Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03816 LG1 51687061 51687882 PREDICTED: dof zinc finger protein DOF2.2-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
SNP Position Effect Amino acid change
G/A 51687127 synonymous_variant p.Gly252Gly
A/G 51687285 missense_variant p.Ser200Pro
A/T 51687382 synonymous_variant p.Ala167Ala
A/G 51687427 synonymous_variant p.Val152Val
T/C 51687490 synonymous_variant p.Leu131Leu
C/A 51687516 missense_variant p.Gly123Cys
A/C 51687517 synonymous_variant p.Gly122Gly
C/T 51687666 missense_variant p.Gly73Ser
A/G 51687708 missense_variant p.Tyr59His
G/T 51687798 missense_variant p.Pro29Thr
T/C 51687862 synonymous_variant p.Arg7Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03816.1
MEHHQAREENTKIHLAVPAAPPKPQHKCPRCNSTNTKFCYFNNYSLSQPRHFCKTCKRYWTQGGTFRNIPVGGASRKAKRGKTDSSPSNSLTQPHSDLVNPSPSLTMAHSTTPYYQLGGGGGGGGGGGGYLSSLATLHSLTPSQPFNHYLNVAGSSSILPLLSGFNAAAAAASFPPRFHHVGIRERMESLYPAPQRLLPSNVSGGSAAAAAQSLISDVSSTNLTAGSDVSFWSATINATSISGNSDRNNVKGGSSSSLIPNHWLHPPGYRPPQ*


CDS Sequence:
>Vu_03816.1
ATGGAACATCATCAAGCCAGAGAAGAAAATACAAAAATTCATCTTGCAGTTCCTGCTGCACCGCCAAAACCGCAGCACAAATGTCCTCGCTGCAATTCCACCAACACCAAATTCTGCTACTTCAACAACTATAGTCTCTCGCAGCCTCGCCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCAGGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGCTTCCCGTAAGGCCAAACGTGGCAAAACAGATTCTTCACCCTCCAATTCACTCACACAGCCACACTCAGATTTGGTGAACCCTTCTCCGTCACTCACCATGGCTCACTCAACTACCCCTTACTATCAACTTGGCGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGGTATTTATCTTCTCTGGCAACGCTTCATTCTCTGACCCCATCGCAGCCTTTCAATCACTACCTGAACGTTGCGGGCTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTGCTGCTGCTTCTTTTCCTCCTCGGTTCCATCACGTGGGAATCAGAGAGAGGATGGAATCTCTCTATCCTGCACCACAACGTTTGCTTCCATCAAACGTGTCTGGTGGCAGTGCTGCTGCAGCAGCACAAAGCTTGATTAGTGATGTTTCGAGTACAAACCTTACGGCTGGTTCTGATGTCTCATTTTGGAGTGCTACTATCAACGCCACTTCCATCAGTGGAAACTCTGATCGCAACAATGTCAAAGGCGGTTCTTCTTCCTCTTTGATCCCAAATCATTGGCTTCATCCTCCAGGGTACCGTCCTCCTCAATAA


