Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03722 LG1 50561297 50561986 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   response to reactive oxygen species, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, post-embryonic root development, response to reactive oxygen species, regulation of transcription, DNA-templated, post-embryonic root development, cellular response to potassium ion, cellular response to potassium ion, regulation of transcription, DNA-templated, response to ethylene, regulation of transcription, DNA-templated, response to ethylene, regulation of transcription, DNA-templated, post-embryonic root development, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA binding, sequence-specific DNA binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/A 50561395 missense_variant p.Pro198Ser
C/A 50561418 missense_variant p.Gly190Val
G/C 50561658 missense_variant p.Thr110Ser
G/A,* 50561763 missense_variant p.Pro75Leu
T/A 50561983 stop_gained p.Lys2*
A/T 50561985 start_lost p.Met1?

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03722.1
MKNKNKFVGVRQRASGKWAAEIKDTSKKIRMWLGTYQTAEEAARAYDEAACLLRGSNTRTNFSTQPCTTIATNSPISLKLRNLLHRKAMSNQTQVQNQPSGVSPSLQGATTPNGSTMNNIMVMEETSAFSGEGDKSLFVVQNQVSDNMYGLDMNMINCVMGITPDASQLDFSSWPFSQQRINELPLPKDGFSVERQLPDSVYATNECHHFEDTYEYDVNYPLSHFFCFT*


CDS Sequence:
>Vu_03722.1
ATGAAGAACAAGAACAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATCAGGATGTGGCTTGGTACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCAGCCCTGTACCACCATTGCTACAAATTCTCCTATTTCTCTAAAACTCAGAAATCTTCTTCATCGTAAAGCCATGTCAAATCAAACTCAAGTTCAAAACCAGCCCTCTGGTGTAAGTCCATCTTTGCAAGGTGCAACTACTCCAAATGGTAGTACCATGAATAACATCATGGTCATGGAAGAAACCTCTGCTTTTAGTGGTGAAGGTGATAAGTCTTTGTTTGTGGTTCAGAACCAGGTCTCTGATAATATGTATGGACTGGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAGCTTGATTTCTCTTCTTGGCCTTTTTCCCAACAAAGGATTAACGAATTACCATTACCAAAAGATGGATTCAGTGTAGAAAGGCAATTACCAGACTCGGTATATGCAACGAATGAGTGTCACCATTTCGAGGATACATATGAATATGATGTCAATTATCCTCTCTCTCACTTTTTCTGCTTCACTTGA


