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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04128 LG1 56135419 56140999 PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1
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Annotations  
category   relationship type   keyword
Biological Process   involved in   brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, defense response to oomycetes, defense response to fungus, defense response to bacterium, defense response to fungus, protein phosphorylation, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, defense response to oomycetes, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, protein phosphorylation, brassinosteroid mediated signaling pathway, defense response to fungus, brassinosteroid mediated signaling pathway, defense response to bacterium, defense response to oomycetes, defense response to bacterium, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, protein phosphorylation, cell death
Cellular Component   is active in   protein-containing complex
Cellular Component   located in   plasma membrane, plasma membrane, plasma membrane, plasma membrane, endosome, plasma membrane, plasma membrane, plasma membrane
Molecular Function   enables   protein binding, transmembrane receptor protein tyrosine kinase activity, protein binding, protein binding, identical protein binding, transmembrane receptor protein tyrosine kinase activity, protein binding, protein binding, receptor serine/threonine kinase binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, receptor serine/threonine kinase binding, protein binding, protein binding, protein binding, protein binding, protein kinase activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, protein kinase activity, protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, identical protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, signaling receptor binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, kinase activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, transmembrane receptor protein tyrosine kinase activity, protein binding, protein binding, signaling receptor binding, protein heterodimerization activity, protein binding, receptor serine/threonine kinase binding, protein binding, protein binding, protein binding, protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding, protein kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein serine/threonine kinase activity, protein binding, protein binding, protein binding, protein binding
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
