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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03823 LG1 51753438 51754784 hypothetical protein LR48
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, protein phosphorylation, cell surface receptor signaling pathway
Cellular Component   is active in   plasma membrane
Cellular Component   located in   plasma membrane
Molecular Function   enables   kinase activity
SNP Position Effect Amino acid change
G/A 51753440 start_lost p.Met1?
C/T 51753473 synonymous_variant p.Phe12Phe
G/A 51753482 synonymous_variant p.Lys15Lys
G/T 51753499 missense_variant p.Arg21Ile
A/G 51753516 missense_variant p.Lys27Glu
A/T 51753530 missense_variant p.Arg31Ser
C/T 51753581 synonymous_variant p.Ile48Ile
G/A 51753590 synonymous_variant p.Glu51Glu
A/G 51753649 missense_variant p.Asp71Gly
T/C 51753674 synonymous_variant p.Asp79Asp
C/G 51753699 missense_variant p.Arg88Gly
C/T 51753718 missense_variant p.Thr94Ile
C/G 51753756 missense_variant p.Leu107Val
C/G 51753761 missense_variant p.Cys108Trp
C/T,A 51753856 missense_variant p.Pro140His
G/T 51753861 missense_variant p.Asp142Tyr
A/G 51753862 missense_variant p.Asp142Gly
C/A 51753897 missense_variant p.Pro154Thr
C/T 51753911 synonymous_variant p.His158His
G/A 51753942 missense_variant p.Glu169Lys
C/T 51753952 missense_variant p.Ser172Leu
A/G 51754003 downstream_gene_variant
C/T 51754054 downstream_gene_variant
A/T 51754104 missense_variant p.Glu185Val
T/C 51754137 missense_variant p.Ile196Thr
C/T 51754145 missense_variant p.Arg199Cys
G/T 51754170 missense_variant p.Cys207Phe
A/T 51754183 missense_variant p.Gln211His
T/A 51754190 missense_variant p.Ser214Thr
C/G,A 51754196 missense_variant p.Gln216Lys
A/G 51754232 downstream_gene_variant
A/T 51754273 downstream_gene_variant
A/T 51754274 downstream_gene_variant
T/C 51754318 downstream_gene_variant
A/G 51754328 downstream_gene_variant
G/T 51754330 downstream_gene_variant
G/A 51754371 synonymous_variant p.Arg226Arg
C/A 51754380 missense_variant p.Ser229Arg
G/C 51754406 missense_variant p.Arg238Pro
G/A 51754432 missense_variant p.Ala247Thr
G/A 51754444 missense_variant p.Gly251Arg
C/T 51754454 missense_variant p.Ala254Val
T/C 51754500 splice_donor_variant&intron_variant
T/G,C 51754506 splice_region_variant&intron_variant
G/A,* 51754518 downstream_gene_variant
G/A 51754579 splice_acceptor_variant&intron_variant
G/A 51754591 missense_variant p.Glu273Lys
G/A 51754593 synonymous_variant p.Glu273Glu
A/T 51754601 missense_variant p.Lys276Met
C/T 51754604 missense_variant p.Ala277Val
A/G 51754606 missense_variant p.Thr278Ala
G/A 51754610 missense_variant p.Arg279Lys
