Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_03575 LG1 48880925 48881923 PREDICTED: disease resistance protein At4g27190-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to salt stress, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, response to salt stress, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
T/C 48880926 start_lost p.Met1?
G/A 48880944 missense_variant p.Gly7Glu
C/T 48880947 missense_variant p.Thr8Met
G/A 48880948 synonymous_variant p.Thr8Thr
T/G 48880956 missense_variant p.Leu11Trp
C/T 48880959 missense_variant p.Ser12Leu
C/T 48880969 synonymous_variant p.Thr15Thr
T/C 48880970 missense_variant p.Ser16Pro
T/C 48880976 missense_variant p.Ser18Pro
C/T 48880982 missense_variant p.Pro20Ser
G/A 48880985 missense_variant p.Gly21Ser
A/T 48880991 stop_gained p.Lys23*
A/C 48880992 missense_variant p.Lys23Thr
G/A 48880996 synonymous_variant p.Glu24Glu
G/A 48881000 missense_variant p.Glu26Lys
A/G 48881009 missense_variant p.Lys29Glu
A/G,* 48881021 missense_variant p.Thr33Ala
C/T,* 48881022 missense_variant p.Thr33Ile
T/A 48881035 synonymous_variant p.Ile37Ile
T/C 48881040 missense_variant p.Val39Ala
A/C 48881042 missense_variant p.Lys40Gln
A/G 48881054 missense_variant p.Lys44Glu
A/G 48881057 missense_variant p.Arg45Gly
T/G 48881064 missense_variant p.Ile47Arg
T/C 48881082 intron_variant
G/T 48881092 intron_variant
G/A 48881103 intron_variant
G/T 48881106 intron_variant
A/G 48881107 intron_variant
A/T 48881118 intron_variant
T/C 48881127 intron_variant
A/G 48881158 intron_variant
A/T 48881162 intron_variant
A/T 48881172 intron_variant
G/A 48881174 intron_variant
C/T 48881202 intron_variant
G/C 48881219 intron_variant
T/A 48881222 intron_variant
T/G 48881232 intron_variant
T/C 48881234 intron_variant
T/C 48881246 intron_variant
C/T 48881273 intron_variant
G/A 48881275 intron_variant
T/G 48881288 intron_variant
A/G 48881301 intron_variant
C/T,G 48881344 intron_variant
A/C 48881392 intron_variant
G/C 48881444 missense_variant p.Lys52Asn
T/C 48881471 synonymous_variant p.Ser61Ser
C/A 48881541 missense_variant p.His85Asn
C/T 48881548 missense_variant p.Thr87Ile
A/G 48881560 missense_variant p.Tyr91Cys
C/A 48881580 missense_variant p.Gln98Lys
G/A 48881582 synonymous_variant p.Gln98Gln
A/G 48881628 missense_variant p.Arg114Gly
A/C 48881639 missense_variant p.Glu117Asp
C/T 48881644 missense_variant p.Thr119Met