A/T 56135911 downstream_gene_variant
G/T 56136637 downstream_gene_variant
T/A 56136733 downstream_gene_variant
A/T 56138569 downstream_gene_variant
T/G 56139134 missense_variant p.Gln89Pro
A/T 56139138 missense_variant p.Ser88Thr
A/T 56139221 downstream_gene_variant
A/*,T 56139224 downstream_gene_variant
A/T 56139225 downstream_gene_variant
A/T 56139226 downstream_gene_variant
A/T 56139229 downstream_gene_variant
T/C 56139236 downstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04128.1
MVKVSGNQEGDALSALRGNMNDPNNVLQSWDSTLVNPCTWFHVTCNNDNSVIRVDLGNANLSGELVAQLGQLPNLQYLELYSNNITGKIPIELGGLTNLVSLDLYSNKITGQIPVELANLKKLRFLRLNNNSLSGKIPMPLTNVDKLQVLDLSNNNLTGDVPTNGSFSYFTPISFRSNPLLNNIDTQSPPAAAPPANSSGKNNRVIGIIAGAVAVGAALLFAAPVITFVYCKRRKPHDFFSDVAAEEDPEVHLGQLRRFSLRELQVATDSFNNKNILGRGGFGKVYKGRLTNGDLVAVKRLKEERTQGGEMQFQTEVEMISMAVHRNLLRLHGFCMTTTERLLVYPFMVNGSVASCLRDRPEAQPPLEWSKRKARLANDDDVMLLDWVKGLLKEKRLKTLVDADLDGKYEEEEVEELIQVALLCTQSSSFERPKMSEVVRMLEGEGLAEKWEKWWQKEDIIQQNFDPSSLHHAYWPLLNSSSNIPPDELSGPR*


CDS Sequence:
>Vu_04128.1
ATGGTCAAGGTTTCTGGCAACCAAGAAGGTGATGCCCTGTCTGCATTGAGGGGCAATATGAATGATCCCAATAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAATGACAATAGCGTGATCCGTGTTGATCTTGGAAATGCAAATCTTTCGGGTGAGCTTGTTGCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAATTGAGCTTGGGGGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAAAATTACTGGTCAAATTCCAGTCGAATTAGCCAACCTTAAAAAACTACGTTTCCTGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTATGCCTCTGACCAATGTCGATAAACTGCAAGTGCTTGATTTATCGAACAACAACTTAACAGGAGATGTCCCAACCAATGGTTCTTTTTCATATTTTACTCCCATCAGTTTTAGGAGTAACCCCCTATTGAATAATATAGACACTCAATCTCCACCAGCTGCTGCACCACCAGCAAATTCTTCAGGTAAGAATAACCGTGTTATTGGAATCATTGCTGGAGCAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACATTTGTTTATTGTAAAAGAAGGAAACCACATGACTTTTTCTCTGATGTTGCAGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAGAAGGTTTTCATTGCGCGAACTGCAAGTTGCAACAGATAGCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACGGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATCTGCTTCGCCTGCATGGTTTTTGCATGACAACTACTGAACGTTTGCTTGTGTACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGATCGTCCGGAAGCACAACCACCACTTGAATGGTCAAAACGGAAGGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTAAAAGGACTATTGAAAGAAAAGAGGTTGAAGACACTGGTGGATGCAGATTTGGATGGAAAATATGAGGAGGAGGAAGTAGAAGAGTTGATCCAAGTGGCCTTGCTATGCACACAAAGCTCCTCTTTCGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAAAAAGAGGATATAATCCAACAAAATTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTATTAAACTCATCCTCAAATATTCCCCCAGATGAACTGTCAGGACCTAGATGA


Promoter Sequence:
>Vu_04128::LG1:56140999-56142999(-)
