Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04206 LG1 57433485 57434769 PREDICTED: polygalacturonase inhibitor 2
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   signal transduction
Cellular Component   located in   secretory vesicle, Golgi apparatus, plasmodesma, secretory vesicle, plant-type cell wall, extracellular region, plant-type cell wall
Molecular Function   enables   polygalacturonase inhibitor activity
SNP Position Effect Amino acid change
T/C 57433493 5_prime_UTR_variant
T/A 57433562 missense_variant p.Val18Glu
A/T 57433616 missense_variant p.Lys36Ile
T/C 57433634 missense_variant p.Ile42Thr
G/A 57433663 missense_variant p.Asp52Asn
A/T 57433664 missense_variant p.Asp52Val
G/A 57433695 synonymous_variant p.Ser62Ser
T/A 57433797 synonymous_variant p.Pro96Pro
C/G 57433986 synonymous_variant p.Gly159Gly
T/G 57434082 synonymous_variant p.Ser191Ser
T/C 57434215 synonymous_variant p.Leu236Leu
T/A 57434250 missense_variant p.His247Gln
A/C 57434257 missense_variant p.Lys250Gln
T/C 57434274 synonymous_variant p.Phe255Phe
G/A 57434299 missense_variant p.Glu264Lys
T/C 57434382 synonymous_variant p.His291His
T/C 57434386 synonymous_variant p.Leu293Leu
C/T 57434487 synonymous_variant p.Gly326Gly
G/A 57434667 3_prime_UTR_variant
A/T 57434672 3_prime_UTR_variant
A/T 57434675 3_prime_UTR_variant
T/C 57434680 3_prime_UTR_variant
T/A 57434725 3_prime_UTR_variant
A/T 57434727 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04206.1
MSSTFCIVLLVVLSFGSVLSELCNPQDKQALLQIKKDLGNPITLSSWLPTTDCCNRTWQGVSCDTDTQTYRVNNLDLSDLNLPKPYPVPSSLANLPFLNFLYIGRTDNLVGPIPTAIAKLTQLRYLYITHTNVSGTIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPATFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSENLNGLDLRNNRIYGTLPEGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSSYANNKCLCGSPLPACT*


CDS Sequence:
>Vu_04206.1
