Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03702 LG1 50251911 50256680 PREDICTED: two-component response regulator ARR18-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   protein binding, DNA binding, protein binding, protein binding, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/G 50252106 downstream_gene_variant
A/G 50252168 downstream_gene_variant
T/A 50252190 downstream_gene_variant
T/A 50252191 downstream_gene_variant
C/T 50252213 downstream_gene_variant
G/A 50252236 downstream_gene_variant
C/T 50252285 downstream_gene_variant
A/G 50252293 downstream_gene_variant
T/A 50252315 splice_region_variant&intron_variant
G/A 50252368 synonymous_variant p.Ala328Ala
C/A 50252403 missense_variant p.Gly317Trp
T/C 50252404 synonymous_variant p.Ser316Ser
G/T 50252527 synonymous_variant p.Thr275Thr
A/T 50252863 missense_variant p.Ser191Thr
C/A 50252928 missense_variant p.Gly169Val
A/G 50253099 intron_variant
A/G 50253125 intron_variant
G/C 50253167 intron_variant
T/A 50253245 intron_variant
C/T 50253246 intron_variant
G/A 50253380 intron_variant
A/G 50253476 intron_variant
A/C 50253595 intron_variant
A/T 50253597 intron_variant
C/T 50253634 intron_variant
A/T 50253778 intron_variant
A/T 50254061 intron_variant
G/A 50254170 intron_variant
T/A 50254322 intron_variant
C/G 50254434 intron_variant
G/T 50254487 intron_variant
G/A 50254853 intron_variant
C/T 50254872 intron_variant
A/T 50254942 intron_variant
T/C 50254967 intron_variant
A/T 50254971 intron_variant
T/A 50254972 intron_variant
G/C 50255120 intron_variant
T/C 50255179 intron_variant
A/C 50255212 intron_variant
G/T 50255246 intron_variant
T/G 50255384 intron_variant
T/A,* 50255468 intron_variant
C/G 50255485 intron_variant
A/T 50255490 intron_variant
T/G 50255504 intron_variant
C/T 50255513 intron_variant
G/T 50255524 intron_variant
T/A 50256362 splice_region_variant&intron_variant
A/G 50256363 splice_donor_variant&intron_variant
T/C 50256630 missense_variant p.Ile17Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03702.1
MSDEYEMSDEQVEDSSIGSSQKCSSFDLNEEASSENNSKGNDTRYEEAKDEGTSTNKSSSITREGNSERRGGVRQYVRSKMPRLRWTPELHLSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQVLSETYKSSHELGRISHVTHPRQHFKMGNGGIILASDYTDHSYYHGLLHPSNLSHSHSKAIDSRHQQWFFNNHQPFRKPSYFSNEVGSATLQTQARSMSSNQIQVMDATSIAPMRPSQFLEEKRWPPLEIMNNHPWKKRLPSNTDSKSVLLHQFGSTTSPSLRPTELNFPNKTRIREHLSNSDEHRSHSNAFNPEFEPPFRIKSNQEKMQKEKQWVPDLRLSLSQRDGNSDGKNDHCRETQEINTKLSLS*


CDS Sequence:
>Vu_03702.1