Promoter Sequence:
>Vu_03722::LG1:50561986-50563986(-)
GGAAGCATTGATCCTACAATTTCTGAAGTACGAATAAGATTCTTTTAAGTCAAAGATACATCGATTGATTGGGATTGTTGTATGTATATGAAACAGTGTAAAATTGATAAGATGTTTTCGACTTTTAAAAAAATACCTTTTTACTCATTTATGAAAAAAAAAATAGTGTAGGTATGGCTGTGTATATTATAATTTCGTACTTTCCTTAATAGAATGAACTTTTACAAGAAGTTGATTTTGTTCACAACAATGTCTTACTGCAAATGATGTTTTATTTTGTTAGTTCATAACTTAAATACGAAAATTAAAAATAAATCAAGTAATAATGAGTAAATAAACAAATTCTTCTCTGCCATGAATATTCTGTGAACACCAAAAGTTCATCACATAAAGCAGCAACAGCAGCACGGACCTACCACATTGCCTCTGCGATAACTTCCCTCATTGCCTCTGCCGTAACTTACCTCGTGCTACTGCCAGTTAGCCGCATACATCTATAATCTCCATATAGAAGCCAAAATCTGTTCTTTCTCTCGTCCTTTATTCCTACAGCACACACGTCTTAGATAATTTATCTGTGATATCTGATTTATTAGTATTTGGTCAGTAGAAAATTATCTATGAATTAATTTATAGTTTTAATTCGTAAATAAGATTTGCAAATAATTTATTCGTAGATAAAATTTATATATAATATATTTGTAAGTAAAAAAAATATATTTTTGAATTTTTTTTGTCAAAAAAGAGTGAGTCGTTCAAGGTAGAGATTGGTTTATTGATATATGAATAAAACTGAAGTAAGATATACTTACAGAATATTCTCGAAAGCTTAATTTAATAAAAACATAGAAAAATATGAATATAGAAGAGAACATGAGATTAAAAGTATTTATTCCAATGAGAATGTGTCATATTTATTGGTAAGTATGGATAGTTAAAGTAATTAGTTGATAATATTATGAGTAGTGGTACAATATTTAACTTCATTTGACTCAAAGATAAGATAATCATAAAATAAGACAAATCTTAAATGTTTAATTTACATTTTTAAATGTGATTATTTATTTAAATACTTACATTTGACTTTGTATGACGTTTTTCTAAATATTTCCGTTCAACTTGGTTAATGGCTTGTGGGTTTGATCGGCATTAGCAACGGAAGTGGCAATTCCTGTCCAATTCAACACCCATTAATAAGAAGAATCAAAATTCTGATGAAAACAAGTTTCAACACACATTTCCATAGATAAGTCAACCAACAATGAGACAATGAATATATGTCGCATTTATGTGATGGGCAATTGGCTGGAAAAAGACAACATCATATACACAAAACCCCATTGTTCAAGACTGAGACATGGTGTCATGGATTTTCCACTTCAGATGTTCATTAGTGGAACTGTTTTTATCACCAAATATACTGCGCTTGAACAAATGAAACACATGGTTAAGGTAAGGAGAATGCATTTTAACAAGTTAGGTGAGAAACGACATACATACACACACATGCTAGGAGACAAAAACAAAAGTTAAGACATTGTGGTTGGCTCTGAAATAGGTCATATGTCACATTCTACGACCATGAAATGTAAGTGGTGTGATTTCAAGGTGGAAAAAACGTACAATTATTATTTTTTTCCTTCTTGTTTCCATAAAATAAAGCCACATGGCCCCGTGCATTTTGCAGAAATGCACAGGAACAACATTAAAATTTACAACATCTTATGTAAGTGGTCATCACGAATTAGGCTTTGTCTCAATTCGGTTGACCAATCCAAGCCAGGGTGATCATAAGTGAGGACAACCACTACTACAACTACAAGCCAAATACAATCCCCACAACAAACAAAATACGAGCTTTCCACTACTCAAAGCAACTCAATGACATTTTTCAAGCTTCACATGTATGTACTATATATATATATATATACTTGTTTTTGTTATGTATTGCACTTGCATTGACGGGTATGGAAGATCAAAAGCAAAGGACGAAAGTGAAG


Gene Sequence:
>Vu_03722(-)
ATGAAGAACAAGAACAAGTTTGTTGGAGTGAGACAAAGGGCTTCAGGGAAATGGGCTGCAGAGATCAAAGACACGTCAAAGAAGATCAGGATGTGGCTTGGTACTTACCAAACTGCTGAGGAAGCTGCTCGAGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGCACCAATTTCTCTACTCAGCCCTGTACCACCATTGCTACAAATTCTCCTATTTCTCTAAAACTCAGAAATCTTCTTCATCGTAAAGCCATGTCAAATCAAACTCAAGTTCAAAACCAGCCCTCTGGTGTAAGTCCATCTTTGCAAGGTGCAACTACTCCAAATGGTAGTACCATGAATAACATCATGGTCATGGAAGAAACCTCTGCTTTTAGTGGTGAAGGTGATAAGTCTTTGTTTGTGGTTCAGAACCAGGTCTCTGATAATATGTATGGACTGGATATGAATATGATCAATTGTGTGATGGGTATCACACCAGATGCATCTCAGCTTGATTTCTCTTCTTGGCCTTTTTCCCAACAAAGGATTAACGAATTACCATTACCAAAAGATGGATTCAGTGTAGAAAGGCAATTACCAGACTCGGTATATGCAACGAATGAGTGTCACCATTTCGAGGATACATATGAATATGATGTCAATTATCCTCTCTCTCACTTTTTCTGCTTCACTTGA