ATGTCTTCAACCTTCTGCATAGTTTTACTCGTTGTTCTATCCTTCGGCAGTGTACTGTCGGAGCTATGCAACCCACAAGACAAGCAAGCCCTTCTCCAAATCAAGAAAGACCTTGGCAACCCCATCACTCTCTCCTCATGGCTTCCAACCACCGACTGTTGCAACAGAACCTGGCAAGGTGTTTCGTGCGACACCGACACCCAAACATACCGCGTCAACAACCTCGACCTCTCCGACCTTAACCTCCCAAAACCCTATCCCGTCCCTTCCTCCCTCGCCAACCTCCCTTTCCTCAATTTTCTCTACATTGGCCGCACCGACAACCTCGTCGGTCCAATCCCCACTGCCATCGCTAAACTCACCCAACTCCGTTATCTCTATATCACCCACACCAATGTCTCCGGCACAATACCCGATTTCTTGTCACAAATCAAAACCCTCGTCACCCTCGACTTCTCCTACAACGCCCTCTCCGGCACCCTCCCTCCGTCCATCTCTTCTCTCCCCAACCTCGTCGGGATCACCTTCGACGGCAACAGAATCTCCGGAGCCATCCCCGACTCCTACGGCTCTTTTTCGAAGCTGTTCACGTCGATGACCATCTCCCGCAACCGCCTCACCGGGAAGATTCCAGCGACTTTTGCGAATCTGAACCTGGCGTTCGTTGACTTGTCTCGGAACATGCTGGAGGGTGACGCGTCGGTGTTGTTCGGGTCGGATAAGAACACGCAGAAGATACATCTGGCGAAGAACTCTCTTGCTTTTGATCTGGGGAAGGTAGGGTTGTCAGAGAACTTGAACGGGTTGGATCTGAGGAACAACCGTATCTATGGGACGCTACCTGAGGGACTCACGCAGCTTAAGTTTCTGCATAGTTTGAATGTGAGCTTCAATAATCTGTGTGGTGAGATTCCTCAAGGTGGGAACTTGCAAAGATTTGACGTGTCTTCGTACGCTAACAACAAATGCTTGTGTGGCTCTCCTCTTCCTGCTTGCACTTGA


Promoter Sequence:
>Vu_04206::LG1:57431485-57433485(+)
CGAAATTATCTAATTTTGAATAATTTAGTTATTCTCATAAAATTTTAAAAGAACAATGATACTCATACATCTTTATTTATCTACATCTATTATATGTTTGTTTTTTCTTTTAATATCTTTCTTTTTATCACATCGTATAAATTATAAATTTATTATTTTTATTATCTTTCTTTCTCTCTCTATATATATATAATAAGTAGTAATGTATTTTTTTAGATGAATCATTTTTCTAACAATAAATCATTCTCTTAAAATTTCCTATTTCCCTTTTAAAAGAGTAAAGTGAGTAAAAAGTACTCAGTTTCATCAATTGACTTTGTAGTTTTCTTGTTACTTGTGCCAACCAAGTTTCACGTACGATCTTAATGGTGGTATGAATGAACGGCTCCAACTTGTCCGATGCCGTAGCTAAGATAACCACGCTGCATTCATTTCACCATTAACATTGATATGTTAAGATGCCAACTTTTTATTATTTAGTTGGTTAATTATGGTCTTTTTTTCTTTAAACTATAAAACAATTTAAGTTCCTTTTTCAAAGTTTCATTCAACATCTTTAACTTTAAAAGATATTTAGATTTAATCCTCAATAATTAAGTGTTAACTGTTTTTTGACTTGGCAAAAATAGTGTGCCATGTCACCCAATCATTTTTTTACATATGTCATGTATTAGTATTTTCATTTATTTCGTTTTTTTTTTGTTTTTCTTTGTTTCTTTTTTCCTTTCTCCTCATCTCGAGCTGTCTTCATCCTGGTCCAAGGTTTTCAACCTCTTCCTTCTTCTTCATCTTCAGTATGCTTCCTCCATCCATTTTATCTGTTTTTGCATTTTATTTCTCTATTTTCACATTCGATTAACGAGTTGTGTCCCTGGGTGAAGAACATTCAAGTAGAGTGGGAAAATAAGATGATTTCAATGGTGTTGGCGCCTTTATATGTATGACGAATGAAGATTAATTTTGTTGGATTTTCTGTGATTTTATGTTCTGTATGAAAATAATTTTTGGAATTTTTGATAGTTTTGATAATTGGAAGACGAAGTTAAAGCTAGACGTGATAATGGAATTTTGCATGTCGTTGTGGTTGTGAGGTTAATAATAAATGATAGATATGTTGAAGGTGGAAATGGAAAATGATTATGTGTGTTGTGATAGAAGTGTTTTGAAGAAAATGGAGTAGAAAATTAGTTTTATTCTTTAAATTAAATAATTTACTTGTCTTAAACGAGCAGTTGACGTGACACTTTATTTGTCACGTTTAAAAAGATATTAACTACTGAAGACCAAGTATATGAATTTCAAAAGGATAAAGACGTTAATATAACACATTTTAAAAAAATAAAAATTGTTTAATAGTTTTGGAATAAAAAACATATTATCCCTTCTTTATGCAATGTGGTTCCTGGAATGCCACTGTACTCTCAACAAATTCGCCCATTTTACTCTCTATCTGATAATTATGATTTGAGCAAGCTGATAGTTCTGACCAGATTGAAGAATTTGTTCTGAAAATGTCTTCACATTCCAATTCTTAAGTCAATTCTCTACGACATCTCTCTATCTTATGTAGTTTTGTCTTACATCGTATCCAAAATTATTGCCTACTCAGAAGTTGCTAAATGTTGACTAACTTCTCTTACTTATATCTAAATATAGCCATTAGTATATTAATTGAAATATCTTTCGCTTCGTTAGTTATTACTTGTTTTAACGCCGACACTTTATATCTGCTGATTATTTAAACACAAGTAGTGTGATGAGCAGGATAGTGTTTGGTCAAATCAATATGATTGGGTTAAGATGTTTTCACTGAAATCGTTCCTTCCTTGTTCGGGTTAAGAAAACTGGTATTAAGTCTTCTATATACATATAAAACCTCAGCCCAGTGGGCGCGTGCATGCGTGACCTTTCTGAAGACTTAATTGGATGAATTGACTCCTAATAGTCAAATATAGCAGCTTGAACGATATAAAATACCCCATTCTCATCCATTTTTAACA


Gene Sequence:
>Vu_04206(+)
ACACAAATTAAATCCAAAAAAAAACATGTCTTCAACCTTCTGCATAGTTTTACTCGTTGTTCTATCCTTCGGCAGTGTACTGTCGGAGCTATGCAACCCACAAGACAAGCAAGCCCTTCTCCAAATCAAGAAAGACCTTGGCAACCCCATCACTCTCTCCTCATGGCTTCCAACCACCGACTGTTGCAACAGAACCTGGCAAGGTGTTTCGTGCGACACCGACACCCAAACATACCGCGTCAACAACCTCGACCTCTCCGACCTTAACCTCCCAAAACCCTATCCCGTCCCTTCCTCCCTCGCCAACCTCCCTTTCCTCAATTTTCTCTACATTGGCCGCACCGACAACCTCGTCGGTCCAATCCCCACTGCCATCGCTAAACTCACCCAACTCCGTTATCTCTATATCACCCACACCAATGTCTCCGGCACAATACCCGATTTCTTGTCACAAATCAAAACCCTCGTCACCCTCGACTTCTCCTACAACGCCCTCTCCGGCACCCTCCCTCCGTCCATCTCTTCTCTCCCCAACCTCGTCGGGATCACCTTCGACGGCAACAGAATCTCCGGAGCCATCCCCGACTCCTACGGCTCTTTTTCGAAGCTGTTCACGTCGATGACCATCTCCCGCAACCGCCTCACCGGGAAGATTCCAGCGACTTTTGCGAATCTGAACCTGGCGTTCGTTGACTTGTCTCGGAACATGCTGGAGGGTGACGCGTCGGTGTTGTTCGGGTCGGATAAGAACACGCAGAAGATACATCTGGCGAAGAACTCTCTTGCTTTTGATCTGGGGAAGGTAGGGTTGTCAGAGAACTTGAACGGGTTGGATCTGAGGAACAACCGTATCTATGGGACGCTACCTGAGGGACTCACGCAGCTTAAGTTTCTGCATAGTTTGAATGTGAGCTTCAATAATCTGTGTGGTGAGATTCCTCAAGGTGGGAACTTGCAAAGATTTGACGTGTCTTCGTACGCTAACAACAAATGCTTGTGTGGCTCTCCTCTTCCTGCTTGCACTTGATCATTTCCTTTCCAGATTTGGTAATATATGGATGCATAATGTTTGCCTTTGTAAACATCTATAATTCTGTCTCCACCTCATCAACCCTTAGATTGAGAAAATAAGTTTATAAGACATGTGATACAATAAATGCCTTCTATCATTACCCTAAAAGTGAATAATAATATTTACTTTAGGTAGTATACTACTCCTATCTCTCTCCGTGTGTCAAAGTTAAATATATTTTTAATACATCAAGCTTATTTTATTTATTCGTTT