G/C 48881654 synonymous_variant p.Ser122Ser
A/T,C 48881658 missense_variant p.Ile124Leu
T/C 48881659 missense_variant p.Ile124Thr
C/G,A 48881673 missense_variant p.Gln129Lys
G/T 48881680 missense_variant p.Ser131Ile
G/T 48881707 missense_variant p.Ser140Ile
G/C 48881713 missense_variant p.Ser142Thr
G/A 48881718 missense_variant p.Glu144Lys
T/C 48881730 missense_variant p.Tyr148His
G/T 48881739 stop_gained p.Glu151*
A/C 48881752 missense_variant p.His155Pro
T/C 48881753 synonymous_variant p.His155His
T/C,* 48881777 intron_variant
G/T 48881808 intron_variant
T/C 48881816 intron_variant
A/C 48881822 intron_variant
T/A 48881839 intron_variant
A/G 48881848 intron_variant
A/G 48881864 synonymous_variant p.Gln162Gln
C/A 48881868 missense_variant p.Pro164Thr
T/C 48881921 splice_region_variant&synonymous_variant p.Asp181Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_03575.1
MTKLHLGTPLLSPSTSFSLPGSKEGEAQKRKSTIGPIIVKPLSKRKIKQYGKKSVEGRDSSRSYYKCTHPNCPVKKKLERSFEGHVTEIIYQGEHNHQRKTTKGILTSTENSDRLKEETSYSVIQMDLQSSEDEHGSGISDSEEVGDYETEVDEHDPKGRNTKARLQDPTSEVDILDDGYR*


CDS Sequence:
>Vu_03575.1
ATGACGAAGTTACATTTGGGAACGCCTCTTTTGTCGCCTTCAACCTCATTTTCGTTACCGGGTAGTAAAGAGGGTGAAGCCCAAAAGCGGAAATCCACTATTGGGCCAATTATAGTAAAACCGTTGTCAAAAAGGAAAATAAAGCAGTATGGGAAGAAAAGTGTAGAGGGTAGGGACTCCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTGGAGCGATCTTTTGAGGGTCATGTAACTGAAATTATTTACCAAGGAGAGCACAACCATCAGCGTAAGACCACTAAAGGCATCCTAACATCAACTGAGAATTCAGATAGGTTGAAAGAAGAGACGAGTTACTCGGTGATCCAGATGGATCTACAATCTAGTGAGGATGAACATGGGTCTGGAATAAGTGACAGTGAGGAAGTAGGTGATTATGAAACTGAAGTGGATGAACATGATCCCAAGGGGAGAAACACAAAAGCCAGACTCCAGGATCCAACAAGTGAAGTGGATATCTTGGATGATGGATATAGATAG


Promoter Sequence:
>Vu_03575::LG1:48878925-48880925(+)
TTGTTGTTTTCTACTGACTCTGCTGAGGTTGAACCTTCTTCTTGACTTTCTCTTGGTGTATTGTTATCAGTAAAGATTCACCCATATTTTCTTCATTTGTACTAGTGTTGGCAAGACTATCACCTGTGGTTTCTTCTTGATGACTTGTAGTATTGTTGTTTGGTTCAAGAGTATTATTGATAGTGCTACTCGCAAAGTAATTAGGAAGCAAAATTGACAGGTTCAATTAATTCTTTTAAAGAATTTCTTGTGTCAATGAAACCTTCATGAAAAGGGAAGTGCTTCTCATTGAAAATCACATGTCTTGAGATGAAAATTCTCCTATGAGAATTAATGCATTTGTATCCTTTGTGTGAATTATTGTAACCAAAAAACACATACCTAGTTGTATGAAACTGAAGTTTATTTTGATTGTACGGTTTGAGACAAGGATAACAGGCACACCCAAAAGGTTTCAAGTTTGCCTAGTCAGGTTCTTTCTTGTAAACCCGTGAGTATGGACTTTTGTTTGGATTTATTGATGATGGTAGTTTATTGATTAGGTAAACAATAGTTAAGAAGGCTTCCCACCAGTGGTGTAGGAACATTTTGGCTTGTGCTAATAGGGTTAAGCCAAGTTCAACAACATGTCAGTGTTTTCTCTCAGCCTTGCCATTTTGTTGAGAGGTGTAGGGATAAGACATTCTAAATATAATTCTTCATTATGAGACAATCTTTTGAAAAAAATTAAATTTATCACCTCCATCACATATGACTTTAATTTTTTTATTAAACTCATTTTCAACCATAGCTTTGAAAAAGGTGAAGACATGTATAGTTTCTGATTTTTGCTTTTAAGGTAAAAATCTATGTCAACGTACTAAAATCATCAATAAAATAAACATATTATTTAAATCTAGATGGAGATAGAGCAGGAACCCAAACATCATTATGAATTAACAAGTTTCACAAAATGTGAACGAGTAAATAAACTATGTTTTCACGTTAAATTAAAAAATAAAATATTTTTATTTAAATTATTCATTTAATTTATGAATTTATAGTGGTCTATCAACCTTTGATTTATAAAAAAAAAAAAAATGAGTCGAGTTAAATTGATTATTTTTATCTCAACTTGTACCGAACTAAATTGTGAGTTTGGTTACCTTTGAGAGTCCTAATGGCGTGTGTAGTAAATGAATTTGTGCATTTTCCTAAGAAGCAACACTTCCAGTATATAGGTGAGAAGTAAGCAAAGATAAGAAATAGAAGGTTACGTGCTTGGAAAGTGGAGTTACTCTCTCTCCCTCTACAAACTTTTCACACCAAAGCTCGAAGAGATTGAAATGTTTATTTTAACCCTTTTGTTTTTCATTCAAATAATTTCTTACTCTGTCTTTTCTCTCTCTACCTAACGGAACATATATATGACAGTAGATCAATTTTACATAAATAGTTTTAGAGCAAAATATGGAGCAGTCATCAATAATGGTCATTTGTGTCTACAATAGCAGGCTAAGTAGCGACTTATATATATATATGCTTATACCAATTTCTCACATCACCACATTTGTTAAAATTGGTATATTAATAGCAAGACTATCTTTTAATGTGCGTATTAAAATAAGCCATTACAGCTATGAGGACCAAAATTACTCAATTTTCAAATGTACGGATAAGATGGAGCTATTCAAAATTACTCGAACTATAGGAATCAAAATTATTCGCACATTAAACAAAATAAACAAAAGTGGAACCAAGTTAATCTCTTTTTTTTTATGAAGAAACAAAATTAACTTCACAGCAATTCTTCTTGGTGCTTGCTGAATTGTGTCAAATTCTTTTCTTGCTTCAACTTAATTATGTTTAGAGATTTAAACAAACAAGTCTGTTCATATTTATCTTTCTACCCATCAAACTACAACCTTTTGTATAACTCTACAACAATTAATTTTGTTACTGTGATCGTACCCTCTGAAATTCATCTTCCTTTCAGGGAGTTTCAAGTTCTACCGAGTTGA


Gene Sequence:
>Vu_03575(+)
ATGACGAAGTTACATTTGGGAACGCCTCTTTTGTCGCCTTCAACCTCATTTTCGTTACCGGGTAGTAAAGAGGGTGAAGCCCAAAAGCGGAAATCCACTATTGGGCCAATTATAGTAAAACCGTTGTCAAAAAGGAAAATAAAGCAGGTTTGAGATGTTTTTCTTATGATTCCTGATTGATGACTTTTTGTTTACATTCTTATATACATGTTAGTAGTGATGATAGTTTTAGTATTGATTTTCTGATATGCAAATTACTGAACACAAACCAAACCAACTATACAGATTTCTTTAGTATTAATTATTATGTATTAAGTTTAATGATAAATTATATACAATTAATCTAAACCGATGAAAATTTAATAGTTCAGATTTTATTTCAGTTTTCATCCAAACCCATGCATGAATACCTCTACTTTCAACCAATCCAATTAAGGTTCAGATTGGTTTGGATTTAATATTTATTAAGATACAGCTTGATGATGATGATGATGGCTACAACTGGAGGAAGTATGGGAAGAAAAGTGTAGAGGGTAGGGACTCCTCTCGAAGTTATTACAAATGCACACATCCAAATTGTCCTGTTAAGAAAAAGCTGGAGCGATCTTTTGAGGGTCATGTAACTGAAATTATTTACCAAGGAGAGCACAACCATCAGCGTAAGACCACTAAAGGCATCCTAACATCAACTGAGAATTCAGATAGGTTGAAAGAAGAGACGAGTTACTCGGTGATCCAGATGGATCTACAATCTAGTGAGGATGAACATGGGTCTGGAATAAGTGACAGTGAGGAAGTAGGTGATTATGAAACTGAAGTGGATGAACATGATCCCAAGGGGAGGTAAGGGTTTAATTCATATATATAAACCTGTTCATGGTGGGACAATTATTTGGCATTATGTGATTTTGGAATGTTTTATTATTTCGCAGAAACACAAAAGCCAGACTCCAGGATCCAACAAGTGAAGTGGATATCTTGGATGATGGATATAGATAG