Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04024 LG1 54685099 54691067 PREDICTED: GATA transcription factor 19-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   negative regulation of gene expression, regulation of flower development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, meiotic cell cycle process, regulation of flower development, regulation of flower development, RNA processing, protein modification by small protein removal, meiotic cell cycle process, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, protein modification by small protein removal, mitochondrial mRNA modification, RNA processing, mitochondrial mRNA modification, organelle organization, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of flower development, regulation of flower development, regulation of transcription, DNA-templated, meiotic cell cycle process
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, identical protein binding, protein binding, zinc ion binding, protein binding, protein binding, identical protein binding, protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding, protein binding, protein binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, transcription cis-regulatory region binding, protein binding, protein binding
SNP Position Effect Amino acid change
A/T 54685101 splice_region_variant
A/G 54685105 3_prime_UTR_variant
A/G 54685319 3_prime_UTR_variant
G/T 54685327 3_prime_UTR_variant
G/T 54685412 intron_variant
T/C 54685464 intron_variant
C/A 54685868 intron_variant
A/T 54685872 intron_variant
C/T 54686013 intron_variant
T/G 54686054 intron_variant
C/T 54686118 intron_variant
A/T 54686208 splice_region_variant&intron_variant
G/C 54686244 intron_variant
T/G 54686397 intron_variant
T/C,A 54686635 intron_variant
A/G 54686689 intron_variant
C/T 54686921 intron_variant
A/G 54686987 intron_variant
A/G 54687519 intron_variant
G/T 54687614 intron_variant
G/T 54687665 intron_variant
G/A 54687989 intron_variant
G/C 54688069 intron_variant
T/C 54688100 intron_variant
C/G 54688267 intron_variant
G/A 54688381 synonymous_variant p.Asn174Asn
T/G 54688489 intron_variant
T/A 54688677 intron_variant
A/T 54688747 intron_variant
T/C 54688748 intron_variant
T/A 54689085 intron_variant
T/C 54689100 intron_variant
A/T 54689202 intron_variant
A/G 54689206 intron_variant
G/A 54689224 intron_variant
A/G 54689227 intron_variant
T/C 54689258 intron_variant
C/A 54689371 missense_variant p.Arg122Ile
T/A 54689372 stop_gained p.Arg122*