ATGTCGGATGAATATGAGATGAGTGATGAACAGGTTGAGGACAGTTCAATAGGATCATCGCAAAAGTGTTCATCCTTTGATCTGAATGAAGAAGCTAGTAGTGAAAATAATAGCAAGGGCAATGATACGAGGTACGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAGTGAACGAAGAGGTGGTGTGAGACAGTATGTTAGATCAAAGATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCGAAGTTGGTGCTTCAGCTAATGAACGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTCGATGAGGCCGGCCAAGTATTAAGTGAAACATACAAATCATCCCACGAACTTGGTCGTATTTCTCATGTGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACACCGATCACAGTTATTACCATGGTCTCTTGCATCCTTCAAACCTATCACACTCACATTCAAAAGCCATCGATTCAAGACACCAACAATGGTTCTTCAACAATCATCAACCTTTTAGAAAACCAAGTTACTTCAGCAACGAAGTTGGCTCAGCAACCTTACAAACGCAAGCAAGATCAATGTCTTCAAACCAAATTCAAGTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTGGAAATCATGAACAATCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGACTCAAAATCTGTTCTGCTTCATCAATTTGGCTCCACAACTTCACCATCTCTTAGACCAACTGAGTTAAACTTCCCAAACAAAACAAGAATCAGGGAACATCTATCTAACTCCGATGAGCATCGCAGCCATTCCAACGCTTTCAATCCTGAATTTGAACCTCCCTTTCGGATTAAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAGTGGGTGCCTGATCTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAGTGATGGGAAGAATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG


Promoter Sequence:
>Vu_03702::LG1:50256680-50258680(-)
TAAACCTGATGTGTAAAATAAATTTACAGAAAATAAAGAGTAATGAAAGAACATTATTGTGTGTGTGAGAGAGAGAGAATTAACATAAAAGTGAGAAGTCCCTAGCACAGGTCAAACAATTAAGATAATCACGAGCTATGAGAAGCTAGTTAGAGACAGACAGAGAGGTAGATTGATTTTTACAACTGTCAAGGAAGGGAGAGAAAAGGGTAGAGGGGAAAAGGTAGGAATTGTCACATGATTTGCAACAGTGGAAAAGGGACCAGCAACATCTGTATCCATTATGTAGGTTTATTACAATTTAAGGAGAACAAGTAGCCTGTCCGAATATTGTTGATTCTAAATTTTCTTTTTTCTTTCTTTTTCTTTCCTCCCATAAAACCCTATCTAATATCTTAAACTTATGACTCTAATTCTGCTGCTGAATTATATGCCAAAACAAAGACCAGTTCTTTCTCTCTCTCTCTCTCTCTCTCCTTCTTTCCCCCTCCAAACATATCACTGAACACCATCATCCAATACCAACACTGAATTCAGTTCAATCTTTCCATGGCCACACTCAGGTGACTCACTGAATATATGTTGGGAATTTCGATTTAAGAGCAGCTTCGTATATGATCAATAAGCTTTGCAAAAGAAACAATATACTCATTTATAGAGGGCACATCAGCATCGTGAATGGAGCTACTTTAGGGGGAAAAGGTGAAACACTCAAAATCCAAGTATTCTTTTCTCTTTTCTTTTGTTGATTTCTTGGCAAAACCATCAAGGATACCAGTTTATATAATCCACCCTTTTCGTGGGTTTCTTTCTCCTTCTCCTTTTTGTGTGGACTTAGGATCATCAATACCTTTCTCTTTGTTTCTTATGATTATATATGAATACTATTTCTTTCTCTTTGTTTCTAATGATTATGTATAAAACAATCCCTCCAATATTACTTCCTGAAAACTATATAATTTTTCATTATCTTATGAAACATCTTGAAATTTATGCATACACGGTCTGTTGAGGATTTTTAAGTCAATCGTAAGTTTTCTATTTCGCAGAAAGATTTTAAAGCACAGGATACTTCCTTCAGAGCCGCATTTCCCTAACTGAGATGTGCTTTATTCCTGGTGATAGCTGTGTTTTTGAATTTATCTTTCACAAGGGGCAAAACTATAACCCTTTTTCTTGATATCGTACATCTTTTCTTAATATCTAGAATAAGAACCCTGGTTGTTTTTTGAAGAGACAAGTGTCGCACCTTGTTCTTGTCCTAAAACGTTTGTATAGATAAAACGGAGAGAATCGATTATAAAATGTTAATTAACTCGCAGGTGAACAAATTCTCTCTCTTCGTCTGTATCCTGGTTTTCTTTATTCACTGCACAATGTTTACACATGAATATTTGTGTGAGTTCATGGATATAATCATGTGAGTGTGTTTTGTAAATCTCCTGAACTCGTAATATATATATTTATATAGGAACCTTTTGAAATTTATTGTTTCAGTGATTAAATTAAAATAATATATTTATCGTTATATTTCCTGAGTAGGAAATGACATGACCTAAAGCTAACTAAAGCGTGTGTTCATACAATTTACATCGTTTTAGTAGCACTAAATTTCTTCGTCTACCCCTTCAGTTAATTCCTTTCAACTTAAATATGTAGATCTGAATTTGGCATATCCTCATAAATTTTATTCACAGCTTCACGGTAAACAAGTTGGTTGCACTTTAACACTAAAATTCTTGAATTTTGACCTACTACAGCTATATGTGCCATAACTGTTCATTACTTTCTGATTTTCTTTTCTTGTGATATAATAATATTATATGAGTTTTAAAGCTTCGTAAATGTTGTAGAGAAACTACGGACGTGTCACAATTCTGTTAATATTGTTAATATTATATAAAATATTTGTTTTTGTTTCAGAATGGCATTCATAATTTGTACACAGTAAAGAATTGAAGTGGGAGTTGAATTTGATTCCTGAGCAACAACAAACGAAT


Gene Sequence:
>Vu_03702(-)
ATGTCGGATGAATATGAGATGAGTGATGAACAGGTTGAGGACAGTTCAATAGGATCATCGCAAAAGTGTTCATCCTTTGATCTGAATGAAGAAGCTAGTAGTGAAAATAATAGCAAGGGCAATGATACGAGGTACGAGGAAGCTAAGGATGAAGGTACTTCAACAAATAAAAGTAGCAGCATAACAAGGGAAGGAAATAGTGAACGAAGAGGTGGTGTGAGACAGTATGTTAGATCAAAGATGCCTAGGCTTCGTTGGACACCTGAACTTCATCTTTCCTTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGTAAGTATACATATATATGTTATTGATTTAGTTAAGGTCAAGTGTTGTTTATTTGTTCTTCTTTTTCTATTCGTTGTAGGTTGTCTTTATTTATTCTTCTAACTGGTATGACGTTGTTAAGATTTTTGTAATAGGGTTAGAGTAGTATTTGCATTCTTTATTAACAAATTTTTACTACTAAAAGAATTGTTTGACGTAAAATATTAGGCTGAAATGTTTGCATGAATTGGTGCAGGAGCAACACCGAAGTTGGTGCTTCAGCTAATGAACGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGGTAACAACAAAACTGAGGTTTTGATAAGATTACAGTTTTTCCCTGGAAAGATATTTCATGTTTAATTGCCATAAATAATAATTCGTATTATGCTTTTATTCATTTTAGATGTACCGGAGCAAGAAACTCGATGAGGCCGGCCAAGGTAAGATCTATCTAAATCTTGCAAAGCATGCTAATGCAATTTAATCCTTTTTTTTTATTAATTACATTAGAATCTTTTTTAGTAAATATTAATATATTTATTTATCTGACTTCAACTTTTTAATCACATTTCGATAAGCTTGGGATATAATTTAATTAGTGTGCTCTATTGTATGTCTCTCTCTCATGTTTTGTTGGATACCGTATTCAAAATTCACAACTCTTACACTGACAATGTTAATCACACTTGTTATAGTCTCTAATAAGTTGAATAAATGCTTGATATAGCATTTGAATTTTAAGATTGATCTTTCACTTAATAATCAATATTTTGTACTGAATTCTTCTTATACATAAATTTAAATAGATATTCTTATATTTAAACTTAAACTACAGAAATAACTATTTTATGCTTAATTATAAGGTGTAATATCAAATACATTTTTTTTCTTGGAGAGAAAACATTTTTTTTAAAATAAGAAGGCTAAACTAAAGCACAATAATATTAAAAGATCTGCCGAAAAAATCTCTTATAAAATTAGAACAATACAAATAATAGATGAATGAATTTATTAAAAAAACACCAACCTTTTAAAGAAAGTAAAAGTTTTAAGAGTTTCACGTTAATTAAAATAAATAAAAAATGGTATATGATTCTTAAACCTTAAGGCTAGTTTTTAGATTGATTTTTTCTTCTTTATTAATGAGAATAATGTCACATATACTCAGACTTTGACATGCTCACTACTAATTCCATTTCAATTATCATGAAACTTGGTTAAATAATTCTATTATAATCAGTACATTCATTATCAAATATAATGCTCAACCGTTGTTTAATAATTAGAAGTTTTCAGCAACAATGTGTCATTTGGAAAAGGGATCCCCACTAGTTGGTCCATCAATCTTAAAGTTATAACACAAGAACAGAATAAAATTCTAATGAAGAATACAAATTCCAAATTATCACCCTCCTCTAGAAAATATAAATAACGGAGAACATGGAAACAATACTCACTCAGCTTAGATATCACACGTTCATTAATGGGTTAAAACAAATTAAATACATTATTGATAAATTGGACATATATATTGAAAAATATAATTCTTGAAAACATCAAGGAATTAAATGCATGATACATAGAAACATTAGTATGGAATTAATATACATGAACTAAATTTATATAGATAATTGTTCACAATGAAGAAAATGTTTACTACTGATAGTAGTACTCTATTTTACAACACTAGGCGTCTTCTACAAATTTAAAATGGATGCAAATTTGACCATTTTCATTATTCAAACAAAGAAAATTGAAGTGTGATTTAGATCGAACCATTATCTGAATTGAAATTAACAAATTGTTGTGGACAGGGTGTCGTACTTGTATTCTTTTTATATTTTATTATATTTTTCACGTCGCAACTAGGATATGAAAACTAAACATTGGTGTCATCGAAGTTGGAACTACTGGTCTATGGAGGCAAAATCAACTACAGCATTTAAGTAATGCATGTTTGTGTACCCAAACAAGTAAGCACTAACGAAAAGAGAAAAAGAGATAGAGATAGACAGAGAGAGAGAGAGAGAGAAATATAGTTATACTTTAAAAGTTAGATTTTTAACATATAATGTTTTTTCAATAGGAAATGTGGCTATATATAAAATAAAATTGCATAGATAAATATAAATATTTAAATTATCTCAAATGTAACATACATGGTCATGAAAGTAAATCATACGATTCAAATATTATATCTGTTAAATTTAAATTCTATAAAAGTTATTACTTAATTAGAGTTAAACTTACTCATTAAGTAAGTGAGTATATTAATTTCTTGAGAAATAAAGCTAGTCCTTAGGCTTTTCTTAACTTATAAGTATAATCTTTACTAGGAAATAGAAATGGTAGTTTAAACAATGTCAGAATTAATTTAATGCATTGTACTGAAACTATTTTATGCAGACATTGTATAGTTCAATATTTCCTATTCAAAACTATATTAATTTAACTAAGCAGAATGTTTATATTAAGAATTCAAATTTGCTTTAAAAATATTATACTTAGGGAAACTGATGGTCTTATTTTCATTATCCGTGTGTATTCATAATACGCCATGCTTTTTAAGTAGCTCAAAAAAAGCATCCAAAAGAAATTATTGAACGAAGTGATTTCAAGTGATGTTGGTCAAATTTATTTTGGGTCTCTCTTTTCAGGAGCAGTTGAGTCAAACAAAGTTGTAAGGTAAATGTCTTAAAAATTATTTTTTATGGAGAAAGTTTTAATTTTGAAAATAGCCAGTTTTAGAATATTTTGATATCTGTTATCTCTATCTATTTGAAATTTTAAGATTAAAAATCATCGTAGTACTGGAATTATAGGTAACGTGCTTACATGAAAAACCTATTTATAAATAATAAATTTTATCTTTATTTTTTATTTTCCCTTCAACTTCAAAGTAACATTAAAATCAAGATAATCCATATAAATGTTCTCTTAGTATTGTGCTTCCTTCAATTATAATAGCATTGATATCATTCTCTTTAATTTCAAGATAAAACAATAATATCATATTTCTTTTGAAGATAGAAAAATAATTTACAAAGAGAATATTAAAGGAAAATTTAATTTTTCTCACTTTTTTTTTCTCAAACATTAAAGAAAAGAAATAGATTTTGATATATCTACTAATGAAACATTTTGTCTTATAACATGGTGAACATCAAAGTAAATTTTATCCGAACATGAGACTTCTCTTCTGACAATGATGTCTTTATTTATTGTGTTTTTGGTCAGAAATTGTATGTTAGTGAGATTCTGGTTACCAAGGGTTGGATATGTTTTAGGTATTGTTATTTTAACTTTTTTACTATATATTCATCGACATTCACTTTGCAGTATTAAGTGAAACATACAAATCATCCCACGAACTTGGTCGTATTTCTCATGTGACCCATCCTCGTCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTGATTACACCGATCACAGTTATTACCATGGTCTCTTGCATCCTTCAAACCTATCACACTCACATTCAAAAGCCATCGATTCAAGGTAACCATGCAAACATTTTAAGTCCTTTTCATTCCAAATGTTTTCCAATCTAATCCAATCTGCAATATATCTATCACCAGACACCAACAATGGTTCTTCAACAATCATCAACCTTTTAGAAAACCAAGTTACTTCAGCAACGAAGTTGGCTCAGCAACCTTACAAACGCAAGCAAGATCAATGTCTTCAAACCAAATTCAAGTAATGGATGCTACCAGCATTGCACCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTGGAAATCATGAACAATCACCCCTGGAAGAAAAGGTTACCTTCTAATACTGACTCAAAATCTGTTCTGCTTCATCAATTTGGCTCCACAACTTCACCATCTCTTAGACCAACTGAGTTAAACTTCCCAAACAAAACAAGAATCAGGGAACATCTATCTAACTCCGATGAGCATCGCAGCCATTCCAACGCTTTCAATCCTGAATTTGAACCTCCCTTTCGGATTAAGGTAACATCAATCGCATATATTTTCTTCTTGAAAATGTCATTTTCTATTTCGATTTTTAATCTTAATTCCATACAATTACTGATTCTTTTAATCTTTTTGAAACATAAGAACTTGCTTTTACCATTTTTTAAAAATTGTTATAGACTAGAAACTAGTAAGAGAAAAGTTAAACTCTAAAATTTGAAAAAATCTATCACTAAGATGTAATATAAGCATTTTTTTTTTCTTACTAAACCATTGATAGAATTTGGTTTGATGAAATGCAGTCGAATCAAGAAAAAATGCAGAAAGAGAAGCAGTGGGTGCCTGATCTGCGACTGAGTTTAAGTCAGAGAGATGGCAACAGTGATGGGAAGAATGATCATTGCAGAGAAACCCAAGAAATCAACACGAAACTTTCACTTTCATAG