G/C 51754619 missense_variant p.Arg282Thr
G/T 51754622 missense_variant p.Arg283Met
G/A 51754625 missense_variant p.Arg284Gln
G/A 51754649 missense_variant p.Arg292Gln
G/T 51754657 missense_variant p.Gly295Trp
C/T 51754732 stop_gained p.Arg320*
G/A 51754733 missense_variant p.Arg320Gln
C/T 51754774 stop_gained p.Arg334*
C/T 51754779 synonymous_variant p.Ser335Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03823.1
MMFVLAITGVIFYKKHNQAKRKANEAKINKRKEDLSVKASALSSRIFIGREIRKATNDFSRENLIGIGGFDEVFKGTFDDGTVFSIKRAKLGSTEGIDQMRNEVRILCQVNHRSLVKLLGCCLELEHPLLIYEYVSNGTPFDYLHSHSCGTREPLKLHQRLKIAHQTVEGISYQHQSFAEVVTTRSSNGVLHHLAAYSDAPMLTRAFATKANAPPCNTLKDFTIAVTATEHFTQTRSLPVSTNRRRRRDGDGEASEEQALEGNDNGRVFDHDDGGVEGDKEGEEAERKKASWAKIRENHTTKKAAGLRLRASRMATTGVPPRSRRNKVDGIRAMAIR*


CDS Sequence:
>Vu_03823.1
ATGATGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAATGAGGCTAAAATTAATAAGAGAAAAGAAGACTTAAGTGTGAAAGCTAGTGCTTTATCATCAAGAATCTTCATCGGTAGAGAGATAAGAAAGGCAACGAACGATTTCTCCCGAGAAAATTTGATTGGAATTGGTGGATTCGATGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTTCCATCAAGCGTGCGAAGCTTGGAAGCACCGAAGGCATTGATCAGATGCGAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAAACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTAATATACGAGTACGTTTCAAATGGGACCCCTTTTGATTACCTTCATAGCCATTCTTGTGGCACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGTCGAAGGGATTTCATATCAACATCAAAGCTTTGCAGAAGTTGTGACCACAAGGAGTAGTAATGGGGTACTACATCACCTTGCGGCATATTCTGACGCGCCTATGCTCACAAGAGCCTTTGCCACCAAAGCCAATGCGCCTCCGTGCAACACCTTGAAGGACTTCACCATAGCAGTTACGGCAACGGAGCATTTCACCCAGACAAGGTCGTTGCCGGTGTCGACCAACAGGAGGAGGCGCCGCGACGGAGACGGGGAGGCAAGCGAAGAGCAGGCGCTCGAGGGCAACGACAATGGAAGGGTTTTCGACCACGACGACGGAGGAGTTGAAGGCGACAAGGAGGGAGAGGAGGCGGAGAGGAAGAAGGCGAGCTGGGCGAAGATAAGGGAGAACCACACGACAAAGAAGGCGGCGGGCTTAAGGCTGAGGGCGTCGAGGATGGCGACGACGGGGGTGCCACCGAGGTCGAGGAGGAATAAGGTGGATGGAATTAGGGCGATGGCGATCCGGTAG


Promoter Sequence:
>Vu_03823::LG1:51751438-51753438(+)
ACTTAACTTTCAAGGATTTCACGTGAAAAATGTCTCCAGATATTTTTGTATTTGAATTTAAAACAACGTTTTTGCATCTGTTATAGTGCGACGTAAATAAACTTTCAAAATTTACGTTAGATATTAGACGTAAATGTTCTTATAATATTTATGCACATTTTTTTTTTGCGATTTTAGTGTTCTCGTTCTTTTTTCTAGTAGAATTTTTGGTAAGCTCTTTTTGTTTTCCATTTTTAGTCTCTACGAATGGTTTTATGTGGGAGAGACTTTTGTTAAATTGGATTGTGGTTTAGCATTTTTTTTATTGAAGTCAGTGGTTTGAATCTTCATTTTGTTTTTTAATTTAATGTGATTGTTTAAGGTATATAGATTAACAAGTAACCTTCCTCCCGAGCTTTTATATATATATATATATATATATATATATATATAGTTTTAGATTTTTTTAGCTCATTTTTAGATTATATTAAACATATTTATTGAAATTTTAGCTGAGAGTTATATTGTATTGAAAACAAGTTGTATTTCATCAACTAAAACCAAATGAAATTTTAAAAAAATAAATATTCAAAATTTAGATTGAATCTAGCCAAGTTTAACGTAAATTTAAGTCGAAGTTTAGATCTGACGTAAATTTTCGTCATTTATATTTATGTCTGAGTGTTATGTAATATATACAGATAAAAATGTTGTTAATAAAAGGTTTTTTGGTGATAGTTTACAAATTATCACACGGTTGTCTGGTAGCATATAGGTATATAAAGTTTAATAAGGGTAGTGTCTATGTTTATGTTTTGCTTTTATGCTGTGTTGACATGAGAAACATAACTACAAAAAAAGATTGGATTTACCATGGTCAAAATCCGTTGGTAATGTCCAAAAACCGTTGATAAATAATAATTATCAACAGATTATTTTATGGTCAAAAATTCATCAATAAATATATAGTTGAAAAACATTGTCAATGGATATAGATTGTCGGTAATATCGAAGGTTAGAAGTCTAGGTAAGTTGTATTAGATATTTAAATATAAATGGAAAGTGAAGTTGAATAAAAGTAAAAATGTTGAGTGAAGTATAAAAAAACAAAATTTATAAATATTGAGTCTTAAAATTTTATGTTGAAAGTAGCTTAAGGTGGAAAAACTTAGGAAAAAGTTTTTTTTTGCAACTTTTTGATGTCCAAAAATAATAATCATGAACAAATTTTTGATGGCCAAAAATTCGTCAAATGTGTAGTTGAAAACATTATCAATGGATATAGACCGTCGGTAACACCGAAGGTCAGAAGTCTAGGTAAGTTGAATTAGATATTTAAATATAAATTGAAAGTGAATTTGAATAAAAGTAAAAAAGTTGAATGAAGTATAAAAAAACAAAATTTATAAATGTTAAGTTTTAAAATCTTATATTGGAAGTAGCGTAAGGTGGAAAAACTTAGAAAAAAAAATTTTAACAACTTTTTTACAACCGCTTACGTGGTCCGTTTCAAATATACACACCAATAAAATAGTGATACATAGTCTATTGTCAAAAAACTGTTAACATATCACTAGTGCAATAAAGGGAAACGACAACGGTTATTTTTATCCATCTGCACCGATTCTGCAGCCAAGGCATATACAGGCGAGGTAAAAAATCTATCACTTTTTACCTCGAGTCTGAACCGAGGCAAAAAAAATGTATGCTTTTGTCTCGGTCCAAATGCAACCGAGGCAATAGAGGTTTTTACCATGCGACAAAGGGGGTCTTATGTGTGTATCAGTCTCTTTAGTTTTCTTCTGCTCAACATTTAACAGTTCTGATCACGTGCGATACAATTTTGCAAGATATAACAATAAATCGTTTATTAGTGGGAAATTTTCTATTACTTGATGGTGAGATGATACACACTAACTAACAATAAGATAAATCATAAAAATGAAGATAAAAGCACGAAAATTTATAATTTTTTTGTTATGAACTCTTGTTTCGGGCAGTGGTTGTTTCCATAGGAGGAA


Gene Sequence:
>Vu_03823(+)
ATGATGTTTGTTCTAGCAATCACAGGAGTGATCTTCTACAAGAAGCATAACCAAGCAAAAAGAAAAGCAAATGAGGCTAAAATTAATAAGAGAAAAGAAGACTTAAGTGTGAAAGCTAGTGCTTTATCATCAAGAATCTTCATCGGTAGAGAGATAAGAAAGGCAACGAACGATTTCTCCCGAGAAAATTTGATTGGAATTGGTGGATTCGATGAAGTGTTCAAGGGGACATTCGATGATGGAACCGTGTTTTCCATCAAGCGTGCGAAGCTTGGAAGCACCGAAGGCATTGATCAGATGCGAAACGAGGTTCGAATTCTGTGCCAAGTAAACCACAGAAGCTTGGTGAAACTCCTTGGTTGTTGCTTGGAACTTGAACACCCTTTGCTAATATACGAGTACGTTTCAAATGGGACCCCTTTTGATTACCTTCATAGCCATTCTTGTGGCACAAGGGAACCCCTGAAATTGCACCAAAGACTCAAAATTGCACACCAAACAGTCGAAGGGATTTCATATCAACATCAAAGTAAATCAGAACACAAAGAGAAATACAAATAAGGCTAGACCTTATTTGTGACCACCTTAACGTGACATTTGCCTCATCAAACTTTTTCTGGCAAAGGCACCCTCTAAACAGGCTTTGCAGAAGTTGTGACCACAAGGAGTAGTAATGGGGTACTACATCACCTTGCGGCATATTCTGACGCGCCTATGCTCACAAGAGCCTTTGCCACCAAAGCCAATGCGCCTCCGTGCAACACCTTGAAGGACTTCACCATGTGCAAAATTAAACCATAAAGTTCCCATCTTTGCTAAAGACAAACAAAAAACCAAAACAAAGAGCAGCCAAAATTAAACCATAACAAAGAGAAAGCTTTTAGAATGTCAGGGAAGGAATGTGGATCTGGGTCACTTGGTAGAGCAGTTACGGCAACGGAGCATTTCACCCAGACAAGGTCGTTGCCGGTGTCGACCAACAGGAGGAGGCGCCGCGACGGAGACGGGGAGGCAAGCGAAGAGCAGGCGCTCGAGGGCAACGACAATGGAAGGGTTTTCGAGTAGGAGTCACTTGAACTAGAGAGAGGACTAGACGCCGAGGAGAAAGGTGGTGTGGGCGCAAAGGAAAGAGGCGATGGCAGCCACGACGACGGAGGAGTTGAAGGCGACAAGGAGGGAGAGGAGGCGGAGAGGAAGAAGGCGAGCTGGGCGAAGATAAGGGAGAACCACACGACAAAGAAGGCGGCGGGCTTAAGGCTGAGGGCGTCGAGGATGGCGACGACGGGGGTGCCACCGAGGTCGAGGAGGAATAAGGTGGATGGAATTAGGGCGATGGCGATCCGGTAG

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