C/A 54689438 intron_variant
T/A 54689439 intron_variant
C/T 54689499 missense_variant&splice_region_variant p.Arg108Lys
A/G 54689504 synonymous_variant p.Asp106Asp
C/T 54689516 synonymous_variant p.Gln102Gln
C/T 54689648 intron_variant
G/A 54689666 intron_variant
G/T 54689838 intron_variant
T/C 54689858 intron_variant
T/G 54689974 intron_variant
A/G 54689985 intron_variant
C/T 54690042 intron_variant
C/T 54690113 intron_variant
C/A 54690129 intron_variant
C/A 54690208 intron_variant
A/G 54690370 intron_variant
C/T 54690392 intron_variant
A/C 54690485 intron_variant
G/A 54690489 intron_variant
G/T 54690709 missense_variant p.Thr49Asn
G/A 54690728 missense_variant p.Pro43Ser
A/G 54690753 synonymous_variant p.Ser34Ser
G/C 54690862 5_prime_UTR_variant
G/A 54690916 5_prime_UTR_variant
G/T 54690937 5_prime_UTR_variant
A/G 54690946 5_prime_UTR_variant
T/G 54690972 5_prime_UTR_variant
G/C 54690993 5_prime_UTR_variant
A/G 54691044 5_prime_UTR_variant
G/A 54691051 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04024.1
MDTVNNRSQNGEEQPPPPGTALAMVDAFHYSNGSDGGEEAATPLGHASTAVHTRTSELTISFEGEVYVFPAVTPQKVQAVLLLLGGQETPNTVPTPDFLLQQNSQDIREINDPSRCSKLSRRIASLVRFREKRKERCFEKKIRYTCRKEVAQRMHRKNGQFASLKEDYKSHAENWDSSNAIPGPESTERRCQHCGISEKSTPAMRRGPAGPRSLCNACGLMWANKGTLRDLTKAGRIAFEQNDLDTSADIKPSKAEAEHSCAKQDKEGSPEETKPVQMDSRRSPEKTNEQFLIGTAESVTDNLSIQVENHALSLHEQDTLEDLADASGTEFEIPAGFDEQVDIDDSNMRTYWL*


CDS Sequence:
>Vu_04024.1
ATGGATACTGTGAATAATCGCAGCCAAAACGGGGAAGAACAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGGTGGATGCTTTCCATTACTCCAATGGTTCTGATGGTGGGGAAGAAGCAGCCACTCCATTGGGCCATGCTTCAACTGCTGTGCACACCCGAACCAGTGAACTCACCATTTCCTTTGAGGGCGAAGTTTATGTTTTTCCTGCTGTTACCCCACAAAAGGTGCAGGCTGTATTATTACTTCTGGGAGGGCAGGAAACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAGAACAGTCAGGATATTAGGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGA


Promoter Sequence:
>Vu_04024::LG1:54691067-54693067(-)
TAGTGGTTAACCAACATAAATATGCCTTAGAACTTTTATCATATCCTGGTCTTCTCTGTTGTAAAGCAGTATCAACACCCATGGATAGCTCCATTAAGTTGGGAGCTACTATTGGCAAATCACTCTCATAGATCCACTCTTATAGAAGATTGATAGGAAGACTTCTTTATCTTACAACTACACAACCAGACATAGCTTTTGTGGTGAATCAACTTAGTCAATTCTTATCTGGCCCTACAGATCAACATCAAGCAACTGCTCACAGAGTACTTCGCTATATTAAAGGCTACTTAGGTGTGGCCTTTTCTATCCATCATCAAACACTCACAAGCTCACCACATATAGTGACTCTGATTGGGCTGGTTGCATTGACTCTAAAAAAATCAATTACTAGGTATTGTTTATACACTAGTTCCTCTTTAATCTCGTGGCGATCCAAGAAGCAAACTACTACAACACGATCGTCATGTGAAGCTGAATATCACGCACTTGCAGCAACGGTGTGTGAAGTACAATGGATCTTTTATCTTCTGTAGGATTTACAAGTTGGTGAACCTTCTCCTGTGTCACTTTTTTTGTGACAACCGCTCAACAATTCATATTGCTCATAATCTCAACTTCCATGAACGTACAAAACATATATTGTTGGATTGTCACATTGTTCGGGAAAAACTCAACCAAGGCCTTATTCATCTTCTGTCTGTCCCTTCATTGCAACAATTGACTGACATTTATACAAAATCTTTGACGCCTGCACCTTTTAGATCTATTTTTTCTAAACTGAAAATGTTTAATATACATTCTTCAATTTGAAGGGAACTAATACATGTCATCAAATTAATTTCTTTGCATTTGTTATGATATTTATTTTTATTGTTTTGCGTTTGTTATGATATTTGCTTTTGTTATGTTTTTCTCTTTTTAAATTTGTTACTTTTTTCATTTATATATGTAATCATTTGCGTATTTCACAATGAATAAAATTAATCTATTCCAATCTTCGGTTATTATTTTTGTCATGGAATGAGTATTCAATATGTTGGTTAGTTATTAGTATGTAGTAAAATGTTTTTAATAGGAGTCTTTCAACTAAAAATTATTAAAATATAGTTTAGGATTTTTTTACCAAGTATTGAAAAACTATTTATGTATAATTAAATTTGAAAATAATTAAAATGTAACTATATCTAATTAAAATGTATAATTTTGAAATAAATAAGATCTTCTATAAAAGTAATTTTTGTTTCTGAAGTATATATCTTTGATTAAGAAAGATCTACGTTAACTTTTTGGTTAAAATAAAGATTAAATATATTTTAATAAGGAGGAGAGAGAGATGATTGACATACTTGTAGTAGGACACATTTCATAATAAATGTCAATGATTCTCTAAAATAGAATTAAGTGAACTTATTATTTAATTAATTTAAATAATTAGTGTGATTTGAGTGACCCACTCTTTTAAGAAATGAAATTGAAGAATTTCTCCTGTTATTAGCAGGTACAAAAGCTTTAAAAAAAATCTGATTATAATAAATTGTAAAAATGAATTATTTTTAATATTTCTTTAAAAATATTTAAAACTATTATTTCCTAATTCTGTTCCAATACTTAATTTTGTTTTGTAAGAAATTTATCTCTAATTTGTATGCATTTTAGTTTTTCAGTTTCAACTTTTTTTTTTAATTTAATTTACATAGTTTAGTAATTGTTTAAATTAATTTGCTCACAAGTAAAATCAATGAATAGAAATATGAAAAGAAATGATATAAAATAAATGAATTTAGAATTTTATTTAAAAAATTAAATTCAGAACAATTAAAAATACATATTTTTGATGTATCATCTTGCTTAAAATTTAATTAGTACAGGGATGGATTTAAACATGTTATGTCCCACCAACCATAGAAACATATAATTGTCAAAAAAAAAAAAATACACAAAATTTGAATATGGATGATGAAATTTTGATTAATATGTTTTTTATTCTGCTCTTGAGT


Gene Sequence:
>Vu_04024(-)
ATTGTTTCTCTGGCTGCGCTGTTTGGTCTGGGAAACACAACTTAATCAAATATTTTGCATTTCTATTCTTTTCCCCACTCTTTCTCTATTCCTTCAATCCTTCTTTTTGTCTCTCTATTCTTTCACAATCCCACTCTTCTTCTGCTTCCTTCTAGGGTTCATTAGCAAACTTCTAACACACTTCCAAAATTTTTTAAGAGGGATGCTACAGGAATGGATACTGTGAATAATCGCAGCCAAAACGGGGAAGAACAGCCTCCGCCGCCAGGGACTGCGCTTGCTATGGTGGATGCTTTCCATTACTCCAATGGTTCTGATGGTGGGGAAGAAGCAGCCACTCCATTGGGCCATGCTTCAACTGCTGTGCACACCCGAACCAGTGAACTCACCATTTCCTTTGAGGGCGAAGTTTATGTTTTTCCTGCTGTTACCCCACAAAAGGTTCATTTTATTCACTCTCAACTTTTTTATTTAATACCTTGGATCGATTGGTGTGGAAACTTGGCACTATGTGGAGATTGAAGTGTTTGAATTTGGTTTAACTGATCCTTCAGGAAAAAAACTAAAATGGAAAAAAACTGTTTGATGTGGATTTCTTAATTCATGTGTTGGTCACCCGTGATGATATTTTTATGTCGAATTAAAAGAAAAAAATTGGGAAGTTATTGCAGAAGTGTAGGTTACACCCAATCATTGTTTTCTTGAAATGGATTAAAGTTTTTTGCATAGAGTGGTGGAGGGATTTCTCAATGTTTTTCTGGGCTAGTAGGTTGTAGTTTTCGTGTTTTTCTAGGTTCTGTGTTTGTAATGTTATAGAAAGACTGAAAGGAAAAGAACAAGTTGTCTTATAATGAAACTCGGCAATTGTATTATTGATTATCTTCAGATTCTATTGTCATGCACAGAAGAAATTACAGGGGTTTAACAAAGACATTCCTGTCTTCTCTCTTTATAGCAGAAAGTTATTTACTCGTATTTTCCTCCCACGCATAATTATTCAACCACGAAGAGGTTATTTGAGTCTTGAGTCTTGAGCTGTGCCTGATTGTTGTCATGCAGATTGTGTGTCTGATTGTGTCATGTGGATTGTTTGACAAGTTGTCTTTTCTAGCTGTATTTTTAATTTTCTCGTTCACCCTTTGTTCATTTGTGCTCATTAAAGTGTTGCTCCCCTTGATGCCTGGCTTCTCCTCTCAGTATTCTATTGGCACTGTGATTGGTTTTAGTTGCATGATTACAAAACCTGATGATTTTCTTATATTTGAATGACCCCTATGCTCCAACTTTAATGTGGATTTCAAATTTTTTAGATGGTCATGAGTGATTACTTGTTCCCTGATAAATTATTCAATTGGATTGGATGTGGCTCCCAATTAATTGTGCTCTATTGTGGCATATTTACACCACTTCTATAAAATGGTTGGACAATTTTTGAAGATTGATAATGCCTTTATTTGTATGAAATGAAATATAGGTGCAGGCTGTATTATTACTTCTGGGAGGGCAGGAAACACCAAATACTGTCCCCACCCCGGACTTTTTGTTGCAGCAGAACAGTCAGGATATTAGGGTATATCTTCAGAAATTGCTTTTCCTTTTGAAACATTTTTCTCTTAGTGTTCCTAATAAGTGTTTTAAATCTTGTTATTATGTCAGGAAATAAATGATCCTTCCCGATGTTCAAAGCTTTCCCGAAGAATTGCCTCACTAGTTAGGTTTCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAATACGATACACATGTCGTAAAGAGGTTGCCCAGAGGTAGGGATAGGGTAGTTGGAAAGTAGAAGCTCTGAACATATTTTGTTTTTTCCCAAAATTATTTACACTCCTGTATCATAGTTTTTCATTTTATATTATGAATTTCTGTACAGACATTTATAAAGTGTTGAGAAAGAAATGCTTATTATTGCTGTGAATTACTCTCCTCTACCATGAAAAGTGCTTAAATTGAATTATCATTTTTTATTTTAGAAGATACACTTATCTCTCCCTGGTGATTTTTATGTCATATAATTTAGTTCATTTTGATGTCAATGAGCCCCTCAGGGTCATTTTTATCTTTCCTTTGATCTTAACATTATTGTTGGCTACTAATTTTGAATCCCTTTTATTAAGAAGATGAATTAAAAATTTCAAGTGAAGTTTCAAAGCCAATAATGTGAGTATGCAAGGCTTCACTCTATTCATAAAATCCTATTAATAATTCAATTTATAAAATTAGCTTCTGACAACCTTAGAAGTTGAAGAAAGTATAAGTTTACTTGTAGTTACTCTATTTGTTAAGACTATTTTTGGTTAAACAAAAATTGTGAGCTGACTTGGTATTGAGTGAATACTTGGCTCACATCTGTGCTTAACAAGTAACATCCCCCTCATGCCTGTACCCCTGTTTCTTATGGAAGCATTTATGGTGTTTGAAGTCTGCATTGGTGATTGGTATTTTAGTATTGTGTTTCTATCTTGTAAAAGCATTAGCTTTCAGAATAAGAATGGGAATTTTAGTTTTGACCCTAATACGTTTATGCTTTGTTTTTCCTCTAGATGGTATAAGCTGGTTTTCTTGGGATTGACAATACTTGGTTATTTAATAGGATGCATCGTAAGAATGGACAATTTGCATCACTGAAGGAAGACTACAAATCTCATGCTGAAAACTGGGATTCAAGCAATGCTATTCCTGGGCCAGAATCTACGTGAGTTTCAAAGTTATTCCTTTTGTTTGAGTCGGATGGATGCAATAACTTTTATTCTTCATCTTTTATGGATTGGTTCTAATATGATTATTTTTGTGTTGCATCTGTCATTGTTAAGTGAACGTAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCTATGCGTCGAGGACCTGCAGGTCCAAGATCTCTATGCAATGCCTGTGGGCTTATGTGGGCCAATAAAGTAATTAATATCTCTTTTAGCTTAGCGTGGGACTTAGTTTCTTGTTATTGATTGTTGCAAGTGTTGCTTTCCAGAATCAGATATGACATGTTGGTCTCCCTTTTGTAACTTTATTTTAGACTAACTGATGGCCGTGCCTTAAACACTGTAGCTTTTGTTGACTAGAATGTCATCAAATTTTAGTAAACCTATATTTTTTTAAGATTTCTTTTTAACCTTTTGTCTGCTCTTATTGCCTAGACTTTCATCTTTAGTGACTTGAGTCATTCTGAATGTGACCTTTTGGCATCTCCGACAAGTGATAACTGTTTGACTTATAATTTGAAAACAAGGATTTTGTGTCATCCTGAAGATTATTTATTCATAGGATGTTCTGTCTTTCTGTTTCAGCAAGAATAACAATTTTCTGTCTAGTCAGCATCTTATCTATTGCAGTTATCAACTCATTGTTAATCATAGTCCTAGAATTTTGTGAAAGATGGTTATTTTGCATGTCTGGATTGTTGTGGCCATGAGAAGATAGTTTATTACCAAGTATCAACTGAACAAGTTCACGTTTCCATCTACCCAAATACTGATCTTAATTTTCATGCCTTATTGATTTGAAGGGAACTCTGAGAGATCTCACCAAAGCAGGAAGGATTGCTTTTGAACAAAATGACCTGGTATTTTTAATTTTTTTATTCTCATGCAACAATTTCTTTTCTTCCATTGTCATACCTTCTCCTATTGTAATTAACCAAGATTTAAATATGTATCTTCATGCTTTATGTCAAAACGGATAGACAAATTCATCTAAGGCATTGTCTACATCACACTTTTAAAAACATCTAGATCTGTTTGTGTGAAAAGCAGGATGGATCTGGATCCTCTTGGGCACTTACATGACCCTGTTATATGATAAGAAAGGTATACAAACTGTCCTGTGCTGAAAATGATTTTGGGACCACTACAACAGGCATTGCCTTTTGTCTCATAAAATGGCTTGGTCATAAGATGGCCACACATGAGACGATCCAAATGGAAATATGTATTAACTAAGGATGTGAAGGGGTTTGACAAACTTGCTCTGTTACTTATGGCTAGGACACAGTTTAGAGGAGAGACTCTCTTCACACATAATTACATGATAACAAAAGTAAATATTTGTTATTAGTTGGTCTGTTGTATAATATGTAAAAGATATAAGCATTCTTATTATGATTAAACTGTTTTCAGAAATTATTGTTGATGAAATATGACTAGATAAGGTGTTAGGAGATGACAATATGAAAATTTTGGCATAGCAGTCAACATTTTTCAACAATAAATACTATGAAGATATAGCTTGTGTCTATTCCTTAACCTTTTTTGTTAGGTCTACTTGCTCGAAATCTGAAGAAATACTTTATTCTGTAATTTTGCTCCCAGTGGTCTCCAATTTTTAATTTCTGATATGATCTTTGCTCAAAAGATGTTTGAAATTTCAAGTCTAACAATATTCTCTTTATTTTAAGGATACTTCAGCTGATATAAAGCCTTCAAAAGCAGAAGCAGAACATTCTTGTGCCAAGCAAGACAAAGAGGTACTAATGTTAGAATTTTCTTAGCAAATTAATAAAAACTTTATTTTGTTCATGTATAACTGTTTCTTTAACCTTTTTGTTCTTGCGGCAATGGTAGTCTCCTTCCTTGTTTACCAAACTTTGACAAGGGTTATAAAACTGCATGAAAACTCTTCGTTTTTTAATATCAGTTTATTGTTTTCTGAGGGTCCATTCACTTTTTTTTCAAAGTTGTGCTTGCTGATGCTGATTATTATCAATGAGTTGACTTTTGAGTACTGTTTGCATGATGGAACACTGATCCTCATGCTGACACTGTTTCCTTGGCTATGGATTTGTAATTTTTATTTTTTAATTTATCAGGGAAGCCCTGAGGAAACAAAGCCTGTGCAAATGGATTCCAGACGGTCACCTGAGAAGACAAATGAGCAGGTTTTATCTATTTCTGTTCGAATTAGTTAATTTATTTACATTTTTCGATGCAATTTAATGGAACTTAATTTTGCTCAATATATGATGAAGAAATTCTATTTGCTTATATCAGATTATGCAGTTTACTTTCATTGAATAGATTATGCAAAAATTGACAATTTAATTAACTGTTAGTTGACTCCCTACTAAAATTGTGTTTTAGGTCTGGTGTGGATAATGATACTTGTTGTCATAGTCCTTTGGTTTGTTCATAGTAGCTTGTATGGCATTTTGATTTTGGAACTCAGGGTGTATATTAAGAATATACCTTAAAAGCTTTTCAACTTTTGAATATTGTCCTTCAATTTAATTTTGTGGGTTTGCAGTTTCTTATCGGAACTGCTGAATCAGTTACTGACAACTTGTCCATCCAAGTGGAGAATCATGCTCTTAGTCTGCATGAGCAGGTATTCCTTTTTCTTTCCTCAATCAACCAAGAGGTATCCTTGAGATGGTTAAGTGAAAAGGGTTGAGGTGATAGGAATTCCTTCGACAATTGATATGATATACTTTTGAGATTTACAGGATACTCTTGAGGATCTTGCTGATGCTTCAGGGACCGAGTTTGAGATTCCCGCTGGTTTTGATGAACAGGTATTTATATATGTCACAACTGATTGATTTGTCACTATTCCTGAAATATATAGGAGCTGTGCCATCCGATCCTTCCACTACCCTTTATCTATATTTACTTTACTAAAGTTCATGATACATACAGGTTGATATTGATGATTCCAACATGAGAACATATTGGTTGTGATCTAGAGCTGTTTCTTTGCGCAATCAGCAGGTTTGTTCCCAATGGAAACGCATATACACTGCTGGTTCAACTAACATTGGACTTCTAGGAATAGTTTATGTTTTATAGACAAACTATTTCTGGAAGCACTGTGAATTATATGATTGTAGACTTACAGTTTTCATACATGAGTTCCTGTACATCCCTTTGGGACCAGATTTGATTTATATATAATGTGAATAGTTCGGTTTTTTTTT