Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04083 LG1 55501450 55502049 zinc-finger homeodomain protein 2-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 55501454 synonymous_variant p.Arg120Arg
T/C 55501458 missense_variant p.Gln119Arg
T/C 55501460 synonymous_variant p.Gln118Gln
T/C 55501461 missense_variant p.Gln118Arg
G/A 55501462 stop_gained p.Gln118*
T/C 55501476 missense_variant p.Asp113Gly
T/A 55501499 synonymous_variant p.Gly105Gly
A/G,* 55501556 upstream_gene_variant
A/C 55501570 upstream_gene_variant
G/A 55501571 upstream_gene_variant
T/A 55501594 upstream_gene_variant
T/C 55501597 upstream_gene_variant
T/C 55501607 upstream_gene_variant
G/A 55501611 upstream_gene_variant
T/C 55501623 upstream_gene_variant
A/C 55501630 upstream_gene_variant
C/T 55501638 upstream_gene_variant
A/G 55501640 upstream_gene_variant
C/T 55501663 upstream_gene_variant
G/C 55501689 missense_variant p.Pro92Arg
T/C 55501692 missense_variant p.Gln91Arg
G/A 55501696 stop_gained p.Gln90*
T/C 55501705 missense_variant p.Thr87Ala
C/G 55501706 missense_variant p.Leu86Phe
C/T 55501739 synonymous_variant p.Glu75Glu
G/C 55501754 stop_gained p.Tyr70*
T/C 55501763 synonymous_variant p.Pro67Pro
G/A 55501778 synonymous_variant p.Cys62Cys
G/A 55501802 synonymous_variant p.Phe54Phe
T/C 55501806 missense_variant p.Asn53Ser
T/A 55501810 missense_variant p.Ile52Phe
G/A 55501825 stop_gained p.Gln47*
G/A 55501851 missense_variant p.Ala38Val
C/A 55501865 missense_variant&splice_region_variant p.Lys33Asn
C/T 55501868 splice_acceptor_variant&intron_variant
A/G 55501880 upstream_gene_variant
G/T 55501901 upstream_gene_variant
A/G 55501934 upstream_gene_variant
G/A 55501941 upstream_gene_variant
G/A 55501993 synonymous_variant p.Leu19Leu
G/A 55501996 synonymous_variant p.Val18Val
T/C 55502010 missense_variant p.Ile14Val
T/G 55502015 missense_variant p.Tyr12Ser
A/C 55502016 missense_variant p.Tyr12Asp
T/C 55502023 synonymous_variant p.Pro9Pro
A/T 55502030 stop_gained p.Leu7*
C/T 55502033 missense_variant p.Gly6Asp
G/T 55502041 missense_variant p.Ser3Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04083.1
MGSDLGLQPCDYVILVCVLGLHIFLNLVLGCIKGAFGAAAIRYRECQKNQAINFSGHAVDECCEFMPTAYDNTLEVVICAAYNSRLTLSQQPLVAISSCLRLTKEESDRGLATTMEVHNKG*


CDS Sequence:
>Vu_04083.1
ATGGGGAGCGATTTAGGTTTGCAACCATGTGATTACGTCATTTTGGTTTGTGTCCTCGGACTCCATATTTTCTTAAACCTTGTACTGGGTTGTATTAAGGGGGCGTTCGGCGCTGCCGCAATACGGTACCGAGAATGCCAGAAGAACCAAGCCATCAACTTCAGCGGCCACGCTGTCGACGAATGCTGTGAGTTCATGCCAACAGCCTACGACAACACTCTAGAGGTCGTGATTTGCGCCGCCTACAACTCGCGATTGACACTTTCACAGCAGCCCTTGGTGGCTATTTCTAGTTGCTTGCGATTGACGAAGGAGGAGAGTGACAGAGGACTTGCGACGACCATGGAGGTTCACAACAAAGGTTGA


