Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03815	LG1	51665962	51666912	PREDICTED: dof zinc finger protein DOF1.4-like	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus, nucleus
Molecular Function	enables	DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/C	51666309	synonymous_variant	p.Phe116Phe
T/A	51666501	synonymous_variant	p.Ser180Ser
T/A	51666504	synonymous_variant	p.Ala181Ala
T/C	51666633	synonymous_variant	p.His224His
T/C	51666759	synonymous_variant	p.Gly266Gly
A/T	51666879	synonymous_variant	p.Pro306Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03815.1

MEKPTQDLLHQQQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRIKRPNGDASSNSPPSSSTPISNSNPPSLPHIPSTSTANHINVNPLFYGLPSSNACDVMDVPFPRFNLQSQLSALGLGFSSGVNVISNQPSDNGFSATTTTTTSNTDNFLSAYNSIFGSSSSSTCAPTTPVMASLLSSTLLQQKFIGGAGLKGDHVGNGFQGLAPLQGLQMEGSNNISSKEVKAEGPNRLELEWSNGNNNNGGGGACQNQMEHVGLSDPNSLYWNTATSLSAWSDQPNFGPSVTSLI*

CDS Sequence:
>Vu_03815.1

ATGGAAAAACCAACCCAAGATCTTCTTCACCAGCAGCAACAAGCCCTCAAGTGCCCTCGCTGCGACTCTTCCAACACCAAGTTCTGCTACTACAACAACTACAGTTTGTCACAGCCCAGGCACTTCTGCAAAGCCTGCAAGCGATACTGGACCAGAGGTGGAACTCTCAGAAACGTTCCCGTTGGTGGTGGCTGCAGGAAAAACAAGCGTATCAAACGTCCAAACGGTGACGCTTCTTCTAACTCTCCTCCTTCTTCCTCCACTCCTATCTCCAATTCAAATCCTCCTTCACTGCCCCACATCCCTTCTACTTCAACCGCAAACCATATCAATGTAAACCCTTTGTTTTATGGCCTACCCAGTAGTAACGCTTGTGATGTCATGGATGTTCCTTTCCCAAGGTTTAATCTTCAGTCTCAGCTGAGTGCCCTTGGGTTAGGTTTTTCATCCGGGGTTAACGTTATCTCAAACCAACCCAGTGATAACGGCTTTAGTGCTACTACTACCACTACTACTTCGAACACTGACAACTTTCTTTCTGCTTATAATTCCATCTTTGGTTCTTCTTCCTCCTCGACTTGTGCACCCACCACTCCTGTTATGGCTTCCTTGCTGAGTTCCACTCTCCTGCAACAGAAGTTTATCGGCGGCGCTGGGTTGAAGGGTGATCATGTTGGCAACGGTTTCCAGGGTTTGGCACCGCTACAAGGGTTGCAAATGGAAGGGAGTAATAATATTAGCTCAAAAGAAGTGAAAGCCGAAGGACCGAACAGGTTGGAGTTGGAGTGGAGTAATGGTAACAATAACAATGGTGGTGGCGGTGCTTGTCAAAACCAGATGGAGCATGTGGGCTTGTCTGATCCTAATTCGCTTTATTGGAACACTGCAACCAGTTTGAGTGCTTGGAGTGATCAACCAAACTTTGGTCCTTCGGTCACTTCTCTGATCTAG

Promoter Sequence:
>Vu_03815::LG1:51663962-51665962(+)

TCACATGAAAATAGTATCGCTTAAATCATACCCGTAGGCCATAGACATAGTGACTAATCTCAATTAGTGAAGATAATGGTGGCTAATTAAGAAGGATTTTTATATAATAAATTACATTAGCATTTTTTCACGAGCTTCTCTAAAATATCAAGATTCAATTCTTTTCTTTATTTAATATTTACTGCATGCTATTCTTTAAATTTTAAAGTGAACACCTTTACATTTTATCAAAGATGTAAAAAATAAAAAAATAAAAATGAGAATAAGAAGTAAATTTTAAATCTAATTTAATTTTACAAAATTGAATTATAAGATGAAGTTTCTATCAGCTTAACATGATAGTAGATATTAATAGGTGGTGTGATAATGGTAGGAGATAGCTTAACATGATAGTAGATATTAATATATGGTGTAATAATGATAGCGAATAAAACAATATATCCAACCAATAATAAATTTTGTTAGAATAGATTCTAGTAATAACTTTAAAATCATATTAATAAATAAATTTTAAATCAAAAACTAAATCTCAATATTGTATATTATAAAATGATATTATTTCTAGTTGATTTGTTATTTTCAATATATTATAATAAAAAAAAATTGATAGGGTAATTGTTAGGAAAAGGGAAGATTTAAGGGAGAATCAAGTGGTGGAGAAGAATGATGAGTGGGAGAGGGAGGAGGAAGATCCCTTGGAGAACTACAAAATCTGTTCATTCACACTTATCTCTACCTTTATCTTTCTTTTATTCTTTTTTCCCTCCAATCTTAGCTGCATACCACATGCTTCTGCACATTTACAAGCTTCCATGCCTCCATCTCACACACTCACAATCTATTAACGCTTTATTATTGTTTTTCATTCAAAATTAAAATAAGAAAAAAAAAGTCCATCAAAATTGTTTCTTGGTCAATACGAACCTGAGAAGAAAGAACAAGCATTGCAGCTTGCAAAGCATGGTCTTCAATTTCGAGTCTTGATATGTAAATAACCACATGCTGTCTTTTTGTCCTTTTCATTTGGAGCTTTTAGCCCCTCGCCCAGATTTATTGTTCTCACTTCCCTCCTTTCATACCATATATATATTATCTTTTTTCATTTATACTGCGTATTTTGGCTTTAAATATTCATGCAAATGTCATATTTTATAGTTAAAGTTAAGAATAGGAACTAATAAATTTGTTGATGATTTGGAAATAGTATATAGTGATTAATATTGGAGCAAAATGGAAGTGGGATTTGCTGATACAGTAGACGCTTTGGGTGTTGGGCTCTTAGGGATTCCCTCGATGGGGTTATCTATATGATCCTATCATTCTGTCTGCACAAGGGAATGTAACAAGGGAATATATGTGTCATTTTTTTTTCTTTCTTGAACCACTCAAGATCCATCTCCCAATTCTGCTTTACCTCTGTGTCCTCTTCTTGGATTTCGAATGTTCTTTTTTATATTCCTTGTCATTGTTCCCATTCCATTATATTAATAGTCATCAAAATTGGATTTTAAACCAAACCCATCACGTGAAACTAACTATACACTGCTGGGTTTGAATTAACATATATTATCATTCCAAGGGGTCACAAATTAATTAATAGTCAACCACGTTCACCACATCATGTTAGATAATTAACCCTGTCCACGATTTACACACAGAAGAAGAATTAATTTGAAATCCGTTTATGGTTTGAAGGAGAGGAAAAAATTGTTGAGCGAGTGTGAGAAAATGGTAGCAGTCACCCTTCCAACAGCGTCTAACAAATGGACACAGCTTCACGTCTCTCTCTTAATTATTAGACAAATACATGTCCACCCCAATTTTGTTGCTTTCCTTTTGGAAGAGAATATCTCCACTGTGTTGTTATTTTACCCTAGAATTCCAACTTAAAACACTTTCTCTTTCATCTTTCTTTCTCTTTCTATCTATCTATCTATCTGTTATCTTCTCTTCTCTTGCATCTCAGATAGATGATCGCAAGGCCTCTATGGGAAGAGTCA

Gene Sequence:

>Vu_03815(+)