTTAATCACTAGACAAGTTAGAAAACCATTTAATATAGTTTGGAGCTATGTGTACTTTTGGGTTGCCTTTTAATGGATTAAAACGTGTTAGCATGTTTTTAGATTTATTGGGCTTGTAAGGAAACACACCTTAATCAATTGAAACTGAAAGTTATAAGTATTACTATGTTTTGGTGTGTTTAAAATTACTTAGGTCTATCTAAGTTGATTTTGTGATAAGTTTCACAAAAGGTTTATCTAAGGTCCTATGCTAGGCTTTATCTAAACTCCCTCGTCATCATTTTAGGTTCTAAATTTTGATAAAATACATCCATTACAAAATAAATTCAAGTTTATTCTATTTTATTTATCATAATATGATTCTCTACTAAATAGTAGTTGTACTATATGACCATCCGGTTAGCTTAGGATCGGACGATCCAATCAGTCATGAACATTTAGTGAACCAGTCGGTCAGGCAACATGAACCGAGTGGTCACCATTAAACAATGATTAGGATTGATGATGGTTAATTTAAGCCAAAGCACGTTGGGTCGTAATTAGGCCGGTGCTATCCAAAACTCATTTCAAAATCTATAAATATAAGTTTCAAGTATTGCGGTATGTTAGTTACATTTAATACGAATTTATTGCTAAGATTACTGAATCTTTGTTGACTTCGACATCAGAATATCTTTTGCAGGTAAACTCCCAATACGATCGAATGAAGCGAAGAACGAATGGTACCCAGTGTAAGAAGTTAGACAGATGAAATTTGAAAGATTGTTAACCTCGCCTCCACAACCGAAACAATAATAAATATTATATATTATAAGTAATTAATTTTAAGTAATTCATAAAAAAATAAAATAATTAATAAATTAATAATGTTACACACGTGAATTAATTGAAAATGAAAAACACATTCCTTAAATTTCTTAAAAAAAATTAAGTTATCAATCATGTTATAAGATACGAGGGATTCTAGACTTGAAGATTAAAATATCAAAAAATAAATTTTTAATATATAATGTAAGGCAATCTTTTTAAAATAAGTTATTATAAAAAATAGTTATTATGAATATGTTTTTCTTAATAATTGAATCAACAGTTTTACTTGAATAACATTTCTATTATATACATTTATATCATATCGAAATTCACATAATAACAGTATAATCATCTAGTGATATATTAGGCC


Gene Sequence:
>Vu_04253(-)
ATGATACCCAAGTGTTTTGGGATTAATAAGCATAAGAGGTGGAATGTATTCTTAATCATCACACTATACAAGGTAAGGAATAATATCGTGTCAGCCTCATTGTAGTCGATATCATATCGATTTAGTTACAATTGAGATTTTGTTAATCTTGTTATCTTTCAAGTGTGGATAATATTAAAAGTTAAATCATTTTACAAACATTAGACAAATTATTCTTTATAATTTATCTTTACATATCATATCCAATTAAGTAAGGGCTTATAAGCCTAATATTTATTAGGTTAAACCTTTTTAATTGTCCTATTTATTAGGTTTTTTTCAGTTCAATCCCCATTTTTTAAAAATCTCCAATTGAGTTCTAAATAGTGATAATTTAAATCAATTGAGTCTCTGCCGTTAATTTAGCTTAAAGGGGGTTAAGTTTTTGCTGAGATGGAAGGTTGACGTGTCAATTTTTTTTAACTGACATTCAAAGAGCTATACGTGGAATTTAAAAACATTTTAACATTTTAATTAAAAAATTTTTAAAAAAAGTCATCTTCCATTACAATCAAGCACCACCCAGAATTACTTTTCCCTGTCCATCACCCAGACCCTAAATTCAACAATAGCTTCCTTTCCAGCATATGTAATTCCTGTACATTACACAACAATAATGTCTTGTTAATAATAAAACTTGAACCCTCCAAATACAGTCCATGGAAGTTAACTTAGCAGAAACATATAGAAAAACAATCAACGGTCGAAGTAATAACCATCATCCAGAAATTGAAAGTCACCTCAGCAAAAGCCACTAATGTAATAAATTCTTGGCGGTCCATTCTTGTGAATACCCTCGCAGCAGTAACAGTGGATTTCCCCTGAGTTAGAGTGCCTGTTTTGTCAAACAGTGGATTTCTGGCAACCATTTTTCTGGGTATGCTCCTAGAGCCCCACATCGCTTCACAAGAAACCTCAATTAAATCGGAAACCTTCTTTACAAATCTCTCTCCCCAAAAAGGCCGAGTGGATCCAATTTGGGAAACCGGAGAACCAGTTGGAGAAGAAGCACTACAGAGGAGTCCGCCAGCGACCTTGGGGAAAGTTCGTCGCCGAGATCCGCGACTCGAACAAGCGCGGGTCGAGAGTGTGGCTTGGAACCTTCGGCACCGCCATCGAGGCCGCCAAGGCCAACAACCGTGCTGCCTTCAGGCTCTGTGGCTCAAAGGCCGCCCTCAACTTCCCGCTCGAAGCAGGCGCGGTGGATGCCACAGTCAAGGCCGAAGGCGAAAGGACGCGGCGACGCCAGGAGGAGGAGGTAGAGGAAGTGAAGCTGGTGGTGAAGAAGGAGAAAACAACAGAACAGGAGGTGAACTGTTTTCGGGAGATGTCGTTAACGCCTAAGGTTGAAGATGATCAAAGGTAA