Promoter Sequence:
>Vu_04083::LG1:55502049-55504049(-)
GAAACAAGCACCAGCGAAGGATTCTTGTTATGGTGAATGTAATAGTCTGTGTGTTGTATCTTGCAATGATGCGAGAGTAACAAAGGGAGTAGCCATAAAAGGAGAAGAAAAGGCAGGAAAGCCAAGAACGAAAGGTAGAAGATGAAGATTTGGACAGTAACAGAATTGGTTGCGAAAGTATGTGATGAAGAATTAATTTTCTCCTGATACCATGTTATGAGAAAAGAAAAGATGAAAATTGTGTATCTTAGATCTATGTGGGCATTCTGTTCCAACCGTTGTCGGGCCACTATTTGACCACCCACTAATTATAATCTCACGCTCGAGATGTCTATACCTCGGTGTGAAGGGAATGTGTTGGAAGTCTCACATCGACTAGAGATAAGGCCAAATTATAATATATAAGTGGAGTGCAAATCTCACTATACAAGTCGATTTTGTGGGGTTGAGTTAGGCTTAAAACCACTTTCTAATATAAATAAGTAGAATAAATTTATATAACCTTTTTTATGGTAAATTATAAATTTGATACGAACATAAACATGTATACTTTGAATTGAGGACCAAGATTGATTTGAAATAAGTAAAGGATAATTTTGAGAAAATCGTGAATATGATTAATGAATTGAATTATTTAAAAGTTGTATTATTCAAATGCTTTAGGAATTACTATTGAAATATGGTTTGATTTTGCATTTGGGTTGCTTTTTTGATATTTTCATTCAAGTGGAGGATTTTCACTCAAGAAAGAATATAATAAAGACCAAGACCTTACTTTTTGTCCTAGTTTAATTCATGCAAAATATTTTTTTCTCAAAGTGAAAAGATTATCTACTTAGACTAAAATAACTAAAATAGAGTTGAAAATAACTTTGTTTTCAACCGGTAGAACATGAGGCTATAATTAAGTTGTAGAACATGTAAGAGAAATAATGAAATATTGTAAAACTTATTCTAAGAGACATTTCAAATGTGCTAGTTGGTTAGCCTATCTGGCCTCGCTTGTGGCCCGACATATTAGTAGGCTAAACCGGTCGAAACACTACGAGCTGATAAAGATTCAAAATTCTGACTCGATTAGTTTCTATTCATTGGAATTGGCGGACTGGCCCTTCTCACTTTTCCACTCATTTTTAATAAACTTTCATTTAATTGAGTAACTAAAATTTTTATATTCTTTTTAGGACTTATCATTTAATTTTATAATCAAGTGAGATGATATGCGTACTTGATTTTGTAGTTTGAAATCACAACATTATGAACTTAAATAAGAATAAAAATAATTTTCTAGAACTGTAACAATATTTCGGGAAAAATGGTAGCATTCTTTTTTTAATTGAACCAATAATACCCTTGCCGTTAATTTTAGTGGACGGCGTTAACTTTAGTGTATCGTGGAATGCTGACCCAGCAATTAATTATGATGTGGCGCATGTGATGGAATTTATTTTATTTTAAGTTTTAAATAAAATCCTTTAAAACAAATTAGGGTGCCCCTCCTCCGCCACCTCCACCTCGGCTACAACTTTTTCTCCGGACAGATTCCTCCTAAATATGGCACCTGACAGTACCTCTAGTACCTTGCCATCTCCGCAACGAGCTCACGGGAAACATCCCTCCGGAGCTTGGAAACCTCACCACGCTTTGCGAGCTCTACATTGGAAACCTCACTCTTCCTCTTCCAAATCCCCTTTTGACTTCAAACCTTCCTCACCTTCTTCTTCTTTTCCATTCTAATCATATTATTTTTATTTTTCTCAAACCACCATCAGACATTCCAACAAAACAACACCAACTCCTCCATTAATCGGTAATCTCCTTCAGATAGATTCTCTTTAGTTTTTCATTTTTTGTTTTATTTTTATATATATGTATATAGTTTTTTCATTTTCACGGTCATGTGTTGACGATTTCTCCCCTTTTTTTGTCCGTTTGTTTCCAGCACTGCAGAATCTTTTCTTTTAATTGGTTTCTGGGAAGATTTGGTTGATTCGATCCTC


Gene Sequence:
>Vu_04083(-)
ATGGGGAGCGATTTAGGTTTGCAACCATGTGATTACGTCATTTTGGTTTGTGTCCTCGGACTCCATATTTTCTTAAACCTTGTACTGGGTTGTATTGTAAGAGGGGGACCTAGTGTGGGAAACAAAAAAAACATTGTCGGATTCCTTGCATCTGAAGCTCAAAAGTCAATGGCGAGGGACAGAAGGGGGCGTTCGGCGCTGCCGCAATACGGTACCGAGAATGCCAGAAGAACCAAGCCATCAACTTCAGCGGCCACGCTGTCGACGAATGCTGTGAGTTCATGCCAACAGCCTACGACAACACTCTAGAGGTCGTGATTTGCGCCGCCTACAACTCGCGATTGACACTTTCACAGCAGCCCTTGGTGGCTATTTCTAGTATGCAGGTCCCGTGGCGATTTCGTGGTGGTGGCTTCAATTGAGTTGATGTGTGATTCGCGTGACTGCCATGGAGAAGATGATGGAGTAGATTCTCGCGCTAGAAGTAGATGCATGATTCTGGGTTCTGTGGTTTAATCTTCTGCAGGTTGCTTGCGATTGACGAAGGAGGAGAGTGACAGAGGACTTGCGACGACCATGGAGGTTCACAACAAAGGTTGA