People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_04003 LG1 54353981 54355771 L-type lectin-domain containing receptor kinase IX.1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 54354043 synonymous_variant p.Pro21Pro
C/A 54354219 missense_variant p.Thr80Asn
G/T 54354272 missense_variant p.Ala98Ser
A/C 54354318 missense_variant p.Lys113Thr
T/A 54354339 missense_variant p.Leu120His
A/G 54354345 missense_variant p.Asp122Gly
A/T 54354483 intron_variant
T/C 54354484 intron_variant
A/G 54354522 synonymous_variant p.Thr136Thr
T/C 54354701 missense_variant p.Leu196Ser
G/T 54354703 missense_variant p.Val197Phe
T/G 54354704 missense_variant p.Val197Gly
T/C 54354815 missense_variant p.Leu234Pro
G/A 54354914 missense_variant p.Gly267Asp
A/T 54354921 missense_variant p.Arg269Ser
A/T 54354957 synonymous_variant p.Thr281Thr
A/G 54354958 missense_variant p.Asn282Asp
G/T 54354963 missense_variant p.Leu283Phe
G/A 54355523 intron_variant
T/C 54355593 intron_variant
G/A 54355625 intron_variant
G/T 54355628 intron_variant
G/A 54355641 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_04003.1
MRTIFILQILPLANSLSFDYPNFKNGDVKWEGDASVLKGAIQVTSNTIEQNNNYSVGRVTSFEQMVLWDTKSRKLADFSTKFSFVIFSEKRYYGDGMAFFLADPNLPLLKDIKEGGGLGLVDGDQVLNSTQHPIKYNSSTLNLSVSFTMYNDSKPVEEYISYKVDLRDHLPGRVVLGFAAATGRLYEVHTLRSWSFSSSLQSDDKIPPDSSLIDSKKGKKIGLWVGLGIGLGLALSLSGLVFTLLWKRNRDRKQILVFDDEFPKGTGPKSFSYNELASATNKFAESEKLGQGGFGAVYKGYLKDMKSYAAIKRISRDSKQGMKEYVTEVKALYKASDSGP*


CDS Sequence:
>Vu_04003.1
ATGAGAACAATTTTCATCCTTCAAATACTCCCTCTTGCAAACTCACTATCATTTGACTACCCCAACTTTAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTCTGTTCTGAAAGGAGCTATTCAAGTCACTTCCAACACCATAGAACAAAACAACAATTACAGTGTTGGGAGAGTCACGAGTTTTGAACAGATGGTCCTCTGGGATACGAAGTCTAGAAAGCTTGCTGATTTCAGTACTAAATTTTCCTTTGTTATCTTTTCAGAAAAGAGATACTATGGAGATGGAATGGCCTTCTTCCTTGCTGACCCTAATCTCCCACTTCTAAAGGATATTAAAGAAGGAGGTGGTCTTGGACTTGTGGATGGCGACCAAGTATTGAATTCAACTCAACACCCCATTAAGTACAATTCAAGTACTCTAAATTTGAGCGTTTCATTCACAATGTACAATGATAGTAAACCAGTTGAAGAATACATTTCATACAAGGTTGATTTGAGAGATCACTTACCGGGGAGGGTTGTTCTTGGTTTTGCTGCCGCAACAGGAAGATTGTATGAGGTGCATACATTGAGATCATGGTCATTTAGTTCAAGTCTACAAAGCGATGACAAAATCCCACCAGATTCCAGTCTTATTGATTCTAAAAAAGGAAAGAAAATAGGATTGTGGGTAGGGCTTGGAATTGGTCTTGGCTTGGCTTTGAGTTTGTCAGGGTTGGTTTTTACTTTATTGTGGAAGAGGAATAGAGATAGAAAACAAATTTTAGTTTTTGATGATGAATTCCCAAAGGGCACTGGGCCTAAGAGCTTCTCCTATAATGAGCTAGCAAGTGCTACAAACAAATTTGCTGAGTCTGAGAAGCTGGGGCAAGGTGGTTTTGGTGCTGTGTATAAAGGTTATTTGAAAGACATGAAGTCCTATGCTGCTATCAAGAGAATATCAAGAGATTCTAAACAGGGAATGAAGGAGTATGTGACAGAAGTGAAGGCCCTCTATAAGGCAAGTGATTCAGGTCCTTAA


Promoter Sequence:
>Vu_04003::LG1:54351981-54353981(+)
TTATTTAATATTCAGTAGTCATTAAATGAATAGTTATATACAATGGACTTTAAGAGTTTTTTTAGATAACATATATATGTCCACATTTTGTTACAAAACTAGTATAACTTTTTATTCAACAAATAAGTTATTAAGTAGTATAATATCATAAATAATTAGGGAACACACATTATTATAAGCTTCAATTTAGTGAACCAACAACAAAGAAAAGAATCTTGCAAAACCAATTTCAAAACAACCTCTTTTATAGAATTAAAAATACCGTAATATTAATGATTAATAATTATACTATTAAGTAGTATAATATCATAAATAATAGGGAACACACATTATTATAAACTTCAATTTAGTGAACCAACAACAAAGAAAAGAATCTTGCAAAACCAATTTCAAAACAACCTCTTTTATAGAATTAAAAATACCCTAATATTAATGATTAATAATTATACTATTAATAATTATAACTACTGTTTTTATAATTACTAACTATAATAATAATAATAATAATAATAATAATAATAATGATAATAATGACTTGCATGTGTTTCACAATGTCCAGTGAAGATGAATTAAGTGGTCATTCATACCCTTGAAATCCAATTTATAGAACCACAAAACTGGTTTCTATATCATTTTTGCTAAGTCTAGTCTCTCCAATGTGTTGGGCTTTACCTTCCCCTGTAAAGAGGCTCTTTCTTCCAGTACCCTATCAATTTTCTTCTTTCACCCTATCAAAATTTTTGAAAATTTTTATCTGAAATAAGGATGGGTGAGAGTGTCTTCCCAAAAAAGTGGATGAGTGTCTATCGAAAAATATTTCCAGAATTATTTAGTACGTTCTGGAAAATAAAATCCTAAATAATAGTGTGCAGGAGAAATTTAATGGGGCTGCTGGAAGAAATATCACTATAAAGATTATATCACTTTCCTTCAACCCATTAAATGATTGGTTTACGTGATCATGCTTTGAATAAAGCAAGTCCTTTGCCGTCAAAAAGTTTAAGAATGCAACAACAGTAATAGTTTTGTGTTGGAAAATCCAAGGAAGAAAAGCATTGGAGAAATCTTTATGAACGATTCATAAGAGATTCGAGAAAACACAAAAACATCTACCAATAAATCAGGATATATCTAAATAAGAAAACGTGACAAAACATTCTACTTAAGGTAATAGATATTCATACTTTTTTTTTTACATCACCGAACTTTTTTTTTACATAATATAAAAGTTTAGATTACATGAATTCCAATACTTTATTTCATTAGAGGAAAACATGTGTAAACATTTTTTAGATGAGAAAATGAAAAGAAACAATTTTTTTGTGAGATAAAATTATTTTATAAATAAATAAATTTAGAATTTGAATAATTTAATACGGCATAACCTCTGCAACTAAACATATTATCTCATGGATATATTGATTTCATTTCCTTTTCATATTTTTCTATCATTGTTCTGTGGAGAACTTTCCATCCATCGATCCTAATAATTGAAAGAGTTAAAATGGAGTGTTCTTCCTTTGATGGTCAAGACACCAAATTAACAAATTCCCACAATGCCGGCCAAATTTGATTCGTACACTAAGTTTCAAGAATGAAGACCATCCTACATTCTCAAAATCAACACAAAACAAAGGATAGAAATTATAAGATACAGAAATTTCGGCTTTCGTGATCCTGTATGGAATTTTCAGACTAAGTCACAACTCACGTCTATCACCATCGACAAAAAACATTGTACTCATCGCTAATCTATATGGCAAGGTAGGCCATGACAGAACTTGATGGAATTAAGACAACTATATAATCTAGAATAAGACTTTGGAATTCAATTAAATAAGCAAAAATACAATCATGCATAAAAACATAAAACTCAATATATATGTAAATCTTCCATACATGAAAGTGTTCCAACACAAAACATTGAACTAGCATTCCTCGCTTATAGATGGCTTGGTGGCATAAGACTGTTCATAATCCAATTCTTTTTTGTCATGCAA