Promoter Sequence:
>Vu_03816::LG1:51687882-51689882(-)
CATAATACTATATTTAATTCATAATAAAAAGAAATAAACATAAATATTATTAAAAAAATATTTTTTAATCAAATCTTCAAATTGATAGATTTTTATTTTATTTTTTTAAAACTTAATTAGTAATTTGATTTTTTTATATTTAGATTTATGATTTATTTTTATTCTTATACTTCTCTAACTTAATTGACTTTATATTTTTTAAAATAATAATGTCATTGAAAAGTAATTAAGTGTAACATATTAGGTTTATTTTCACTTTTTTTAGCTTTTTCTTCTCCTTCTTGTCCCTCTTTTCTCTCTTATCACTCTTCTCCTCCACACTCTTCAATTCCTCCGCAATGGCTAGACTTTCATCCGAGTGTGCGAGTCCGTCATAATGGGCCACATCAAAGTTTGAAACCTATCATAATTTCATAGTCTCTACACCATACAAAAATATAAATAACAACGACTAGACAATACTTTTTCACAAGAGAACTGCTTAAAACTTTGACAAATTGTAAAAATATCATTGGGAGAGAAAAAAAAATCGAATTTGAAAACTCTCGGTGAAACGAAGATAAGATTTTAAGAGTAATGTGACACCCAACAAAGTGATATTACAAAAATACTACATGGAGCATACACATTAATTCTTCTAGATTGAATCTCCTTATCCTAAGAAATTTTACTAAGATATTACAAAAATACTACATAAAGCATACACGTTAATTCTTCTAGCTTGGCAAGAAGAATGAAATTCTCGCAAATCTAATATTTTCACTTAGAGGGATTACTATAAGAACAAAAGAAATTCCTAGTCACTTTCTGAGAACCAAATTTTGACTATCATATCCAAATCCAGAGTGTTTTACAAAAGAGAATTTCTCGCAAAACATTATAAACAAGAATGAGAGATATCACGCATTAAATTTAAGCATGAACAACTTTAGAAGAAAGAATATTTTTGAAGATTATAGGATCATACAATTCAGTAGCACCAAGCCAACCAAAAAAAAAAGATTTATAAATAGCAAACTTATCATATTTGGTTGCTATAACATTAATTCAAAGTTAGTAATTTTATAAATTATTATACGTAGAAGTTGATATATTTGAATTGTATCTTGAATTTAAGGTAAAATTAATAATGAATATTATAATACGATAATATACGGTAAATTTGTTTAAAATGTATTGTTTAATTATTAAATAGAATGTTTGAAATTGGAAAAAAAAAGTTGAATAGGAGTCAGAGGTGATAGAGAAGGATCAATCGTGTGAAATAAGTTTCAGGTGGTTTGTGTTTCCCCTTTGTTTCCAAGGTTTGTGCTGAGAAACCTCAACAGCTTTTGAGTGCATTATTTCAATTCCATTTTGATGTGATCTTAGTTGGCCAGAGAAGGGACTCCACAATCTACCCCATTTATTCTGCTTATACTTTTATCATAATCTGACACCTCTCTCACCAAATCCTCAATCCAACTTCCCTTTTCAAACACTCAGATTGGGACCCTTCATTTTTCCACTTTCTAAACATTTCACATCAATCCCCTTCACCCAATTTTGCATAAACACCATTTTTTCCCTTCTCTCTTCTTTTCTCCTTTCGTATTTCAATTACACTTCACTCCTCCCAAATTTATTAAACATAGATCCCCAGAACCCACTCAGATTTAACAAGATCCTCCTCAATTAATTCCAACACCCAGTTTCAGATACCTCATAACATTCATATTAAATTTGAGAGATTTGCTTCCTTCTTTTTTGGCTTCGTTCTTGGGAGGCAGTAAAAACCATGCACCATCATGTAATCATCGCCTTGCCCTTTTGACAACTATACACCAATCGAAAAACACATTCGACACGTGGCGCCATTACACAGCCCCCGATATCTGAAACACCACACGCTTTTATTTCGAATCCATGCCACCAACCATTTCATAGTACACACAAATATAAATACAACCAAAATTATCCCCATCCACACGCAGAGAGAACAAAGCACGCTACGCTAAGAT


Gene Sequence:
>Vu_03816(-)
ATGGAACATCATCAAGCCAGAGAAGAAAATACAAAAATTCATCTTGCAGTTCCTGCTGCACCGCCAAAACCGCAGCACAAATGTCCTCGCTGCAATTCCACCAACACCAAATTCTGCTACTTCAACAACTATAGTCTCTCGCAGCCTCGCCACTTCTGCAAAACGTGTAAAAGGTACTGGACGCAGGGTGGAACCTTCAGGAACATACCCGTTGGTGGTGCTTCCCGTAAGGCCAAACGTGGCAAAACAGATTCTTCACCCTCCAATTCACTCACACAGCCACACTCAGATTTGGTGAACCCTTCTCCGTCACTCACCATGGCTCACTCAACTACCCCTTACTATCAACTTGGCGGTGGTGGTGGTGGTGGAGGAGGAGGAGGAGGGTATTTATCTTCTCTGGCAACGCTTCATTCTCTGACCCCATCGCAGCCTTTCAATCACTACCTGAACGTTGCGGGCTCTTCTTCTATTTTGCCTCTTCTGTCTGGCTTCAACGCTGCTGCTGCTGCTGCTTCTTTTCCTCCTCGGTTCCATCACGTGGGAATCAGAGAGAGGATGGAATCTCTCTATCCTGCACCACAACGTTTGCTTCCATCAAACGTGTCTGGTGGCAGTGCTGCTGCAGCAGCACAAAGCTTGATTAGTGATGTTTCGAGTACAAACCTTACGGCTGGTTCTGATGTCTCATTTTGGAGTGCTACTATCAACGCCACTTCCATCAGTGGAAACTCTGATCGCAACAATGTCAAAGGCGGTTCTTCTTCCTCTTTGATCCCAAATCATTGGCTTCATCCTCCAGGGTACCGTCCTCCTCAATAA