Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03958 LG1 53766001 53767196 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of lateral root development, regulation of lignin biosynthetic process, regulation of anthocyanin biosynthetic process, regulation of shoot system development, regulation of lateral root development, floral organ development, regulation of lateral root development, regulation of shoot system development, floral organ development, regulation of seed growth, regulation of lignin biosynthetic process, floral organ development, regulation of secondary cell wall biogenesis, regulation of lignin biosynthetic process, regulation of seed growth, floral organ development, positive regulation of lateral root development, regulation of root development, xylem and phloem pattern formation, regulation of seed growth, lateral root formation, regulation of anthocyanin biosynthetic process, positive regulation of lateral root development, regulation of lignin biosynthetic process, nitrate import, regulation of root development, lateral root formation, regulation of lateral root development, lateral root formation, regulation of seed growth, response to nitrate starvation, nitrate import, response to nitrate starvation, regulation of seed growth
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   protein binding, protein binding, peptide receptor activity, transmembrane receptor protein tyrosine kinase activity, peptide binding, peptide binding, peptide binding, kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, peptide hormone binding, peptide binding, peptide hormone receptor binding, transmembrane receptor protein tyrosine kinase activity
SNP Position Effect Amino acid change
A/G 53766441 missense_variant p.Phe147Leu
A/T 53766462 missense_variant p.Ser140Thr
A/T 53766948 synonymous_variant p.Ser83Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03958.1
MVFSVLLLMLWSLQTCFAMISDAGSIEFDGGSQETDHETLFDPSFWYSFSIGYVCSASGIIFAYMWFCVPWAQLKKTKRKFMSSNVGRHDIRAIKANQVPQLLLYLLLLKKGNQEERQGQVYKAKLSNGSKVAVKRLYDSMLFETKFALEIGILHRFKHGNLILHFGISSEHVLLDKNFEPKLRNFRSAELMKESQKKLGKKDVYDFGVVLMELITGKKHVETEYRF*


CDS Sequence:
>Vu_03958.1
ATGGTTTTCAGCGTTCTTCTACTCATGTTGTGGTCATTGCAGACTTGCTTCGCCATGATCAGTGACGCAGGTAGCATTGAATTCGACGGAGGATCGCAAGAAACTGATCACGAAACATTGTTTGATCCATCATTTTGGTACAGTTTTAGCATTGGTTATGTCTGTTCAGCCAGTGGGATCATCTTTGCTTATATGTGGTTCTGTGTCCCTTGGGCGCAACTGAAGAAGACCAAGAGAAAGTTCATGTCTTCCAACGTTGGTAGGCATGATATACGTGCAATAAAGGCAAACCAAGTTCCCCAACTACTACTCTATCTGTTGTTGCTCAAGAAAGGAAACCAAGAGGAAAGACAGGGACAGGTGTACAAGGCCAAGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCCATGTTATTTGAAACAAAGTTTGCCTTAGAAATCGGGATTCTACACAGATTCAAACATGGAAACTTAATACTCCATTTTGGTATAAGCTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTACGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAGCCAGAAGAAGCTAGGGAAGAAGGATGTGTACGATTTTGGCGTTGTACTGATGGAGCTTATCACTGGAAAGAAGCACGTTGAAACTGAGTATAGATTTTAA