Gene Sequence:
>Vu_04003(+)
ATGAGAACAATTTTCATCCTTCAAATACTCCCTCTTGCAAACTCACTATCATTTGACTACCCCAACTTTAAGAATGGTGATGTAAAATGGGAAGGGGATGCTTCTGTTCTGAAAGGAGCTATTCAAGTCACTTCCAACACCATAGAACAAAACAACAATTACAGTGTTGGGAGAGTCACGAGTTTTGAACAGATGGTCCTCTGGGATACGAAGTCTAGAAAGCTTGCTGATTTCAGTACTAAATTTTCCTTTGTTATCTTTTCAGAAAAGAGATACTATGGAGATGGAATGGCCTTCTTCCTTGCTGACCCTAATCTCCCACTTCTAAAGGATATTAAAGAAGGAGGTGGTCTTGGACTTGTGGATGGCGACCAAGTATTGAATTCAACTCAACACCCGTTTGTAGCAGTGGAGTTTGACACCTTCCACAACGAATTATGGGACCCTTCGGGTGAATTTCAACTCTATGAAGTCCAACATAACTAAGTCATGGTTGACAGATATTCAAATTTGGAATGTTTATAATTGCAGCATTAAGTACAATTCAAGTACTCTAAATTTGAGCGTTTCATTCACAATGTACAATGATAGTAAACCAGTTGAAGAATACATTTCATACAAGGTTGATTTGAGAGATCACTTACCGGGGAGGGTTGTTCTTGGTTTTGCTGCCGCAACAGGAAGATTGTATGAGGTGCATACATTGAGATCATGGTCATTTAGTTCAAGTCTACAAAGCGATGACAAAATCCCACCAGATTCCAGTCTTATTGATTCTAAAAAAGGAAAGAAAATAGGATTGTGGGTAGGGCTTGGAATTGGTCTTGGCTTGGCTTTGAGTTTGTCAGGGTTGGTTTTTACTTTATTGTGGAAGAGGAATAGAGATAGAAAACAAATTTTAGTTTTTGATGATGAATTCCCAAAGGGCACTGGGCCTAAGAGCTTCTCCTATAATGAGCTAGCAAGTGCTACAAACAAATTTGCTGAGTCTGAGAAGCTGGGGCAAGGTGGTTTTGGTGCTGTGTATAAAGGTTATTTGAAAGACATGAAGTCCTATGCTGCTATCAAGAGAATATCAAGAGATTCTAAACAGGGAATGAAGGAGTATGTGACAGAAGTGAAGGTAATAAGCCAACTGAGACATAGGAATTTAGTACAACTCATTGGTTGGTGTCATGAGAAGAATGACTTTGTCCTCGTATACGAGTTCATGCCAAATGGAAGCTTAGACTCCCACCTTTATGGAGTGAAAAGCTTCTTAACTTGGAGAGTGAGGTATAATATAGCTTTGGACTTGGCTTCAGCATTGCTTTACCTACAAGAAGAGTGGGAGCAGTGTGTGATTCACAGAGATATTAAATCAAGCAACATTATGTTGGATTCAAGTTTCAATGCTAAGCTTGGTGATTTTGGTTTGGCTAGGCTGGTGGACCATGAGAAAGGGTCACAAACCACACATATAGCAGGGACCAGGGGCTATATTGCACCTGAATATTTCAGTTCAGGAAAGGCTACTAAGGAATCTGATATTTACAGCTTTGGGGTTGTGTTGTTGGAGATAGCTTGTGGAAGAAAATGTGTTGAGCTAAAAGCTGAGGAGGGTGAAATAACTTTAGTTGAGTGGGTTTGGAAGCTCTATGGATTGGGGAGGTCACTTGAAGCAGTTGACCCAAAGTTACGTGGAGAATTTGATGAGAAACAAATGATCGGTTTAGTGGTTGTTGGCCTTTGGTGTGTTCATCCAGATTACTCATTCAGGCCCTCTATAAGGCAAGTGATTCAGGTCCTTAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1576298