Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_03712	LG1	50436541	50437032	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of transcription, DNA-templated, negative regulation of stem cell population maintenance, negative regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
T/G	50436542	start_lost	p.Met1?
A/T	50436619	missense_variant	p.Thr27Ser
G/A	50436660	synonymous_variant	p.Glu40Glu
G/A	50436903	synonymous_variant	p.Gln121Gln
T/C	50436906	synonymous_variant	p.Phe122Phe

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_03712.1

MAKVQSGQASEGIKLFGTTITLHGRETREDDKESEEGTEEKRPDRIIPCPRCKSMETKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKAKPPCHDPTGFLDDGLASTVQQQFGLEDRLILDQWHVATITHGDFRQFFPSKRRRINSGGQRQPC*

CDS Sequence:
>Vu_03712.1

ATGGCCAAAGTACAGAGTGGCCAAGCGAGTGAAGGGATTAAGCTGTTTGGAACAACGATCACCTTGCATGGTAGAGAAACAAGAGAAGATGATAAAGAGAGTGAAGAAGGGACAGAAGAGAAGAGACCTGATAGGATCATACCATGTCCAAGATGCAAGAGCATGGAAACCAAGTTTTGCTACTTCAACAACTACAACGTTAATCAGCCAAGGCATTTCTGCAAGGGCTGCCAGAGGTACTGGACGGCCGGCGGAGCCCTTCGCAACGTACCCATAGGGGCAGGTCGCCGGAAGGCCAAACCGCCGTGCCATGACCCTACAGGATTTCTCGACGATGGACTCGCATCCACGGTTCAACAACAGTTTGGTTTGGAAGATAGGTTGATCTTGGATCAATGGCATGTTGCCACCATCACTCACGGCGATTTCCGGCAGTTTTTTCCTTCTAAAAGGCGGAGGATAAACTCAGGTGGTCAACGTCAACCTTGCTAA

Promoter Sequence:
>Vu_03712::LG1:50434541-50436541(+)

TAAGGTTTTCTCAACCAATATTGAGGAAGTTGTTTTTTGACAAGTACTATTTATATGATTCATATTTATTGTGATTATTATTTTTTTGTTTGTGGATATTTATAGTGATAATTCTTTTTATCTTTCACACTAACATTATTCTTGTCAATGTTAGGACCTTTTTTTCTTATGATGAATAAGAAAATTTCCAACAAACATTAACTATCAATTATTTTGTCAATGTCGTCAATTGGGAAAATTTTTCCATTGACAACAATCAAAAAGATTGTAAAAGAATCCTTCAACTGCACGTAATAAAAAATAATATTGATTAATGTTAACCTAAATAATTGTAGTTGATATAAACTGAAAATGATTTTGGATAAAATAAATTAAGAGAAAGTTATGTTAACATTTTTTTTACTAATATTAAACATAATTTCTTTTAGTTAAGATAAACTAGGTTTAATTTTTAATTGATATAGGTCGTGGTTATTTTTTTCATTTTATATTTTATTAAGTTTTCTTTTCATGTTTGCAAAGTTTTATTTTTTATGCATATTAGTAGTGTAATCTTTCTTCCAAAGTTGGTCATAAATTTTTTCTAATGTTGGTTGTGGAAATTTTCCGTCATCATCGTTGATCGTTAAGTAAGATTTGCCGATAAAAAAAATAATAACTAAAATTTGTGGATAAAAGGAAAAATAGTTGAGTAAGATGTTTTTAACAATGTTAGCAAGACAAAATTTTCAATGTATATTCATCCTAAAGTTGGAAAAGAACCTACCACAATTGTCAACAAAATAACATTGACTAAGGTAAGCTAAAATAATGATGGTCAATAACGAGAAATTCTTAGCTAACATTGGTCAAAAAGACTGTAAAAACAGTAATCTTGATTAATGTGAACTAAAACAACTGTGATCAATATTAATAAAAAATAATCTTACATTTATTCAATTGTTTAATTTAAGCCACTTATGGGTAATTACATTAAAGAAGACTTTATCTTTTTGTGTAAGAATATATATTATGACAATTCTTTGAATAGTGGCTTATTATTTAGTAATAAAATATTAAAAATGGATAAATTTAATTTTCTAAGGGACTGGTAATTAATAGAGACAAACACAAATTAACTTGAGTAATTAAGAAAAAAATTGAATCATTAATATGAAAACAATTGCGAGAGAGTACAGAAGACGATGCAATTTACATTTTGTGCTATGTATATGCCTCACACCACGATCAATAACTTATCTAAACAGTTGCCGAATCATACTCACAGCATAATCAATTACTTAATTATTCATTATCATAACCTACCAAACATCCTTATTCTCCAAACTTCAAAGCCAAGTTTCAAAGATCAATGAATTTAGACGTCCAAAACAAAAATAATCATATACAATATTCCTTGGCTTCTCCTCTGAACTTTTTATAAAGAAGCTATAAATAACACAGAATCCAGACCCTCTTTTGGCTAACATAATATTTTCGAGCTGGCTTACATTTGAAAATGGAATATAAGTATATATAATAAAATTTGATGACTTTTTCAATAGTTCTTTTGGTTCTCTTTGTTACGAGTACTTTTCCTCTTTACAAGATTTATAGTATAAAATGAACATCCCTTTTACACATAGCAAGAGATCTACCTGGATTGGGCCTGCACTGTATGTATACATTTTAGCAGTGCATGGTCATGACGTAGACTACTAACGTGTACAAAAAGTTCATCCATAGCTTTTCCAGTTTCTACTCTTCCAAAACCCTTTTAACTTTTCTTCTTTTTCTCTTTTATTTAGTTTAATTCGCAACGCACTTTATATTCCACCTACGTTTTGGCGTTTTTCACATGGACTTTCTACCAAAAACCCATGGTTTATCATTCGACTAACTATTCTTTTGCATATATAAAAATACCTTGGTATTTTTCCTCTTCAACACCAACCTAAACATTCTTCACTACGAATAATCATTTTCTCTCTCTCTCTTTTTCTGTGCTCTCCCTGAGAAAA

Gene Sequence:

>Vu_03712(+)