ATATTCCACCAGATGAACTGTCTGGTCCTAGATGATCTTTGAAGAAACAAATAGTTACTCAAAGCTCCAAAATGCTGGCTTAGTGCACCGTATATAATTATTGTGCAATGCAGTGGTGAATTGTAGTTCGTGTCTAAATATTCCTTAGCTTTGATCATTGTTACTTCACTGCATGTTCACTGAGCGTTCCTCCTACATTTTGAAAAGGTTCTTCACCTGACATTAGTCATTGTGGGTTGTAGAATATAGTCATGCTTGTTGTTTACTCCGAGCAAGTTAGTGCAAATAGTTTGTTTGTAAGTATTGTGGAGGGAGAATAATCACTATAGAAGAAGGAAGACAAAGAGTCTACTACAATATTCTAAGTACAGTAGCTTAAATGTTATAAAAGGTTTCTTTCTAATAATATGAGATGTAAACTTACATAAAGTTAAATGCTACCACTAATTCTCATCTAATCACTAATCATACACCTAACTTTCCCCCAAAACAATATTTATAATTTATCATACAGCTAACATTCGTAGATAACATCCTATTACCCTTACTACAAATAGAGTTACCAGATAAAATCCTTCAAAAATCACTCCTACTTAATGGTGCCAACATTTCCTATAAATATAATTCCTAGGTAATTAATTTTTTCTACCGTACTATCCACTTACATACAAATATACATTTGTAGTTAATATTTGTACATAAAATTGATTTTCCCTATACATTTTAATCGTACGTAATTAAATCAACATTAGCAGTCTCTTTTAGTTACATTATTGTTACTTATATTTTTTAAAATCATTAATTATTATTTAATATTTAAAATTTAATTACTAAATATTATTTAAAAATTTAAAGTTGACTAATATTTTTTTTTAAATTTAATTTTAGAATTCTATCCATTCAAATAAATAATTTTAAATAAAATTTTGCATTACATTATTTAAACAAGAAATTCAAATTTAAGATACTTCAATTACTCTATACAAATATGTTATTAAAAAATAAAAAAAATAATTATAAGTAATTCAAATATACCTATTTCAAATTTTTAGAATTATTGAATTAGGGAGAGTGTCTTCTAATTTAAAATTAAAATTCATCAAAAAATATATTTTTACTCTCCACTCTTGGGCCATATAGGTTGCATTGAAAGGATAATTTCACCTCATCAACCTAAAAAGTAGAAGTCAAAATAATAATAATAATAATAATAATAATAATTATAATGCTAATTAATAATAATAATAATAATAATAATAATAATAATTATAATAATAATAATAATTATAATAATAATAATACAGTAAGAGACTGAAAGTCAAAGTAAATTAGCTTATAAGTGTATAAGCAATAGCTTACATTGACTCCATGTATGACAACAGATAAGTAAACCCAGACAAACAAAATGTCGCAATTAATTATGCAGAAACATCTTCGTATGCACAGGGCATTGTCGTCGTGGGGACCGTCCTAAGTCTCCAAGGGCGCGTTTTTGACCCTTTCCTCATACTTCTCTATTCAAACTTCTAACACATGCAAATTCTTCTAAAGGTTGGATTTTTATAATTATTATAATATACAAGTAAGATTTAAAACTTGCCTTTGAAATCAATGACCAATAAACCTACTTCCTAATACTATATGAAACTTACTTTCTCATCACAATTTTCTTGAAATCAAGAATAGAAACAAGTGACAGAAGAATAACAAAATGAAGAAATATCTGGGCCAGAAAATGCAACATTCATAGACTTGCCTCTCCTGTCTTTTCTCCATATCCCAATTTAGTGTTGGTGTAACTGAGTTGACTGAGATTTCTTTTGGTCAATTTGCTTATGGGCTTGAAGGGTATAACGGATATCACCTAGTCCTTGAGAGGGGCTCTGTATGAGGGATATTCAAGTGCATGTGCATGAGTGAAGAGAAGGGGCAACATGAAGCAAGTGATTTCATCTTTCAGGTGTTTGTTTCTTCTTTGTGCATTTTTAGTGCTTGACTTC


Gene Sequence:
>Vu_04128(-)
ATGGTCAAGGTTTCTGGCAACCAAGAAGGTGGGTTTTTACTTTTTTCTTTTTTACTGTTTCTGTTCTTGTTGTTGCCTTTCAGCTTTATTGTTTCTGGCTCATATATTAGATTGAGTAATAGAAATGGAGGAGTTAGCATGCAATGTGAAAACAACAATTAGGGGAATAAACTGAAACATAGTTAAGGACGAAATAGAAAGCAATCTTTATTTTGGAGGAGAAATTTCGGTCTTAAATATTTGTATAGTGTGTTGGTGCTCTATATGACTAAAATGTTCTTGAGGAACTTGGACTTATCTCTTTACTTCCTGTATTTCTCAAAATTTCTTTAGAAACACCTGTTTGATTTTTCTACTCCTGTTTATTTAATATATGAAGTGTGTTTAATTGAACTTGAATATTACTTCTATGACAGGTGATGCCCTGTCTGCATTGAGGGGCAATATGAATGATCCCAATAATGTTCTTCAAAGTTGGGATTCTACCCTTGTCAATCCTTGCACATGGTTTCATGTTACATGCAATAATGACAATAGCGTGATCCGTGTGTAAGATATTTATGTTATTTTTACTTGTAGTTTTGTGAAATTTATCATAGGTCCTAAAATTATTTGGTTCGTAACAGAGTGCTCATACAGTGAAAAACCACTTTTCTTTTGTTGGGTAGTGATCTTGGAAATGCAAATCTTTCGGGTGAGCTTGTTGCACAGCTTGGTCAACTCCCAAATTTGCAATACTTGTAAGTTAAGAAAGGGATACGATATTGATGGCTGAATCAGATGTGATTAAGCAAGATTATTCTAAAAGTCAATATGATAACTATCATTCAGAAAATTCCTGACGATCTTTATATACTTGTTACATTATGTTAATGATATGTTTTGAAATGAAAGAAGTGGGTGCAACTATGAAAATTTTTGGTTTTAAGACTCACAGAGGCAGTCAAGCATGAAGATTATTCTTATCACAAAAGTAATATGCTGAAAATTTTCTTGAAAGTTGAAATGTTTCTACACTTTTTCCTGCACATTTTTAGCTTCAGACCTTTCCCACAAATGACGGAAGTGAATTATGTATGATATTCCTTATACTAGAGTAGTCGACAACCTTAAGTATGTTATAGAATTTACTAAACCTAATTTAGCTTCTGTTACATGGAGTAAACATACATAAGATTAGAGATAGAGCTAATAATAAAAACTTGGTGTGCACTGATTCAGATTATGGTGTTCATCTTGATTAAAGGTCTCTTTCTTGGATATCTTTATTGTTTGTAGCTGTGCTATCAGTTAGAAAGCAATACATCAATCAATTGCTGTATTATCTATAGCTAAAGTAGAACATCTTTCATCTATAGATGATGTAAAAGGTTACTATTTGACTTCAAGATTTGGTTAGTCAACTTGGACTAACACAAGATGTTCTTGTTATTTGCGGTAGTCAAAATGCCTATTCACTTAACTTAGAATACTCATTATCCCAAGACCAAATACATTGACGTAAAAGATCTATTTGAGATTTAGTTGTTGTTGGTAATGTTGTGGTGCAAACATTTGTTCGATAATGCAGCGGATATATTTACTAAGCATGTCTTGAATGCCAATTTTCAATGTTTATTGGAGTTGGTTAGTCTTTACTTCACTTGACATGGTAATGAGCAAGTAGACAAATTGGAGTGAGGGTGGGAGTTCAAATTCTTCTACTCTTTAATGCCATTGATATTAACGGTTATGATTTGATTTCCATTTAAACCATAATGTATATGAATATCTTTTAGTTATTCACAGGATCTTTCTCTGCCCAAATCTGAATATCTTTCTTTTGACAGGGAACTTTATAGTAATAATATAACTGGGAAAATCCCAATTGAGCTTGGGGGTTTGACAAACTTGGTGAGCTTGGATCTTTACTCGAACAAAATTACTGGTCAAATTCCAGTCGAATTAGCCAACCTTAAAAAACTACGTTTCCTGTATGAAATTCTTTCCTTGATCTCATATCTTTAATCTGCAGAGCTTATGTAGATCAGTTTCAATGCTGTTTCTTCTTTTTTAGCATTCATAAGATTTATATTCCTACATATTCCTCAATCACATTTGAGTTCCAACAAATCTTCTTGCTACAGAGAAGAATGACTCTGCACAATCACATGACATAGATGCTTATACAAGTTACAAACAAGCTATTACGTGACATAAGCACACACTCACTACACTTTCTACTTAATGATTGTTTTTGTTGTCTTGTTTTGTTACTCTTCTGTTATTAGTTTATTATCTTGAAAACTAAATGGCTCTGCTCCCTGAATCAGGCGTCTCAACAATAACAGCTTGTCAGGAAAAATTCCTATGCCTCTGACCAATGTCGATAAACTGCAAGTGCTGTGAGTTTTACTCCTATGTCTTGATACATTGCAATCCTATTTTGTGTAACCTGACACATGATTATTGAATCTAGTGATTTATCGAACAACAACTTAACAGGAGATGTCCCAACCAATGGTTCTTTTTCATATTTTACTCCCATCAGGTTGGTACAATTTAACTTTGTTTCCATAAGCACACTGAAAGAATCACACTACAACGGTTAGCCAACAGCCAGTTTGGTTCAGTAGAATCCTATCATTTTTTATGCAACACATTACTATTACTATTACCATTAGTTTACTATATTTATATATACTAATAATATTATCTGGGATGAGATATCAAAATTTTATTCACCTATTTCTTTGTCATTACAGTTTTAGGAGTAACCCCCTATTGAATAATATAGACACTCAATCTCCACCAGCTGCTGCACCACCAGCAAATTCTTCAGGTTTGTTTGTATCTGTTTTCTGCTTGGTAATGAATTTAATTTTTTAAAGAATAACCTGACATAAAAATATAAGGTGAAAAAATATAACTCTTAAAAATGCCCTCTGAATTATTTTGGTGGTATTCACTTACGTTTCTTTAACATGATGCATCCATTCCATTCCAACTTCAAATATTTCCATCACCCTTTTTACAATTGAAAGGTAGGTCCGTGGTATTTTCACAAATGCTTATTCTGTAAATGATTTTTGGCTTCGAATCTTTTTAATCTGACAAGTTCTAAGCCAACTATATAAGGGATGGACATCACTCTTTACCCAAAACCTTAAGACAATGGGTTAATGGGTTTTTTACCTTTATATACTGCTCTCCTTTCTCATATCTATCCAATATGGAACTTGGACTCACACTTGGATTCCCAACACTTTGATGGTGTAAATACCGTAAACATAACCTCTGCATGCTTAAGGTACATGTGCTGATGATCTTATCGCTGAATCAGAAGAGGCAGAAGCCTGAAGTGCGGAGGGTGTACTCTAGATAGAAGAAAAGTTGGGTTAATAATAATGTTGAACTTTTTCCTGTGCTATTGAACGGGAAGAAAAGTTTTTGAACTGAGTAGTAGTTTCCCATTTAATCCTGTTAATCCATGTAGGTAAGAATAACCGTGTTATTGGAATCATTGCTGGAGCAGTTGCTGTGGGTGCTGCACTGTTGTTTGCAGCTCCTGTGATTACATTTGTTTATTGTAAAAGAAGGAAACCACATGACTTTTTCTCTGATGTTGCAGGTTCGTTGATTAAAAGTTACTTAGTGATCAAAGCTGCATGTGATAGCCATAAATGACTGATTTTTTTTTTTTGTCCTTCACTGGCAGCTGAGGAGGATCCTGAAGTTCATCTTGGTCAGCTTAGAAGGTTTTCATTGCGCGAACTGCAAGTTGCAACAGATAGCTTTAACAACAAAAACATTCTTGGTAGAGGTGGATTTGGCAAGGTTTATAAAGGACGCTTAACAAATGGAGATCTTGTAGCAGTAAAAAGACTTAAAGAGGAACGAACCCAGGGTGGGGAGATGCAATTTCAAACGGAAGTGGAAATGATCAGCATGGCTGTGCATCGAAATCTGCTTCGCCTGCATGGTTTTTGCATGACAACTACTGAACGTTTGCTTGTGTACCCTTTCATGGTTAATGGAAGTGTAGCTTCATGTTTACGAGGTATCCTTACCAGTCTACTTTATCAGAGAGGATTAATGTGATATGAAAAGAACCTTTTCATTTACCCAAATCTGTTTCTCAAGTTCAAAAAGAAAAAACCCAGTATTTTTTGGTTGCTATGCAAACTTTTTCACTTCAAATCTTTTGCAATATTTCTTACTTATTCTTTGTGAAATAAAAATTATGTATGTCTGATATGTTATATCAGAAGCTTACGTTTGATCCTAACTGAATTTTGTTCACACATTCATCCAATTTTGCTTGACTACATCATTTAATCTTGGTCAAAATAGAGAATCCAAATCATCTCTTTTGCTAAATAGCAGAAAATCTGCTAGAATTTCTTGTTAAATTTCTATATGCTTTCAAATTAAAAATGCTTTTATGCATATATATTGTATTTATGTAGATCGTCCGGAAGCACAACCACCACTTGAATGGTCAAAACGGAAGGGTATTGCTCTAGGAGCTGCAAGGGGCCTTGCTTATTTGCATGATCATTGTGATCCAAAGATTATTCATCGTGATGTGAAAGCTGCAAATATATTGTTGGATGAGGACTTTGAAGCAGTTGTTGGAGATTTTGGTTTAGCAAAGCTAATGAATTACAAAGATACTCATGTTACTACTGCGGTACGTGGTACTATTGGCCACATTGCTCCTGAGTACCTCTCAACTGGAAAGTCTTCAGAGAAGACTGATGTTTTTGGATATGGTGTGATGCTTCTTGAACTAATAACTGGACAGAGGGCTTTTGATTTAGCACGTCTTGCCAATGATGATGATGTCATGTTGCTCGATTGGGTAGGTATTATGTTTGCAAAAAACTATGGTATTAGTACTTCTTGTTCCACTGTCAGTCATGTGTTTTTTTTTTCCAAAAAATTTATTAGTTGAAGGTGAACTAATAGAAGGAAATATATCTGCACTAAATATTCTTGTTTCAGCACAGGATGAGGAGTTCTCGTTTATTCTTCTATATATTGGTTGAAATTTTGAAACCTCTCTTTGTGCTTCTTCTGGTTTTTGTGTTGTTGTAAAACTACCTTTGCTTTGAAACAAAATAAAGAATTGTTATGTATTCCTTTTTCTGTTTCAATTTCTAGAACCTCATCTTCCTCGTTGCTGTTTAGTTTGTGGTTGTTGCATTAGCTATGCACTGGAGTTAACACCAATCGTTAATGGTTTTTGTTGGAAAATGACATTATTTTTTTATCTCAGGTAAAAGGACTATTGAAAGAAAAGAGGTTGAAGACACTGGTGGATGCAGATTTGGATGGAAAATATGAGGAGGAGGAAGTAGAAGAGTTGATCCAAGTGGCCTTGCTATGCACACAAAGCTCCTCTTTCGAAAGACCAAAGATGTCTGAGGTGGTGAGAATGCTAGAGGGTGAAGGTTTGGCAGAAAAATGGGAAAAATGGTGGCAAAAAGAGGATATAATCCAACAAAATTTTGACCCCTCCAGTCTCCACCATGCTTACTGGCCATTATTAAACTCATCCTCAAATATTCCCCCAGATGAACTGTCAGGACCTAGATGA

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This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

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