Promoter Sequence:
>Vu_03958::LG1:53767196-53769196(-)
CCTCTCCCACCCTTGAAACACCAAGACCAGCCTCAGACAAGTGCAGAAGTGTCTCAAACCCAGTTTTTTTGACAATGGTCACCCCTGTTAACCTGACTGACTACCTCAGTTGGACTTTCTGTACAAAATCTCATTTTCTCTCGGGTAATCGTTTACCAGGAAGTTGTAAACGATTACCAGAGCATTTATTCAACACCCTCAGTCATCCCTTGCACAGCTTGGTCCTCCAAGTGATGAGGGGTCACTCCACACTCCTTGGCCTCACATCACATCACCCCCCACTCAAATTGTCATTCAAATGAACTGGTTTTGACATTGGTCACCCATGTTACCCAGAATGACCACTCAAACACCAACATCTTACAAACAAGTCTGCAACTTAGGAGACACTAAACTTGACCACATTCTGAAATCCACAAACCCACAACTCATAATAACAATGGTATTGAAAAAATAAAATATGAGACCAATTCAAACAAAAACTCAAATTTTATATCATTGAACTAAATCCGATACATTACACTTTGTTTTCTTAATCTATTTACAATGATTACAATTATCATTTACTTTCCATTAATCAACTAAATACACATATCACTCATTTTTTATTCTAAGCACTACGGTTCCGGTGTATGGAGTCCTAAGTGCTCTTTCCTTGTAACGAACCCTAACATACGTCTTCAAAGGTTGTTCATTTCCGTCAATGTCAGTAGGGGATACAAAACCAGTGTTCACGGATGGTTCTGTACGAGGCACACTTTGTCCAACGTCATCTTTGTTTTGCCTTCTTGCCTTCTCTTCAGCCAATTGTGCCTCCAAACTTGCAACCCTCCTTTTAAGTTCTTCAATTAGAAATTCTTGGTCCTCTAAGGCACGCATAAAAGTTTCTCTGCGAAACGCGACCTTGGACCTTCACGAGAAGGGACCTTCGTCTCCAATGAAACAGAGAAAGGGGTATTTTCGGATTTTCAGTTAAAAGAAGGGTTACGAACTTCCATTTTGAAGGTTTTTATAAAATATTATTTTTAAAACAAACCAATGAAAGCACGACACGTGGCTTTGTAAAAAATGTGTTAAGAAAACGTTGTTGGAATATCGCGGTCCTTATCCCTATTCAATTTTTTTGTCCGGGTTTGTTTCTTGGATCAACGCATGTTGTTTTTACCTACTTGGATTTATTGTTACTTCCTTTACCACCTTACACCTTCTCATTCCTCTTTTATCCCGATAAAATGTTTAATTATGATTAAAATGTATTTACCTTCACCAACATCTACGCATTGCATCAATGTACTCCCACAAAAATCATATTTCTCTTGCTTCTTCTCCCTTTTAACTGTGCTATTGTAGTGGTCCAGTGGTGGTGCCAAGCAAAATACAAAGTTCAGTACCCTTAAACGGATATAGGGTATCCGTAGAACACTTAAACGGATCTCAATATCCGTGGACGGATTTCGAGATCCGTTAATTGAGGAAGAGAAAGAGGAGAATAGAGATGGAGAGAGAAAGTAAGAGTGTGGGGGTGGGGGTAAGAGAGTAAAAAACTAAGGTTTTAAGAAAAAGTTAAAAAAGGTAAAGGATATGAGGATGGGTGACTGACTAAATAATAGAGTAAAAAGTTAGGATTTTAAGAAAAAGTTAAAAAAGATAAAGGATAAAAGTAAAAATGATATTTTTGGAATAAAAACAAATTTGAGAGGTGTAGGGAGCTGTGTGACCATGGAGGGAGTAACTGTCCTTGGACTTTCGCTTAATTGGGCCGTATGAAGAGCCCAATCCATACCAGCAGGCCTTTTTGTGATCCGTTGAGGGCCCCTCTCTCTGCAGTTGCTCTTTTTCTATTTTGTAGCGTAAATTATGGGAGAGAGACTTTCATCCTTAAAAAGTCAACTTGATGGGAAGGAATCAAAGTATTGTAGCCTAACTTTGGGACAAAACCAGTAGAAATGAACCTTGTTTAAGCATAACCTTGGATCTATATGGAAGTTGACCTGAGAGCC


Gene Sequence:
>Vu_03958(-)
ATGGTTTTCAGCGTTCTTCTACTCATGTTGTGGTCATTGCAGACTTGCTTCGCCATGATCAGTGACGCAGGTAGCATTGAATTCGACGGAGGATCGCAAGAAACTGATCACGAAACATTGTTTGATCCATCATTTTGGTACAGTTTTAGCATTGGTTATGTCTGTTCAGCCAGTGGGATCATCTTTGCTTATATGTGGTTCTGTGTCCCTTGGGCGCAACTGAAGAAGACCAAGAGAAAGTTCATGTCTTCCAACGTTGGTAGGCATGATATACGTGCAATAAAGGCAAACCAAGTTCCCCAACTACTACTCTATCTGTTGTTGCTCAAGAAAGGAAACCAAGAGGTTCTCTTCTTTTCTAATTTTACCAACATTCATCAATTTCATATCACACTCTAAAATTCTTAGGAAATTATGTTCGTAAACCTTTTTTAGTTACATATACAGCTTTTCTACTTGCCCTCTTATATACTGAATCCATCAAGATGCATTTTATTACTGATATTTCAATTCAAAGGTACACTCAAGAAAAAGTTTGGTATAACATAGTTTGGTGCATACACAGGTTTCTAGAGTACTGGAGAAACTAAGATCGAGTATCAGCTTCATGGAACTGTGTAAAGCAACTGATTACTTCAACATGACCAATGTTATTGGGACAGGAAAGACAGGGACAGGTGTACAAGGCCAAGCTTTCTAATGGCTCAAAAGTGGCAGTGAAGAGACTCTATGATTCCATGTTATTTGAAACAAAGTTTGCCTTAGAAATCGGGATTCTACACAGATTCAAACATGGAAACTTAGTGGGTCTTCTTGGGTTTTGCACAGAGAGAAAGCACAGGATCCTTGTTTATGAATTCATGCCAAATGGTAAACTCTCTGATTGGTTACATCCTTTGCAAAATGAAGCTTTTCCATTGGATTGGCCAATAAGGCTTAAAATAGCACTTGGGTTGGCTAGAGGTTTATCCTTTCTCCATGATTGTTGCAATTGGAAGATACTCCATTTTGGTATAAGCTCGGAGCATGTTTTGCTTGATAAGAATTTTGAGCCCAAATTACGGAATTTCAGAAGTGCTGAACTCATGAAAGAAAGCCAGAAGAAGCTAGGGAAGAAGGATGTGTACGATTTTGGCGTTGTACTGATGGAGCTTATCACTGGAAAGAAGCACGTTGAAACTGAGTATAGATTTTAA