Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03936 LG1 53423653 53427648 PREDICTED: transcription factor bHLH112
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II, regulation of transcription by RNA polymerase II
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   RNA polymerase II cis-regulatory region sequence-specific DNA binding, protein dimerization activity, DNA-binding transcription factor activity, protein binding, RNA polymerase II cis-regulatory region sequence-specific DNA binding, DNA-binding transcription factor activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
G/A 53423721 3_prime_UTR_variant
T/A 53423906 3_prime_UTR_variant
C/G 53423909 3_prime_UTR_variant
G/A 53424075 3_prime_UTR_variant
T/C 53424285 intron_variant
T/C 53424310 intron_variant
T/A 53424352 intron_variant
G/C 53424383 intron_variant
C/A 53424480 intron_variant
G/C 53424485 intron_variant
T/G 53424490 intron_variant
T/A 53424495 intron_variant
T/G 53424878 intron_variant
G/T 53424900 intron_variant
C/G 53424949 intron_variant
C/T 53424952 intron_variant
T/C 53424990 intron_variant
T/G 53425016 intron_variant
G/A 53425051 intron_variant
T/A 53425053 intron_variant
G/T 53425074 intron_variant
A/C 53425111 intron_variant
G/C 53425316 missense_variant p.Pro408Ala
T/A,* 53425679 intron_variant
G/T 53425684 intron_variant
T/C 53425802 intron_variant
T/A 53425953 missense_variant p.Glu334Val
G/A 53425990 synonymous_variant p.Leu322Leu
A/G 53426083 intron_variant
G/C 53426133 missense_variant p.Thr311Ser
G/T 53426402 missense_variant p.Phe221Leu
T/C 53426469 missense_variant p.Asn199Ser
T/A 53426470 missense_variant p.Asn199Tyr
C/T 53426576 synonymous_variant p.Lys163Lys
A/G 53426833 intron_variant
A/T 53426959 intron_variant
C/T 53427008 intron_variant
C/T 53427187 missense_variant p.Gly67Asp
T/A 53427211 missense_variant p.Asn59Ile
T/A 53427220 missense_variant p.Glu56Val
A/T 53427312 synonymous_variant p.Ala25Ala
A/T 53427429 5_prime_UTR_variant
G/A 53427556 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03936.1
MAEEFQARICGENWWSSSIDSSPIASSPCSVAAHNDAGIYSTRQTDLKATKCCVEETNNLLSNTYLGFADAQKSPKSESARGSDSLLIDSTLQMMGFGLTSSASDNWNQHLLVRCNGRAESNFDSVLQEETGIDSSNSQIRRNWNPKSFSCAGGGHQQIDNFKPLNQEFSVDYQNLCSLTSNGLSSNRDFAIGSASYGNPSPLRSLYEPDPHPQLPQHSLFTNHSMSYSSKASYGTPCTELTPTWSKVTTFLKPTTIAKQHPIGLHFSNNTTFWSASADALNDIRAGTFASSQSQYQTPTFDQEKPNCPSTLLNKLNSEETLDSATMAKKDACEAALKRPRIETPSPLPTFKVRKEKLGDRVTALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVNVLSTSYMKNGAPIQPQQVCDDLKDSEGPHEDLKSRGLCLVPISSTFPVATETTSSAELWTPTFRGALLR*


CDS Sequence:
>Vu_03936.1
ATGGCTGAAGAGTTTCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTTCTATTGATTCATCACCGATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGCTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACGTACCTGGGTTTTGCTGATGCACAGAAGTCACCCAAGAGTGAATCAGCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTTACATCTTCAGCATCAGACAATTGGAATCAACATCTATTAGTTCGATGCAATGGAAGGGCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGAATTGGAACCCAAAGAGCTTCTCCTGTGCTGGTGGAGGACACCAACAAATTGATAATTTCAAGCCATTGAATCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGTTAACCAGCAATGGGTTATCATCAAATCGTGATTTTGCAATTGGATCAGCCTCATATGGTAACCCTTCACCGTTACGAAGCTTATATGAACCTGATCCTCATCCACAATTACCACAGCACTCACTTTTCACCAACCATTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTGAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAGTGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAAACGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGCTCAACAGTGAAGAAACTCTAGATTCGGCAACAATGGCGAAGAAAGATGCTTGTGAAGCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAACCGCAGCAGGTGTGTGATGATCTGAAAGACTCAGAAGGACCACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCACTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTGTTGAGGTAG


Promoter Sequence:
>Vu_03936::LG1:53427648-53429648(-)
TCATTATTCAATGGATCTCTTTATTTCTTTTATATATAACAATTAAGAGAAGCTTTTGCAACATATTAGAAAATATAACGAAACAAAAATATTTAGAAAATTTATGCATATAGAAAACAATGACCAAAGTGACAAGTGAGTTAATTATTTTCCACAATAATTACGAAAATGCTATCATATTTTCAATTTTTCCATTTTAAATGCACCAAAAAATATGAAACGGACTCGATAAAATTTCCCAAAAAAAAAAACTCAAATAGAAAATATGTATTTTCCAAATACAAAATAAACATGTTTGTAGTCTTGTTTTCTAGTTTGATTAATAGTAAATTGCACAGCCCCTAAATAACACAAATTAAGTTAACTAAAACAGTAGGGAAAATTTGAATAAAAACTCAGTTTATTTTTAAATGGATTGATAAAGAGCTTATTTCATAAAGTAAGTTATCTAAATGTGTAAATTAGTTCAAAACCTTCATTTCAAAATATGTTTTTATATTTTGATAATTAATTATATTCTGAGTTTGGTTTAAGATTCACTAACCCAGATGACGTCTTGGTGCTACCCTACTGTTCTTTGGCCAACTAATAGTTATTTGGAAAAATGACAACATTAGTACACACTAAGAACTAGGTTACTGGCCCAGCTAGTTGTACTAGTACTGGTGGTACTACCTCCTCTGCAATCATAACATTACCATGAAAATGGTCCTCAATTTTATCTCACTGTACAGATTTTTGGATTATGATAATTTGTGGGGAAAAAGAAACCGAGTACTTAAAAAGGTTAGTGTGTAAGGGGAAGGGATTCTTTTACTGTCCTTTTAAAAAGATATCAGTATTTTAAATCATTAATATTATACAAACTAACTAAGTTATACAAATACCTAATTTTCTATAAATATATAACTTTTATTATTCAATATGTTTTTTTTTTCAAACCAGAGGAAATGAAGATAAGTAGTTCCCTTAGTCTTATAGTTAGATTCCTTATTAATTAGTTATTCTTTTTGTAATTCCATTTTCCATTTTTGAATTCATAATTTGAGGAGAGAACTCAATATTTTAAGAACTTTTCTGAAAGATAATGTAAAAAAGCAGTTTACTTCTCTAAACAAATTATTAGGTTCATGATTATTTTATTTTAATCTAGGGTTTGAATATTTTATTAGGTTCATGACATGCCTGGACTGCAAATAAAATCTCACACCATGAATATTATTATACCGTCCACATTCTTTCATATACAAACGTAAAAAAAACACATTTCTTTTTTTTTTTTTATACAGTAAATAATCTGTTTTAATAGAATATATTTAATTTTTGTTTAATAGTACGATAGAATTGAAATGAGTCACCTGTTTGAGTAATTAAAATACACTCAAAGAACGCAATAAAATTACATATTTAGTTCAACTAAGAGCAGTTGTGTGCTCTTAAATGTTGTGAATAGCTCTCAAAATTATAGTTGCTAATTTTGATAAATATTTTAAGATAACCTTTCTTTCTCAATCCTTTTTGCTTAAATAAGAACTTAACTTCTACAAGACAATACTTAATTATACTTAACATTTAAAAAATAAATATATAATAATTATTTATGTTAATTTTTATATAAAAAATCATGTTGGTAAAATAGTTTCATGAATTTATTTAACATAAAAGTTAAAAAAATAATGAAATTCAATATATATATATATATATATATATATATATATATATATAATTCATTACTTAAATTTTAATAATTTAACAAAGTCACTACAAAACGAAAACAATTTCAAGGTTCGAATAAGAAAATGATAAATAAATATGTTTTTGAATATCGTATGAATTTGTTCTGATTTTGATATAGAATCCTCCACTTACATATCAATTTCTTAAATACAAAATAGTAAAATATTTTACTGATAAAAATACAAAAACAACAAAACCAATTATGAAAGAAACAAATTCACAGCCAAGTACATACATATATATGTATTTGTTTTTAAGAAAAG


Gene Sequence:
>Vu_03936(-)
AAGAATTAGAATATGATTCAAAATTCTCTCTCATTTGTCCAATCATCCCGTTGTAATGTCAACCGGATTCCGGTAATCACCATTGTTCGTACCCTTCTAACCGTTTCATATATAAAATCACTTAACATCCAACCCTCTCTTTTGCAAATAAACCTATATTTCTGAGTCATATTTTTTATATTCAGCACGTAACTCAAGAAGCTAGCATAGCTCACAGGTTCAAACAAGTCTGCAATTTGACAAGAAGAAATAAAGGCTTGCCATGGCTGAAGAGTTTCAAGCTAGAATTTGTGGTGAAAACTGGTGGAGTAGTTCTATTGATTCATCACCGATTGCTTCTTCTCCTTGTTCCGTGGCAGCTCATAATGATGCAGGAATCTACAGCACTCGTCAAACAGATTTGAAGGCAACCAAGTGCTGTGTTGAAGAGACTAACAATTTGCTTTCCAACACGTACCTGGGTTTTGCTGATGCACAGAAGTCACCCAAGAGTGAATCAGCCAGAGGAAGTGACAGCTTGTTGATCGATTCCACCTTACAGATGATGGGTTTTGGCCTTACATCTTCAGCATCAGACAATTGGAATCAACATCTATTAGTGTAAGACATCGCCAAAAGTAATATGTATATGATCATATATGCTTTACTTTTGCTAACATTTTCTTCTGAGAGAGAATTTTAATTAAATTTTTTATGTAATATATGTGTGGGTGGAAGGTTTGTGGTATATGGTCCAGCACTTCCACTAGGGTTGAAAAAGGTTTATTTCTCTTAACTTTTTCTGGTTGATTTCATTTGAAAAAGGGAACTTGATCTTATCAAAGCATATATAGCTTATACTATAGCTCTCAATTGTTTCTTTAGCTATTGGATTCTCCTAATCATGACCATATATTTTATCTTCTTTTTTTTTATCCCATAGTCGATGCAATGGAAGGGCAGAGAGCAATTTTGATTCCGTGCTTCAGGAAGAAACGGGAATAGATTCTTCTAATTCACAAATCCGCAGGAATTGGAACCCAAAGAGCTTCTCCTGTGCTGGTGGAGGACACCAACAAATTGATAATTTCAAGCCATTGAATCAAGAATTTTCAGTAGATTACCAGAATCTATGTTCGTTAACCAGCAATGGGTTATCATCAAATCGTGATTTTGCAATTGGATCAGCCTCATATGGTAACCCTTCACCGTTACGAAGCTTATATGAACCTGATCCTCATCCACAATTACCACAGCACTCACTTTTCACCAACCATTCAATGTCCTATTCATCAAAAGCAAGTTATGGGACACCCTGCACTGAACTAACGCCAACATGGTCTAAAGTCACTACTTTTCTGAAGCCCACAACTATAGCAAAGCAACACCCTATTGGACTTCACTTTTCTAACAACACCACTTTCTGGAGTGCTTCCGCCGACGCACTTAACGACATAAGAGCAGGTACCTTTGCTTCATCACAATCACAATATCAAACGCCAACTTTCGATCAAGAGAAACCCAATTGCCCAAGTACTCTATTAAACAAGGTACGTTTATGTTTCAGTTAATACAGTTTTTCATGTTTATATATCCATATCTCTAGCTAGCTAGGGTTTTCTGCTGAGCACTGTAATTGATAAATATATACTGAAGTGCAGCTCAACAGTGAAGAAACTCTAGATTCGGCAACAATGGCGAAGAAAGATGCTTGTGAAGCAGCATTAAAGAGGCCAAGGATTGAAACTCCGTCCCCATTACCGACTTTTAAGGTATTGTACTGTTTTTGTTTACTGCAATTCAACTTTCTTTCTTTTTTCACTATGCAACATTGTTCAACCTTTATAATAATTTCACTTTAGATTTTAATCAACTTGACATGTATGGACAGGTTCGGAAAGAGAAGCTAGGGGACCGGGTCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGAAAGGTGAACATTTTCGGATATGTCTCTTTCACTTTTATTTTTTTTTTAATTTACCCTGGAGCTACGACTACGATAGAATCGAGACCTTTACTTTCTTAGAGCACATTGAATGGTAAAAATGTAAAAACTCAGATATTTTATTCTTGTTCATCTCAACAGACCGACACCGCATCCGTTCTTCACGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAATGTATGTTTCCATTCATCCAACATTGTTTTGAAGAAAACCCTAATAATTGAGTACCATGTAGAAATCTTCAATAAGAAAATGGTTTTATTGTAAGACCCTTTTTATGCTTTGTTTTAAATATTATCTTCACATGAATTACAGGTTTTGAGTACCTCATATATGAAAAACGGAGCTCCCATCCAACCGCAGCAGGTACTAAAAACATGATTATAGTATATATATATATATTCCTTTACCAAAAATGTCTTCTAGCAATAGTAGGTAATATACTAATATTAGTATTGCATTTTTTATATCATTCTTTAATGAAAACTATAGATTGTAATATAGGAATCCTAAACTATTGGTTCTTTCACGTTATTCAATGAAAACAAGGAATTTGTAATAATTTTAAATTATGTGACATTATTTTAGTTCTAAATAACTGTAAAACATGTAACTAATAATTTTAAATGATGTGACATTACTTTAGTTAGTTGAGAGTCAAATTATATCTAAATAACTGCAATTACACTGTGATTCACATTCACCAAACTTCGGCGACCCAGTCCTCGCCAACGGCTTCATCCTCGCCACCTCTTCATCTTGATCCTCGAAGTTCACTGGTCAGGCAGAGTCCGGACCCTACTCCGACACCACTTTCTCCTACGTCAACAACAATTACAATGGCCATCTCCAGTGCAACAATGTCGGTGGTGTTGTTTTTGCCTCTTTGGTGCAAGTGGAGACCTACCATGGAAAATAGCTACTAGTTCTCCTATGTCATGAGCTTGGTTTCAACGAATTTTTGACCCATTGGAAACGGACTCGTCATCTTAGAGTTCGTCAGATGAGTCTCCAATTGTGCGTCATTGGAGTGTTTAGTTGGGGATTAGAGGATATGTTGGTGGTGGCAAGAGGAACTTTCGATGATTCCACCTCTGTGGCTAAGACATTGGTGGGTGATGACCACCTCGTCTCTTCAAATCTTCCTAGATGAGGTTTAATTGATAATTAAAACAATGTCACATGGTTTAAATTTATTACATATAACATGTATTTATTACATTAATCTAGAAGGACACCAAAACCTTTGTTTAGAGGTACCTATAGAAATGCCCGTAATATCAAGTTTTACTGTCCTCACATGTTGACTATAATGTTTTTTTTAAGAATTAGTCTGAGATTAGTTTTTGTAGTGAAAGTGGTTTTGAAACATTTATTATATGTTTGTTGAAAGGTGTGTGATGATCTGAAAGACTCAGAAGGACCACATGAAGATTTAAAAAGTCGAGGTCTGTGTCTGGTACCGATTTCAAGCACATTTCCAGTTGCAACAGAAACCACTAGCAGTGCTGAATTGTGGACGCCTACATTCAGGGGCGCTCTGTTGAGGTAGGGAAGATAAAGCCAAAGATACTCGGCCAGTGGAGAATCGATGACGTATTGTTAACTATTTGCATGTGTAAGATGATGAAGCAGATGTGAAGGCACAGTGATGAAGAGAAAAGCTGAAGAAAACAAAGGATGAAAAGAAGGAAAAGTGAGAAAAGAAACAAACGAAGTGACCCTTCAAAGCTCACCACCAGGGAAGCTGGGCCAGCCACAACCACAATGATGTGCGCTTGCAAATCATTAGTGACCACTGGAAGAGAAATATATTTAACTTGCATACATATAGTTTATCAACTGGCTGTGCTACAAGATTAATATATATGTGACCCCATATCTTAGTTAATTTGTGATGGGTGAGAGTAGGATCATATACTAAATTCACCCACATTTCACATCACAGTAGCTGATTTGCTGCTGCTTCTTTCACACTCTCTCGGCTAATTTAATGTCTTTTAATTTGTTCC